ID: uc002ryp.1_intron_1_0_chr2_55494772_r.3p
GENE: MTIF2(2)
chr2:55494722-55494971-


(2)
B-CELL 		(1)
BREAST 		(12)
CELL-LINE 		(1)
HEART 		(1)
HELA 		(3)
LIVER 		(1)
OTHER 		(5)
SKIN 		(1)
XRN.ip

Sense strand
GGTAAACAAGTTAATGACTTGTGAATATTTTTAACTTATAAGCAATGAATCCTCAAAGCTTATAAGCGAGTATCAAGACATGTGATATGGTTTTAAAATAGCTGATGATAAAGTATATACATCATCTCATTTTCTCCTCTTAGTCTTGTAATAGGAAGGACAGATATTCAAACACTTATTTATTTATTTATTTTTAACAGAGATCCGGAAAATGAGGCCCATAGGAAACAAGTGACTTGCTGAGTCCAGA
..............................................................................................................................................(((((.........))))).........................................................................................
.........................................................................................................................................138...........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
...........................................................................................................................................................................ACACTTATTTATTTATTTATG..........................................................21187.000.0076.0083.0018.009.00---------1.00--------------
.............................................................................................................................................................................ACTTATTTATTTATTTATTTTTCAAG...................................................2617.000.001.00-9.005.00-2.00----------------------
...........................................................................................................................................................................ACACTTATTTATTTATTTATTTTTTG.....................................................2615.000.006.005.002.002.00------------------------
............................................................................................................................................................................CACTTATTTATTTATTTATCTAG.......................................................236.000.00--4.002.00------------------------
............................................................................................................................................................................CACTTATTTATTTATTTATTTTTTAAG...................................................276.000.001.001.001.003.00------------------------
..............................................................................................................................................................................CTTATTTATTTATTTATTTTTCCAG...................................................255.000.00--2.003.00------------------------
.............................................................................................................................................................................ACTTATTTATTTATTTATTTTTATTG...................................................265.000.002.00-1.002.00------------------------
..........................................................................................................................................................................AACACTTATTTATTTATTTATTTTTAG.....................................................274.000.002.002.00--------------------------
..........................................................................................................................................................................AACACTTATTTATTTATCTAT...........................................................214.000.00---3.00-1.00----------------------
..........................................................................................................................................................................AACACTTATTTATTTATTTATTTATTG.....................................................273.000.00-1.001.00--1.00----------------------
.............................................................................................................................................................................ACTTATTTATTTATTTATTATTG......................................................233.000.001.00-2.00-------------------------
...........................................................................................................................................................................ACACTTATTTATTTATTTATTAATG......................................................253.000.002.001.00--------------------------
...........................................................................................................................................................................ACACTTATTTATTTATTCACG..........................................................213.000.00--3.00-------------------------
.............................................................................................................................................................................ACTTATTTATTTATTTATTTTTAGGCC..................................................272.000.00----2.00-----------------------
..........................................................................................................................................................................AACACTTATTTATTTATTTATTCTG.......................................................252.000.00--1.001.00------------------------
.............................................................................................................................................................................................................CGGAAAATGAGGCCCATAG..........................1912.002.00-------2.00--------------------
.............................................................................................................................................................................ACTTATTTATTTATTTATTTCCAG.....................................................242.000.00--2.00-------------------------
........................................................................................................................................................................................................AGATCCGGAAAATGAGGCCCAT............................2212.002.00------2.00---------------------
............................................................................................................................................................................CACTTATTTATTTATTTATTTTTTTG....................................................262.000.00-1.001.00-------------------------
.............................................................................................................................................................................ACTTATTTATTTATTTATTTTTATAG...................................................262.000.00-1.00-1.00------------------------
..............................................................................................................................................................................CTTATTTATTTATTTATTTTCAAG....................................................242.000.00--1.001.00------------------------
.............................................................................................................................................................................ACTTATTTATTTATTTATTCCAG......................................................232.000.00--1.001.00------------------------
...........................................................................................................................................................................ACACTTATTTATTTATTTATTTTTCATG...................................................282.000.001.00-1.00-------------------------
.............................................................................................................................................................................ACTTATTTATTTATTTATTTTTCTTG...................................................262.000.00-2.00--------------------------
..........................................................................................................................................................................................................ATCCGGAAAATGAGGCC...............................1711.001.00---------1.00------------------
............................................................................................................................................................................CACTTATTTATTTATTTATTTTTAAAT...................................................271.000.00----1.00-----------------------
................................................................................................................................................CTTGTAATAGGAAGGACAGATATTCAAAC.............................................................................2911.001.00-----------------1.00----------
..............................................................................................................................................GTCTTGTAATAGGAAGGA..........................................................................................1811.001.00--------1.00-------------------
...........................................................................................................................................................................ACACTTATTTATTTATTTATTTTTAG.....................................................261.000.00---1.00------------------------
