ID: uc002sbh.2_intron_9_0_chr2_61719334_r
GENE: (4)
chr2:61719284-61719509-


(2)
AGO1.ip 		(2)
AGO2.ip 		(1)
AGO3.ip 		(9)
B-CELL 		(4)
BRAIN 		(5)
BREAST 		(25)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(7)
HEART 		(10)
HELA 		(4)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(24)
SKIN 		(1)
TESTES 		(2)
XRN.ip

Sense strand
CTGGAAATTTCTGAAGACTGTAGTTAACAAGCTGTTCGAATTCATGCATGGTAAATCTCTTTCTTTACTATATTTTGCTTTTATTTTTATTGAAGAAAATAAATGAATGTTTTTGTCTTGTTAGAGACCCATGATGGAGTCCAGGACAAAATAAATGAATATTTTTGTCTTGTTAGAGACCCATGATGGAGTCCAGGATATGGCTTGTGATACTTTCATTAAAATA
...............................................................................(((((((((......))))))))).......((((((((((.....(((((.....)).)))))))))))))...........................................................................
............................................................................77.........................................................................152........................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR343336SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343334SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM532874(GSM532874)
G699T. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359195(GSM359195)
HepG2_TAP_depl. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR343337SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
...........................................................................................................TGTTTTTGTCTTGTTAGAGACCCATGATGGAGTCCAGGACAAAATAAATGAATATTTTTGTCTTGTTAG..................................................69122.0022.00---3.0017.00---------------------------------------1.00--------------------------------1.00--------------------
............GAAGACTGTAGTTAACAAGC..................................................................................................................................................................................................20110.0010.005.001.00-----2.00----2.00-------------------------------------------------------------------------------------
.........TCTGAAGACTGTAGTTAACAAGCT.................................................................................................................................................................................................2418.008.00-1.00---1.004.00--1.00-------------------------1.00--------------------------------------------------------------
.................................GTTCGAATTCATGCATG................................................................................................................................................................................1718.008.001.00-------6.00---------------------------------------------------1.00-------------------------------------
..........................................................................................................ATGTTTTTGTCTTGTTAGAGACCCATGATGGAGTCCAGGACAAAATAAATGAATATTTTTGTCTTGTTAG..................................................7018.008.00---6.00-------------2.00--------------------------------------------------------------------------------
.....AATTTCTGAAGACTGTAGTTAAC......................................................................................................................................................................................................2316.006.002.002.00---2.00--------------------------------------------------------------------------------------------
.........TCTGAAGACTGTAGTTAACAAGC..................................................................................................................................................................................................2316.006.00-----3.001.00--1.00---------------------------------------------------1.00------------------------------------
............................................................................................................GTTTTTGTCTTGTTAGAGACCCATGATGGAGTCCAGGACAAAATAAATGAATATTTTTGTCTTGTTAG..................................................6815.005.00---5.00----------------------------------------------------------------------------------------------
..........CTGAAGACTGTAGTTAACAAGCT.................................................................................................................................................................................................2314.004.00------2.00-----1.00-------------------------------------------------------------------------1.00-----------
...........TGAAGACTGTAGTTAACAAGCTGTTC.............................................................................................................................................................................................2614.004.00-----------3.00-------------1.00------------------------------------------------------------------------
.....AATTTCTGAAGACTGTAGTT.........................................................................................................................................................................................................2014.004.004.00-------------------------------------------------------------------------------------------------
..............................................................................................................TTTTGTCTTGTTAGAGACCCATGATGGAGTCCAGGACAAAATAAATGAATATTTTTGTCTTGTTAG..................................................6614.004.00---3.00-------------1.00--------------------------------------------------------------------------------
.......................TTAACAAGCTGTTCG............................................................................................................................................................................................1514.004.00---------------------------1.00---------2.00--------------------------------------------------1.00---------
............GAAGACTGTAGTTAACAAGCT.................................................................................................................................................................................................2114.004.002.001.00-------------------------------------------1.00----------------------------------------------------
.........................AACAAGCTGTTCGAATTCA......................................................................................................................................................................................1914.004.00----------------------4.00---------------------------------------------------------------------------
......ATTTCTGAAGACTGTAGTTAACA.....................................................................................................................................................................................................2314.004.002.00----2.00--------------------------------------------------------------------------------------------
........TTCTGAAGACTGTAGTTAACAAGC..................................................................................................................................................................................................2414.004.00------3.00------------------1.00------------------------------------------------------------------------
.............AAGACTGTAGTTAACAAGCTGTT..............................................................................................................................................................................................2314.004.002.002.00------------------------------------------------------------------------------------------------
.TGGAAATTTCTGAAGACTGTAGTTAAC......................................................................................................................................................................................................2714.004.00------------------1.00-------3.00-----------------------------------------------------------------------
............GAAGACTGTAGTTAACAAGCTGTT..............................................................................................................................................................................................2413.003.002.00--------------1.00----------------------------------------------------------------------------------
....AAATTTCTGAAGACTGTAGTTAACAAGCT.................................................................................................................................................................................................2913.003.00-1.00-----2.00------------------------------------------------------------------------------------------
