ID: uc002sbe.2_intron_23_0_chr2_61463046_r
GENE: (56)
chr2:61462996-61463210-


(1)
AGO2.ip 		(2)
B-CELL 		(2)
BRAIN 		(1)
BREAST 		(11)
CELL-LINE 		(3)
CERVIX 		(3)
HEART 		(3)
HELA 		(1)
KIDNEY 		(4)
OTHER 		(14)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AGTTAAGCACTTCCTTTGTCCTAGAGACATTTATTCATTCTAAAGAAAAGGTATGTGTTTTCTACTATGGATTTTTTTGTCATTTATGTTTTTATCAGATATCTTTTGGTTTTTGTTATTGTTGGCTCAGAAGTTCATATGCTTTGACTGACTTTTCTTTTCTAGCCCACGATGCTTCAGTGGATTGAACTGTTGACGAAACAGTTTAATAATAG
........................................................................................................................(((((.((((.(((......))))))))))))...............................................................
...................................................................................................100...............................................................165................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040009(GSM532894)
G727T. (cervix)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR040010(GSM532895)
G529N. (cervix)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040037(GSM532922)
G243T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR343336SRR343337
...............................................................................................................................................TTGACTGACTTTTCTTTTCTAGA.................................................231103.0017.00101.00--------------------1.00-----1.00------------------
...............................................................................................................................................TTGACTGACTTTTCTTTTCTAGAA................................................24129.0017.0029.00---------------------------------------------
..............................................................................................................................................TTTGACTGACTTTTCTTTTCTAGA.................................................24121.006.0020.00------------------------------------------1.00--
...............................................................................................................................................TTGACTGACTTTTCTTTTCTAG..................................................22117.0017.007.00----------2.00-----2.00----1.00-----1.001.001.001.00------1.00-------
..............................................................................................................................................TTTGACTGACTTTTCTTTTCTAGAA................................................2518.006.008.00---------------------------------------------
..............................................................................................................................................TTTGACTGACTTTTCTTTTCTAG..................................................2316.006.003.00----2.00-------1.00--------------------------------
...............................................................................................................................................TTGACTGACTTTTCTTTTCTAGC.................................................2315.005.005.00---------------------------------------------
............................................................................................................................................GCTTTGACTGACTTTTCTTT.......................................................2015.005.00---3.00-----------2.00------------------------------
...............................................................................................................................................TTGACTGACTTTTCTTTTCTA...................................................2115.005.005.00---------------------------------------------
...................................................................................................................................................................................GTGGATTGAACTGTTGACGAAACATC..........264.000.00--4.00-------------------------------------------
..............................................................................................................................................TTTGACTGACTTTTCTTTTCTAGT.................................................2413.006.003.00---------------------------------------------
....................................................................................................................................................................................TGGATTGAACTGTTGACGAAAC.............2213.003.00--------2.00--------------------------1.00----------
........................................................................................................TTTGGTTTTTGTTATCCTC............................................................................................193.000.00----1.00-----2.00-----------------------------------
.................................................................................................................................................................................CAGTGGATTGAACTGTTGACGA................2212.002.00--------------2.00-------------------------------
.........................................................................................................................................................................CGATGCTTCAGTGGATTGAACTGTT.....................2512.002.00------2.00---------------------------------------
.....................................................................................................................................................................................GGATTGAACTGTTGACGAAA..............2012.002.00----------------2.00-----------------------------
..................................................................................................................................................................................AGTGGATTGAACTGTTGACG.................2012.002.00---------1.00-------------------------------1.00----
...............................................................................................................................................TTGACTGACTTTTCTTTTCTAGAAA...............................................2512.0017.002.00---------------------------------------------
................................ATTCATTCTAAAGAAAAGCCCA.................................................................................................................................................................2211.001.00------------------------------------1.00---------
........................................................................................................................................................................................TTGAACTGTTGACGAAAC.............1811.001.00----------------------------------1.00-----------
.........................................................................................................................................................................................TGAACTGTTGACGAAAC.............1711.001.00------------------1.00---------------------------
..................................................................ATGGATTTTTTTGTCAGGGA.................................................................................................................................201.000.00-1.00--------------------------------------------
..................................................................ATGGATTTTTTTGTCAGGC..................................................................................................................................191.000.00-1.00--------------------------------------------
.............................................................................................................TTTTTGTTATTGTTGGCTCAGA....................................................................................2211.001.00--------------------1.00-------------------------