.............................................................................................................................................................................ACTTATTTATTTATTTATATTG.......................................................221.000.00-1.00--------------------------
...........................................................................................................................................................................ACACTTATTTATTTATTTATTTCTCG.....................................................261.000.00--1.00-------------------------
.............................................................................................................................................................................ACTTATTTATTTATTTATTCTTG......................................................231.000.00----1.00-----------------------
..............................................................................................................................................................................CTTATTTATTTATTTATTTTTCACA...................................................251.000.00---1.00------------------------
...........................................................................................................................................................................ACACTTATTTATTTATTTATTTTTTAAG...................................................281.000.00--1.00-------------------------
.............................................................................................................................................................................................................CGGAAAATGAGGCCCATAGGA........................2111.001.00--------------------1.00-------
.............................................................................................................................................................................ACTTATTTATTTATTTATTTTCCG.....................................................241.000.00---1.00------------------------
............................................................................................................................................................................................................................ATAGGAAACAAGTGACTTGCTG........2211.001.00----------------------1.00-----
...........................................................................................................................................................................ACACTTATTTATTTATTTCA...........................................................201.000.00---1.00------------------------
.......................................................................................................................................................................................................GAGATCCGGAAAATGA...................................1611.001.00----------1.00-----------------
.....................................................................................................................................................................ATTCAAACACTTATTTTTGT.................................................................201.000.00---------------1.00------------
.............................................................................................................................................................................ACTTATTTATTTATTTATTTTTACGG...................................................261.000.00----1.00-----------------------
............................................................................................................................................................................CACTTATTTATTTATTTATTATTG......................................................241.000.00---1.00------------------------
.........................................................................................................................................................................AAACACTTATTTATTTTTA..............................................................191.000.00---1.00------------------------
...........................................................................................................................................................................ACACTTATTTATTTATTTACG..........................................................211.000.00--1.00-------------------------
............................................................................................................................................................................................................................ATAGGAAACAAGTGACTTG...........1911.001.00------------------1.00---------
.............................................................................................................................................................................ACTTATTTATTTATTTATTTTGGCC....................................................251.000.00----1.00-----------------------
...........................................................................................................................................................AAGGACAGATATTCAAACACTTATTTATTTATTTATTTTTAACAG..................................................4511.001.00-------------------1.00--------
............................................................................................................................................................................CACTTATTTATTTATTTACG..........................................................201.000.001.00---------------------------
.........................TATTTTTAACTTATAAGCAATGA..........................................................................................................................................................................................................2311.001.00------------------------1.00---
...........................................................................................................................................................................ACACTTATTTATTTATTAATG..........................................................211.000.001.00---------------------------
..............................................................................................................................................................................................................................AGGAAACAAGTGACTTGCTG........2011.001.00--------------1.00-------------
...........................................................................................................................................................................ACACTTATTTATTTATCTAG...........................................................201.000.00--1.00-------------------------
...........................................................................................................................................................................ACACTTATTTATTTATTTATTAG........................................................231.000.00---1.00------------------------
...........................................................................................................................................................................ACACTTATTTATTTATTTATTATG.......................................................241.000.001.00---------------------------
.............................................................................................................................................................................ACTTATTTATTTATTTATTTTCGTG....................................................251.000.00----1.00-----------------------
...........................................................................................................................................................................ACACTTATTTATTTATTTATTTTTATTG...................................................281.000.00-1.00--------------------------
.............................................................................................................................................................................................................................TAGGAAACAAGTGACTTGCT.........2011.001.00--------------------------1.00-
............................................................................................................................................................................CACTTATTTATTTATTTATTTTTTTAG...................................................271.000.00--1.00-------------------------
...........................................................................................................................................................................ACACTTATTTATTTATTTATTTTTTTG....................................................271.000.00--1.00-------------------------
.............................................................................................................................................................................ACTTATTTATTTATTTATTTTTAATAG..................................................271.000.001.00---------------------------
..................................................................................................................ATATACATCATCTCATTTTCTCCTCTCAG...........................................................................................................291.000.00--1.00-------------------------