.........TCTGAAGACTGTAGTTAACAAGCTG................................................................................................................................................................................................2513.003.00-1.00-------------------1.00-------------------------------------------------------------1.00--------------
...........TGAAGACTGTAGTTAACAAGCT.................................................................................................................................................................................................2213.003.00------------------3.00-------------------------------------------------------------------------------
..GGAAATTTCTGAAGACTGTAGTT.........................................................................................................................................................................................................2313.003.00-1.001.00-----------------------------------1.00-----------------------------------------------------------
..........CTGAAGACTGTAGTTAACA.....................................................................................................................................................................................................1912.002.00-------------2.00------------------------------------------------------------------------------------
...................GTAGTTAACAAGCTGTTCGAATTC.......................................................................................................................................................................................2412.002.00-----------------------------1.00------------1.00-------------------------------------------------------
..........CTGAAGACTGTAGTTAACAAGC..................................................................................................................................................................................................2212.002.00-1.00---1.00--------------------------------------------------------------------------------------------
..................................................................................................................................................................................................AGGATATGGCTTGTGATACTTT..........2212.002.00--------------1.00-----------------------------------------------------------------1.00-----------------
..........................ACAAGCTGTTCGAATTCAA.....................................................................................................................................................................................1912.001.00----------------------------1.00---1.00-----------------------------------------------------------------
..................................................................................................................................................................................................AGGATATGGCTTGTGATACTTTCA........2412.002.00---------------------------------------2.00----------------------------------------------------------
.....AATTTCTGAAGACTGTAGTTAACAA....................................................................................................................................................................................................2512.002.00-------------------------------2.00------------------------------------------------------------------
...GAAATTTCTGAAGACTGTAGTTAACAAG...................................................................................................................................................................................................2812.002.00------------------------2.00-------------------------------------------------------------------------
................................................................................................................................................................................AGACCCATGATGGAGTCCAG..............................2022.002.00--------2.00-----------------------------------------------------------------------------------------
...................................................................................................................................................................................CCCATGATGGAGTCCAGGATATG........................2312.002.00-------2.00------------------------------------------------------------------------------------------
......ATTTCTGAAGACTGTAGTT.........................................................................................................................................................................................................1912.002.00-----1.00----------------------------------------------------------------1.00---------------------------
..................................................................................................................................................................................................AGGATATGGCTTGTGATA..............1812.002.00----------1.00------------1.00--------------------------------------------------------------------------
................ACTGTAGTTAACAAGCTGTTCGAATT........................................................................................................................................................................................2612.002.002.00-------------------------------------------------------------------------------------------------
..................................................................ACTATATTTTGCTTTTATTTTTATTG......................................................................................................................................2612.002.00------------------------------2.00-------------------------------------------------------------------
...........TGAAGACTGTAGTTAACAAGCTGTT..............................................................................................................................................................................................2512.002.002.00-------------------------------------------------------------------------------------------------
..........CTGAAGACTGTAGTTAACAAGCTGT...............................................................................................................................................................................................2512.002.00-----1.00-------------------------------------------------------------------------------1.00------------
.........................AACAAGCTGTTCGAATTT.......................................................................................................................................................................................182.000.00--------------2.00-----------------------------------------------------------------------------------
....................................................................................................AAATGAATGTTTTTGTCTTGTTAGAGACCCATGATGGAGTCCAGGACAAAATAAATGAATATTTTTGTCTTGTTAG..................................................7612.002.00---2.00----------------------------------------------------------------------------------------------
.TGGAAATTTCTGAAGACTGTAGTT.........................................................................................................................................................................................................2412.002.00-------------------------------------------2.00------------------------------------------------------
......ATTTCTGAAGACTGTAGTTAAC......................................................................................................................................................................................................2212.002.00---------------------2.00----------------------------------------------------------------------------
..........................ACAAGCTGTTCGAATTCATG....................................................................................................................................................................................2012.002.00-----------------------2.00--------------------------------------------------------------------------
