ID: uc002ryn.2_intron_8_0_chr2_55479790_r.3p
GENE: (8)
chr2:55479740-55479989-


(1)
AGO2.ip
(10)
B-CELL
(23)
BREAST
(73)
CELL-LINE
(4)
FIBROBLAST
(5)
HEART
(6)
HELA
(1)
KIDNEY
(5)
LIVER
(1)
OTHER
(2)
RRP40.ip
(46)
SKIN
(4)
UTERUS
(1)
XRN.ip

Sense strand
AAAAAAACCCATAAGAATCTCACTGGCATTTTATCACTTTTCATTGTGAAATGATGATCTGTGTTCTGATTAAGATTAATGGAAGGAATAAAATTATTTTAAAGAATTATTGATGGTTTCTGATAATGTCGCATATATTCTTTGGTATTAAGGAAGTACATGTTTGAATCCTTGATGTTCTTGAATTTCTGTTTCCACAGTCTCTCTGCCTTCTGGGGAAAAGATAACTTTTCTTGATACTCCAGGACAT
............................................((((.........(((((..(((.....)))...))))).(((((((((((......(((((.((((((.((.(((.(((.((((.((.....(((((((....)))))))))))))))).))).))))))))))))).))))).))))))))))...................................................
............................................45.........................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR029127(GSM416756)
A549. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR191608(GSM715718)
193genomic small RNA (size selected RNA from . (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR029129(GSM416758)
SW480. (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR037931(GSM510469)
293GFP. (cell line)
GSM359204(GSM359204)
HepG2_nucl_low. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038860(GSM458543)
MM426. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM359190(GSM359190)
HepG2_3pM_4. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM359192(GSM359192)
HepG2_3pM_6. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM359191(GSM359191)
HepG2_3pM_5. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
GSM359187(GSM359187)
HepG2_2pM_1. (cell line)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038863(GSM458546)
MM603. (cell line)
GSM359189(GSM359189)
HepG2_2pm_3. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
GSM416733(GSM416733)
HEK293. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR038859(GSM458542)
MM386. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR038857(GSM458540)
D20. (cell line)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR029128(GSM416757)
H520. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR038862(GSM458545)
MM472. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR029124(GSM416753)
HeLa. (hela)
SRR191555(GSM715665)
195genomic small RNA (size selected RNA from . (breast)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029126(GSM416755)
143B. (cell line)
GSM359205(GSM359205)
HepG2_nucl_up. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR189784GSM359200(GSM359200)
hepg2_tap_pasr_a. (cell line)
SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM359211(GSM359211)
hepg2_biotin_hl_2a. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
GSM359209(GSM359209)
hepg2_biotin_el_hl_a. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
GSM359201(GSM359201)
hepg2_tap_pasr_b. (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)
GSM359207(GSM359207)
HepG2_tot_up. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR191494(GSM715604)
157genomic small RNA (size selected RNA from . (breast)
SRR191442(GSM715552)
107genomic small RNA (size selected RNA from . (breast)
GSM359193(GSM359193)
HepG2_3pM_7. (cell line)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191511(GSM715621)
161genomic small RNA (size selected RNA from . (breast)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
TAX577579(Rovira)
total RNA. (breast)
SRR191609(GSM715719)
194genomic small RNA (size selected RNA from . (breast)
SRR191423(GSM715533)
137genomic small RNA (size selected RNA from . (breast)
SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR191533(GSM715643)
136genomic small RNA (size selected RNA from . (breast)
GSM359212(GSM359212)
hepg2_biotin_hl_2b. (cell line)
SRR038856(GSM458539)
D11. (cell line)
GSM359203(GSM359203)
hepg2_untreated_b. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR343337
..............................................TGAAATGATGATCTGTGTTCTGATT...................................................................................................................................................................................2511847.001847.00382.00311.0065.00101.0099.0085.0077.0057.0050.0039.0030.0018.0029.0024.0014.006.0011.0016.0015.0014.0017.005.0015.0012.0013.009.0011.0011.0012.0012.006.002.008.00--6.008.003.007.005.008.006.008.008.00-4.005.003.005.005.002.005.004.004.004.005.001.005.001.005.004.004.00-5.004.004.005.005.003.005.005.004.003.004.002.004.002.003.003.004.004.003.002.00-1.00-1.001.00-2.002.001.003.00-1.00-2.001.00----2.002.002.001.002.00-2.002.002.001.002.00----1.00--1.002.00-1.001.00-1.00-1.001.00-1.001.001.001.001.001.00--1.001.00-1.001.00--1.00-1.00--1.001.00-1.001.001.00-1.00-1.001.00-1.001.001.001.00----1.001.001.001.00-1.00-1.00--
.............................................GTGAAATGATGATCTGTGTTCTGATT...................................................................................................................................................................................261224.00224.0011.0030.0055.001.00-----2.00--1.004.0015.0012.0010.006.004.004.00-3.00-2.001.002.001.001.00-1.006.00----2.00-1.00-2.00-----1.002.004.002.001.004.001.002.00-1.00-4.00---1.00----------1.001.00---2.00-----1.00------1.001.00--------2.00--------------2.002.002.001.00----1.001.00--------------------1.001.00-------1.00---1.00-----------1.00-----1.00-----
.................................................AATGATGATCTGTGTTCTGATT...................................................................................................................................................................................221127.00127.00---19.0012.0025.0011.0011.006.00-2.0013.00---5.00-----8.00---3.002.00-----1.00----1.00--------------------5.00---------------1.00----------------2.00-----------------------------------------------------------------------------------------
..............................................TGAAATGATGATCTGTGTTCTGAT....................................................................................................................................................................................24151.0051.0014.007.003.00-6.00-5.00----1.00------1.00--------1.001.00-1.007.00----------------------1.00--1.00------1.00----------------1.00---------------------------------------------------------------------------------------------------