.............................................................................................................................................................................ACTTATTTATTTATTTATTTTTACG....................................................251.000.00---1.00------------------------
............................................................................................................................................................................CACTTATTTATTTATTTATTTTACT.....................................................251.000.001.00---------------------------
......................................................................................................................................................................................TTTATTTATTTTTAACAGAGATCCGGA.........................................2711.001.00----------------1.00-----------
...........................................................................................................................................................................ACACTTATTTATTTATTTATTTTCTG.....................................................261.000.00--1.00-------------------------
...........................................................................................................................................................................ACACTTATTTATTTATTTCG...........................................................201.000.00--1.00-------------------------
.............................................................................................................................................................................ACTTATTTATTTATTTATTTTTCAG....................................................251.000.00---1.00------------------------
.............................................................................................................................................................................ACTTATTTATTTATTTATTTTTATAGT..................................................271.000.00----1.00-----------------------
..........................................................................................................................................................GAAGGACAGATATTCAAACACTTA........................................................................2411.001.00-----------------------1.00----
...........................................................................................................................................................................ACACTTATTTATTTATTTATTTTTTTAG...................................................281.000.00--1.00-------------------------
...........................................................................................................................................................................ACACTTATTTATTTATTTATTTGTG......................................................251.000.001.00---------------------------
...........................................................................................................................................................................ACACTTATTTATTTATTTATTTCTG......................................................251.000.00----1.00-----------------------
...........................................................................................................................................................................ACACTTATTTATTTATTTACTG.........................................................221.000.001.00---------------------------
...........................................................................................................................................................................ACACTTATTTATTTATTTATGAG........................................................231.000.00-----1.00----------------------
............................................................................................................................................................................CACTTATTTATTTATTTATTCTTG......................................................241.000.00--1.00-------------------------
..........................................................................................................................................................................AACACTTATTTATTTATTTATTTTTG......................................................261.000.001.00---------------------------
.............................................................................................................................................................................ACTTATTTATTTATTTATTTCTAG.....................................................241.000.00--1.00-------------------------
..........................................................................................................................................................................AACACTTATTTATTTTTG..............................................................181.000.00--1.00-------------------------
.............................................................................................................................................................................ACTTATTTATTTATTTATTTTTCGG....................................................251.000.00----1.00-----------------------
.....................................................................................................................................................................ATTCAAACACTTATTTATTTATTTATTTTTAACAG..................................................3511.001.001.00---------------------------
...........................................................................................................................................................................ACACTTATTTATTTATTTATTAAGG......................................................251.000.00-1.00--------------------------
..........................................................................................................................................................................AACACTTATTTATTTATTTATTTATAG.....................................................271.000.00-----1.00----------------------
.............................................................................................................................................................................ACTTATTTATTTATTTATTTTCAAG....................................................251.000.00----1.00-----------------------
............................................................................................................................................................................CACTTATTTATTTATTTATTTTTCG.....................................................251.000.001.00---------------------------
.............................................................................................................................................................................ACTTATTTATTTATTTATTTTCAGG....................................................251.000.00----1.00-----------------------
................................................................................................................................................CTTGTAATAGGAAGGAC.........................................................................................1720.500.50--------0.50-------------------

Antisense strand
GGTAAACAAGTTAATGACTTGTGAATATTTTTAACTTATAAGCAATGAATCCTCAAAGCTTATAAGCGAGTATCAAGACATGTGATATGGTTTTAAAATAGCTGATGATAAAGTATATACATCATCTCATTTTCTCCTCTTAGTCTTGTAATAGGAAGGACAGATATTCAAACACTTATTTATTTATTTATTTTTAACAGAGATCCGGAAAATGAGGCCCATAGGAAACAAGTGACTTGCTGAGTCCAGA
..............................................................................................................................................(((((.........))))).........................................................................................
.........................................................................................................................................138...........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
........................................AGCAATGAATCCTCAAAG................................................................................................................................................................................................ 181.000.00-----------1.00----------------
.................................................................................................................................................TTGTAATAGGAAGGACC........................................................................................ 171.000.00-------------------------1.00--
..........................................................................................................................................................................................................................................ACTTGCTGAGTCCAGGTGC 191.000.00---------------------1.00------
......................GAATATTTTTAACTTATAAGT............................................................................................................................................................................................................... 211.000.00------------1.00---------------
.................................................................................................................AAATGAGATGATGTATATA...................................................................................................................... 1940.250.25---------------------------0.25