.............AAGACTGTAGTTAACAAGC..................................................................................................................................................................................................1912.002.00-1.00--------1.00---------------------------------------------------------------------------------------
...GAAATTTCTGAAGACTGTAGTTAACAA....................................................................................................................................................................................................2712.002.002.00-------------------------------------------------------------------------------------------------
..GGAAATTTCTGAAGACTGT.............................................................................................................................................................................................................1912.002.00-----------------------------1.00----------------------------------1.00---------------------------------
.....AATTTCTGAAGACTGTAGTTA........................................................................................................................................................................................................2112.002.001.00-----------------------------------------------------------------1.00-------------------------------
.....AATTTCTGAAGACTGTAG...........................................................................................................................................................................................................1821.501.50-------0.50--0.50--------------------------------------------------------------------------------0.50------
..GGAAATTTCTGAAGACTG..............................................................................................................................................................................................................1821.501.50----------0.50----------------------------------------------------------------------------------0.500.50---
..............AGACTGTAGTTAACAAGCTGTTCGA...........................................................................................................................................................................................2511.001.00-----------------------------1.00--------------------------------------------------------------------
........TTCTGAAGACTGTAGTTAACAAGCT.................................................................................................................................................................................................2511.001.00-----1.00--------------------------------------------------------------------------------------------
...GAAATTTCTGAAGACTGTAGTTAA.......................................................................................................................................................................................................2411.001.00---------------------------------1.00----------------------------------------------------------------
...............GACTGTAGTTAACAAGCTGTTC.............................................................................................................................................................................................2211.001.00------------------------------------1.00-------------------------------------------------------------
..GGAAATTTCTGAAGACTGTAGTTAACAAGCTGTTCGAATTCATGCATGA...............................................................................................................................................................................491.000.00----1.00---------------------------------------------------------------------------------------------
..GGAAATTTCTGAAGACTGTAGTTAACAAGCTG................................................................................................................................................................................................3211.001.00-------------------1.00------------------------------------------------------------------------------
..........................ACAAGCTGTTCGAATTCATGCATG................................................................................................................................................................................2411.001.00----------------------------1.00---------------------------------------------------------------------
...........TGAAGACTGTAGTTAACAAGCTG................................................................................................................................................................................................2311.001.00-----------1.00--------------------------------------------------------------------------------------
....AAATTTCTGAAGACTGTAGT..........................................................................................................................................................................................................2011.001.00---------------1.00----------------------------------------------------------------------------------
............GAAGACTGTAGTTAACA.....................................................................................................................................................................................................1711.001.00-------------------------1.00------------------------------------------------------------------------
..............................GCTGTTCGAATTCATGCATGAGA.............................................................................................................................................................................231.000.00-----------------------------------------1.00--------------------------------------------------------
......ATTTCTGAAGACTGTAGTTAACAAGC..................................................................................................................................................................................................2611.001.00------------1.00-------------------------------------------------------------------------------------
..............AGACTGTAGTTAACAAGCTGTTCGAA..........................................................................................................................................................................................2611.001.00------------------------------------------------------------------------1.00-------------------------
................ACTGTAGTTAACAAGCCGT...............................................................................................................................................................................................191.000.00------------------------1.00-------------------------------------------------------------------------
..................................................................................................................................................................................................AGGATATGGCTTGTGATAATTT..........2211.002.00-----------------------------------------1.00--------------------------------------------------------
.........TCTGAAGACTGTAGTTAAAAAA...................................................................................................................................................................................................221.000.00-----1.00--------------------------------------------------------------------------------------------
.....................................................................................................................................................................................CATGATGGAGTCCAGGAT...........................1811.001.00--------------1.00-----------------------------------------------------------------------------------
....AAATTTCTGAAGACTGTAGTTAAC......................................................................................................................................................................................................2411.001.00---------------------1.00----------------------------------------------------------------------------
.........................AACAAGCTGTTCGAATTTT......................................................................................................................................................................................191.000.00----------1.00---------------------------------------------------------------------------------------