...............................................GAAATGATGATCTGTGTTCTGATT...................................................................................................................................................................................24146.0046.0021.009.004.00------------------------------9.00------------------------------------------------------------------------------------2.00----------------------------1.00---------------------------------
.............................................GTGAAATGATGATCTGTGTTCTGATTA..................................................................................................................................................................................27123.0023.003.004.003.003.00--------1.00-----------1.00------1.00-------------1.00-------1.00--------------2.00---------------------------------------------------1.00----------------1.00-----------------------------1.00-------------
.............................................GTGAAATGATGATCTGTGTTCTGAT....................................................................................................................................................................................25118.0018.003.00-12.00------------1.00-------------------------------------------------------------------------------------------------------------1.00------------------------------------1.00------------------
..............................................TGAAATGATGATCTGTGTTC........................................................................................................................................................................................20116.0016.00----------------------------------1.00------1.00--5.00----------------------------------------3.00-------3.00----1.00--1.00-----------1.00-------------------------------------------------------------------
..............................................TGAAATGATGATCTGTGTTCTG......................................................................................................................................................................................22114.0014.007.00------------1.00---1.00----------------1.00---1.00--------------1.00---------------------------------1.00-----------------------------------------------------------------------------------------1.00---
..............................................TGAAATGATGATCTGTGTTCTGATTA..................................................................................................................................................................................26112.0012.00-5.00-------------------1.00-----1.00-----------------1.00------------------------------------------2.00-------------------------------------------------1.00-----------1.00------------------------------
..............................................TGAAATGATGATCTGTGTTCTGA.....................................................................................................................................................................................23110.0010.003.002.00-----------------------------2.00---------------------------------------------1.00---------1.00-----------------1.00---------------------------------------------------------------------------
..............................................TGAAATGATGATCTGTGTTCTTATT...................................................................................................................................................................................2516.006.00---------3.00--1.00------------1.00-----------1.00-----------------------------------------------------------------------------------------------------------------------------------------------
.............................................GTGAAATGATGATCTGTGTTC........................................................................................................................................................................................2116.006.00--------------------------------------------------------------5.00-------------------------------------------------------------------1.00--------------------------------------------------
..............................................TGAAATGATGATCTGTG...........................................................................................................................................................................................1716.006.00----------------------------------3.00------------------------------------------------2.00--------------1.00----------------------------------------------------------------------------------
..............................................TGAAATGATGATCTGTGTTCT.......................................................................................................................................................................................2116.006.001.00---------------------------------2.00---------1.00--------------------1.00-----------------------------------------1.00-------------------------------------------------------------------------
..............................................TGAAATGATGATCTGTGTTCTGCTT...................................................................................................................................................................................2514.0014.00---------1.00-------------------------------------------------1.00-------------------------------------1.00------------------------------------------------------------------------1.00----------
.............................................GTGAAATGATGATCTGTGTTCT.......................................................................................................................................................................................2214.004.00-----------------------------------------------------------------------------------------------3.00-----1.00-------------------------------------------------------------------------------