.................................................................................................................................................GACTGACTTTTCTTTTCTAGA.................................................211.000.001.00---------------------------------------------
.........................................................................................................................................................................CGATGCTTCAGTGGATTGA...........................1911.001.00---------------------------------------1.00------
.................................................................................................................................................GACTGACTTTTCTTTTCT....................................................1821.001.001.00---------------------------------------------
..........................................................................................................................................................................GATGCTTCAGTGGATTGAACTGT......................2311.001.00--------------------------1.00-------------------
.......................................................................................................................................................................................ATTGAACTGTTGACG.................1511.001.00------------1.00---------------------------------
................................................................................................................................................TGACTGACTTTTCTTTTCTAGAA................................................231.000.001.00---------------------------------------------
......................................................................................................................................................ACTTTTCTTTTCTAGCTGTA.............................................201.000.00------------------------------------------1.00---
........................................................................................................................................................................................TTGAACTGTTGACGAA...............1611.001.00-------1.00--------------------------------------
.......................................................................................................................................................................................ATTGAACTGTTGACGAAA..............1811.001.00----------------------------------------1.00-----
.........................................................................................................................................................TTTCTTTTCTAGCCCAA.............................................171.000.00----1.00-----------------------------------------
................................ATTCATTCTAAAGAAAAG.....................................................................................................................................................................1811.001.00-------1.00--------------------------------------
............................................................................................................................................................................TGCTTCAGTGGATTGAACTGTTG....................2311.001.00------------1.00---------------------------------
......................................................................................................................................................................................GATTGAACTGTTGACGAA...............1811.001.001.00---------------------------------------------
..................................................................ATGGATTTTTTTGTCGGTC..................................................................................................................................191.000.00-1.00--------------------------------------------
.............................................................................................................................................................................GCTTCAGTGGATTGAACTGTTG....................2211.001.00---------1.00------------------------------------
...................................................................................................................................................................................GTGGATTGAACTGTTGACG.................1911.001.00-------------1.00--------------------------------
..................................................................ATGGATTTTTTTGTCAGTGG.................................................................................................................................201.000.00-1.00--------------------------------------------

Antisense strand
AGTTAAGCACTTCCTTTGTCCTAGAGACATTTATTCATTCTAAAGAAAAGGTATGTGTTTTCTACTATGGATTTTTTTGTCATTTATGTTTTTATCAGATATCTTTTGGTTTTTGTTATTGTTGGCTCAGAAGTTCATATGCTTTGACTGACTTTTCTTTTCTAGCCCACGATGCTTCAGTGGATTGAACTGTTGACGAAACAGTTTAATAATAG
........................................................................................................................(((((.((((.(((......))))))))))))...............................................................
...................................................................................................100...............................................................165................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040009(GSM532894)
G727T. (cervix)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR040010(GSM532895)
G529N. (cervix)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040037(GSM532922)
G243T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR343336SRR343337
............................................................................................................................GCTCAGAAGTTCATATCTG........................................................................ 191.000.00------------------------1.00---------------------
...........................................................................................................................................................AATCCACTGAAGCATCGTGGGCTAGAAAAGA............................. 3111.001.00-----------------------1.00----------------------
...................................................................................................................................................CTGACTTTTCTTTTCTGTC................................................. 191.000.00-------------------------------------1.00--------
.............................................................CTACTATGGATTTTTCAG........................................................................................................................................ 181.000.00-------------------1.00--------------------------
.....................................................................................................................................................................................................GAAACAGTTTAATAATTTTA 201.000.00----1.00-----------------------------------------
........................................................................................................................................................TTTTCTTTTCTAGCCTGTA............................................ 191.000.00---------------------------------1.00------------
..........................ACATTTATTCATTCTATTTG......................................................................................................................................................................... 201.000.00--------------------------------1.00-------------
....AAGCACTTCCTTTGTGTAA................................................................................................................................................................................................ 191.000.00-------------------------1.00--------------------
................................................................................CTGATAAAAACATAAATG..................................................................................................................... 1830.670.67--------------------------------------------0.330.33