..................TGTAGTTAACAAGCTGTTC.............................................................................................................................................................................................1911.001.00--------------------1.00-----------------------------------------------------------------------------
.......................TTAACAAGCTGTTCGAATTCATGCATGAGAC............................................................................................................................................................................311.000.00---------------------------1.00----------------------------------------------------------------------
.......TTTCTGAAGACTGTAGTTAACAAGCTG................................................................................................................................................................................................2711.001.00---------------------------------------------------------1.00----------------------------------------
.....................................................................................................................TTGTTAGAGACCCATGATGGAGTCCAGGACAAAATA.........................................................................3611.001.00---------------------------------------------------------------------------------1.00----------------
..........................ACAAGCTGTTCGAATTTTT.....................................................................................................................................................................................191.000.00----------------------------------------1.00---------------------------------------------------------
......................GTTAACAAGCTGTTCGAAATTA......................................................................................................................................................................................221.000.00------------------------------------------1.00-------------------------------------------------------
........TTCTGAAGACTGTAGTTAACAAGCTGTTC.............................................................................................................................................................................................2911.001.00-----------------------------------------------1.00--------------------------------------------------
..............AGACTGTAGTTAACAAGCTGTTC.............................................................................................................................................................................................2311.001.00-----------------------------------------------------1.00--------------------------------------------
........TTCTGAAGACTGTAGTTAACA.....................................................................................................................................................................................................2111.001.00-----1.00--------------------------------------------------------------------------------------------
..................................................................................................................................................................................................AGGATATGGCTTGTGATACTTTT.........2311.002.00-----------------------1.00--------------------------------------------------------------------------
.........................AACAAGCTGTTCGAATTCATGCATGAGA.............................................................................................................................................................................281.000.00--------------------------------------------------------------------------1.00-----------------------
................................................................................................................................................................................AGACCCATGATGGAGTCCAGGA............................2221.001.00--------------------------------------------------------1.00-----------------------------------------
.........................................................................................................AATGTTTTTGTCTTGTTAGAGACCCATGATGGAGTCCAGGACAAAATAAATGAATATTTTTGTCTTGTTAG..................................................7111.001.00--------------------------------------------1.00-----------------------------------------------------
...GAAATTTCTGAAGACTGTA............................................................................................................................................................................................................1911.001.00----------1.00---------------------------------------------------------------------------------------
........TTCTGAAGACTGTAGTTAAC......................................................................................................................................................................................................2011.001.00--------------------------------------1.00-----------------------------------------------------------
....AAATTTCTGAAGACTGTAGTTAACA.....................................................................................................................................................................................................2511.001.00---------------1.00----------------------------------------------------------------------------------
.................................................................................................................................CATGATGGAGTCCAGGACA..............................................................................1911.001.00--1.00-----------------------------------------------------------------------------------------------
.............AAGACTGTAGTTAACAAGCTGTTCGAATTCATG....................................................................................................................................................................................3311.001.00---------------------------------------------------------------------------------------1.00----------
.........TCTGAAGACTGTAGTTAACAAGCTGTTCG............................................................................................................................................................................................2911.001.00-1.00------------------------------------------------------------------------------------------------
.......................TTAACAAGCTGTTCGAATTCATGC...................................................................................................................................................................................2411.001.00----------------------------------------------------------------------------------1.00---------------
...........TGAAGACTGTAGTTAACAA....................................................................................................................................................................................................1911.001.00-------------------1.00------------------------------------------------------------------------------
..........CTGAAGACTGTAGTTAACAAGCTGTTCGAA..........................................................................................................................................................................................3011.001.00-------------1.00------------------------------------------------------------------------------------
.................CTGTAGTTAACAAGCTGTTCGAA..........................................................................................................................................................................................2311.001.00---------------------------------------------------1.00----------------------------------------------
.................................................................................TATTTTTATTGAAGAAACAAA............................................................................................................................211.000.00-----------------------------------------------------------------1.00--------------------------------
......................................................................................................................................................................................................TATGGCTTGTGATACTTTCACTA.....231.000.00----------------------------------1.00---------------------------------------------------------------
..........CTGAAGACTGTAGTTAACAAGCTGTTCGA...........................................................................................................................................................................................2911.001.00----------------------------------------------------------------------------1.00---------------------
..GGAAATTTCTGAAGACTGTAGTTAA.......................................................................................................................................................................................................2511.001.00-------1.00------------------------------------------------------------------------------------------
.................................................................................................................................................................................................CAGGATATGGCTTGTGAT...............1811.001.00--------------1.00-----------------------------------------------------------------------------------
.........TCTGAAGACTGTAGTTAACAAGCA.................................................................................................................................................................................................2411.006.00-----1.00--------------------------------------------------------------------------------------------
..................................................................................................................................................................................................AGGATATGGCTTGTGATTT.............191.000.00----------------------------------------1.00---------------------------------------------------------
..GGAAATTTCTGAAGACTGTAGT..........................................................................................................................................................................................................2211.001.00-------------------------------------------------1.00------------------------------------------------
.........TCTGAAGACTGTAGTTATCTG....................................................................................................................................................................................................211.000.00---------------------------------------------------------------1.00----------------------------------
......................................................................................................................................................................................................TATGGCTTGTGATACTTTCAATA.....231.000.00----------------------------------1.00---------------------------------------------------------------
.................CTGTAGTTAACAAGCTGTT..............................................................................................................................................................................................1911.001.00--------------------1.00-----------------------------------------------------------------------------
.................CTGTAGTTAACAAGCTGTTC.............................................................................................................................................................................................2011.001.00--------------------1.00-----------------------------------------------------------------------------
....AAATTTCTGAAGACTGTAGTTAA.......................................................................................................................................................................................................2311.001.00-1.00------------------------------------------------------------------------------------------------
.....AATTTCTGAAGACTGTAGTTAACAAGC..................................................................................................................................................................................................2711.001.00-----------------------------------------------------------1.00--------------------------------------
.............AAGACTGTAGTTAACAAGCTG................................................................................................................................................................................................2111.001.00------------------------------------------------------------------------------------1.00-------------
..GGAAATTTCTGAAGACTGTAGTTAACA.....................................................................................................................................................................................................2711.001.00-1.00------------------------------------------------------------------------------------------------
.....AATTTCTGAAGACTGTAGTTAACA.....................................................................................................................................................................................................2411.001.00----------------------------------------------------------1.00---------------------------------------
................ACTGTAGTTAACAAGCTGTTCGAATTCAT.....................................................................................................................................................................................2911.001.00-------1.00------------------------------------------------------------------------------------------
.TGGAAATTTCTGAAGACTGTAG...........................................................................................................................................................................................................2211.001.00---------------1.00----------------------------------------------------------------------------------
........TTCTGAAGACTGTAGTTAACAA....................................................................................................................................................................................................2211.001.00-------------1.00------------------------------------------------------------------------------------
...........TGAAGACTGTAGTTAAC......................................................................................................................................................................................................1711.001.00-1.00------------------------------------------------------------------------------------------------
...........................................................................................................................................TCCAGGACAAAATAATCAG....................................................................191.000.00------------------------------------------------1.00-------------------------------------------------
......ATTTCTGAAGACTGTAGTTA........................................................................................................................................................................................................2011.001.00---------------------------------------------------------------------------1.00----------------------
.........................AACAAGCTGTTCGAATTCAT.....................................................................................................................................................................................2011.001.001.00-------------------------------------------------------------------------------------------------
.....AATTTCTGAAGACTGTAGTTAA.......................................................................................................................................................................................................2211.001.00------1.00-------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................ATATGGCTTGTGATACTTT..........1911.001.00--------------------------------1.00-----------------------------------------------------------------
.................CTGTAGTTAACAAGCTGTTCG............................................................................................................................................................................................2111.001.00------------------------------------1.00-------------------------------------------------------------
....AAATTTCTGAAGACTGTAG...........................................................................................................................................................................................................1911.001.00---------------1.00----------------------------------------------------------------------------------
.......TTTCTGAAGACTGTAGTTAATA.....................................................................................................................................................................................................221.000.00-----1.00--------------------------------------------------------------------------------------------
.......TTTCTGAAGACTGTAGTTAACAAGCTGT...............................................................................................................................................................................................2811.001.00-------------------------------1.00------------------------------------------------------------------
...................................................................................................................................................................................................GGATATGGCTTGTGATACTTTCA........2311.001.00---------------------------------1.00----------------------------------------------------------------
...GAAATTTCTGAAGACTGTAG...........................................................................................................................................................................................................2011.001.00-1.00------------------------------------------------------------------------------------------------
...........TGAAGACTGTAGTTAACAAG...................................................................................................................................................................................................2011.001.00-----------1.00--------------------------------------------------------------------------------------
............GAAGACTGTAGTTAAC......................................................................................................................................................................................................1611.001.00-1.00------------------------------------------------------------------------------------------------
.......................TTAACAAGCTGTTCGAATTCA......................................................................................................................................................................................2111.001.00--------------------------------------------------------------------1.00-----------------------------
......................................................................................................................................................................................ATGATGGAGTCCAGGATATG........................2011.001.00-------------1.00------------------------------------------------------------------------------------
................................................................................................................................................................................AGACCCATGATGGAGTCCAGGATATGGCTGGG..................321.000.00---------------------------------------------------------------------1.00----------------------------
..................................................................................................................................................................................................AGGATATGGCTTGTGATAC.............1911.001.00----------1.00---------------------------------------------------------------------------------------
.......TTTCTGAAGACTGTAGTTAAC......................................................................................................................................................................................................2111.001.00------------------------------------------------------------------------------1.00-------------------
..GGAAATTTCTGAAGACTGTAGTTAACAAGCTGTT..............................................................................................................................................................................................3411.001.00-----------------------------------------------------------------------------------------1.00--------
.......................................................................................................................................................................................TGATGGAGTCCAGGATATG........................1911.001.00-------------------------------------------------------1.00------------------------------------------
................ACTGTAGTTAACAAGCTGTTC.............................................................................................................................................................................................2111.001.00--------------------1.00-----------------------------------------------------------------------------
....AAATTTCTGAAGACTGTAGTTAACAA....................................................................................................................................................................................................2611.001.00-----------1.00--------------------------------------------------------------------------------------
..................TGTAGTTAACAAGCTGTTCGAATTC.......................................................................................................................................................................................2511.001.00----------------------------1.00---------------------------------------------------------------------
.TGGAAATTTCTGAAGACTGTAGTTAACAAGCT.................................................................................................................................................................................................3211.001.00-------------------------------------------------------------------------1.00------------------------
..........CTGAAGACTGTAGTTAACAAG...................................................................................................................................................................................................2111.001.00------------------------------------------------------1.00-------------------------------------------
.TGGAAATTTCTGAAGACTGT.............................................................................................................................................................................................................2011.001.00-1.00------------------------------------------------------------------------------------------------
.................CTGTAGTTAACAAGCTGTTCGAATT........................................................................................................................................................................................2511.001.001.00-------------------------------------------------------------------------------------------------
..................................................................................................................GTCTTGTTAGAGACCCATGATGGAGTCCAGGACAAAATAAATGAATATTTTTGTCTTGTTAG..................................................6211.001.00-----------------1.00--------------------------------------------------------------------------------
..................................................................................................................................................................................................AGGATATGGCTTGTGGTA..............181.000.00--------------------------------------------------------------1.00-----------------------------------
..................................................................................................................................................................................................AGGATATGGCTTGTGGTAC.............191.000.00--------------------------------1.00-----------------------------------------------------------------
.......................TTAACAAGCTGTTCGAATTC.......................................................................................................................................................................................2011.001.00-1.00------------------------------------------------------------------------------------------------
..........................ACAAGCTGTTCGAATTCAT.....................................................................................................................................................................................1911.001.00-----------------------------------------------------------------------1.00--------------------------
.......................TTAACAAGCTGTTCGAATTCATG....................................................................................................................................................................................2311.001.00--------------------------------------------------1.00-----------------------------------------------
....AAATTTCTGAAGACTGTAGTTAACAAGCTGC...............................................................................................................................................................................................311.000.00------------------------1.00-------------------------------------------------------------------------
..........CTGAAGACTGTAGTTAACAA....................................................................................................................................................................................................2011.001.00----------------------------------------------1.00---------------------------------------------------
....................TAGTTAACAAGCTGTTCGAATTCATGCATGAGAC............................................................................................................................................................................341.000.00---------------------------1.00----------------------------------------------------------------------
..........................ACAAGCTGTTCGAATTCA......................................................................................................................................................................................1811.001.00-----------------------------------1.00--------------------------------------------------------------
............GAAGACTGTAGTTAACAAGCTGGTC.............................................................................................................................................................................................251.000.00-1.00------------------------------------------------------------------------------------------------
...GAAATTTCTGAAGACTGTAGTTAAC......................................................................................................................................................................................................2511.001.00----------------------------------------------------1.00---------------------------------------------
..................TGTAGTTAACAAGCTGTTCGAATTCATGCATGA...............................................................................................................................................................................331.000.00-------------------------------------------------------------------------------1.00------------------
..........CTGAAGACTGTAGTTAA.......................................................................................................................................................................................................1730.330.33--------------------------------------------------------------------------------------------0.33-----
.........TCTGAAGACTGTAGTT.........................................................................................................................................................................................................1650.200.20-0.20------------------------------------------------------------------------------------------------
..........CTGAAGACTGTAGTT.........................................................................................................................................................................................................1580.120.12-0.12------------------------------------------------------------------------------------------------

Antisense strand
CTGGAAATTTCTGAAGACTGTAGTTAACAAGCTGTTCGAATTCATGCATGGTAAATCTCTTTCTTTACTATATTTTGCTTTTATTTTTATTGAAGAAAATAAATGAATGTTTTTGTCTTGTTAGAGACCCATGATGGAGTCCAGGACAAAATAAATGAATATTTTTGTCTTGTTAGAGACCCATGATGGAGTCCAGGATATGGCTTGTGATACTTTCATTAAAATA
...............................................................................(((((((((......))))))))).......((((((((((.....(((((.....)).)))))))))))))...........................................................................
............................................................................77.........................................................................152........................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR343336SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343334SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM532874(GSM532874)
G699T. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359195(GSM359195)
HepG2_TAP_depl. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR343337SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
..............................ATGAATTCGAACAGC..................................................................................................................................................................................... 15625.1725.17-1.5017.67---------0.33---4.00--------0.17-------0.17-----------0.330.170.17-------------------------------------------0.170.17---0.170.17
..............................GCTGTTCGAATTCATGAT.................................................................................................................................................................................. 184.000.00---------4.00----------------------------------------------------------------------------------------
..............................CATGAATTCGAACAGC.................................................................................................................................................................................... 1611.001.00-------------------------------------------------------------------1.00------------------------------
...........................................................................................GAAGAAAATAAATGAATGTGTT................................................................................................................. 221.000.00------------------------------1.00-------------------------------------------------------------------
...........................................................................................GAAGAAAATAAATGAATGG.................................................................................................................... 191.000.00------------------------------------------------------------------------------------------1.00-------
................................GCATGAATTCGAACA................................................................................................................................................................................... 1511.001.00------------1.00-------------------------------------------------------------------------------------
..............................GCTGTTCGAATTCATAGGA................................................................................................................................................................................. 190.170.00-------------------------0.17------------------------------------------------------------------------
..............................GCTGTTCGAATTCATGA................................................................................................................................................................................... 170.170.00--0.17-----------------------------------------------------------------------------------------------
..............................GCTGTTCGAATTCATACC.................................................................................................................................................................................. 180.170.00--0.17-----------------------------------------------------------------------------------------------
..............................GCTGTTCGAATTCATATGA................................................................................................................................................................................. 190.170.00----------------0.17---------------------------------------------------------------------------------