......................................................TGATCTGTGTTCTGATT...................................................................................................................................................................................1743.503.500.500.750.25-------------0.50-0.75-0.25-------0.50--------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................TGTTCTTGAATTTCTGTTTCCACAG..................................................2513.003.00-------------1.00----1.00--------------------1.00---------------------------------------------------------------------------------------------------------------------------------------------
...............................................GAAATGATGATCTGTGTTCTGAT....................................................................................................................................................................................2313.003.00-2.00-------------------------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------
..............................................TGAAATGATGATCTGTGT..........................................................................................................................................................................................1813.003.00----------------------------------1.00------------------------------------------------1.00----1.00--------------------------------------------------------------------------------------------
..............................................TGAAATGATGATCTGTGTT.........................................................................................................................................................................................1913.003.00--------------------------------------------1.00--------------------------------------------------------------1.00-----1.00-------------------------------------------------------------------
..............................................TGAAATGATGATCTGTGTTCTGATTAAA................................................................................................................................................................................282.000.00--------------------------------------------------------------------------------------2.00----------------------------------------------------------------------------------------------
..................................................ATGATGATCTGTGTTCTGATT...................................................................................................................................................................................2112.002.00---2.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................TGAAATGATGATCTGTGTTCTGATG...................................................................................................................................................................................2512.0051.00-------2.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................TGAAATGATGATCTGTGTTCTGATA...................................................................................................................................................................................2512.0051.001.00---1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.............................................GTGAAATGATGATCTGTGTTCTGATTAAG................................................................................................................................................................................2912.002.00----------------1.00------1.00-------------------------------------------------------------------------------------------------------------------------------------------------------------
.............................................GTGAAATGATGATCTGTGTTCTG......................................................................................................................................................................................2312.002.00--1.00------------------------------------------------------------------------------------------------------------------------------------------1.00---------------------------------------
.............................................GTGAAATGATGATCTGTGTTCTGATTAAA................................................................................................................................................................................292.000.00-------------1.00--1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................TGAAATGATGATCTGTGTTCTGACT...................................................................................................................................................................................2512.0010.00----------1.00------------------------------1.00-------------------------------------------------------------------------------------------------------------------------------------------
.............................................GTGAAATGATGATCTGTGTTCTGA.....................................................................................................................................................................................2412.002.00----------------------------------------------------------------------------------------------------2.00--------------------------------------------------------------------------------
..................................................................TGATTAAGATTAATGGAAGGAATAAAATTATT........................................................................................................................................................3212.002.00--------------------------------1.00-----------------------------------------1.00----------------------------------------------------------------------------------------------------------
.............................................GTGAAATGATGATCTGTGTTCTTATT...................................................................................................................................................................................2612.004.00---------------1.00---------------------1.00-----------------------------------------------------------------------------------------------------------------------------------------------
...................................................TGATGATCTGTGTTCTGATT...................................................................................................................................................................................2012.002.00-2.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................CTCTGCCTTCTGGGGAAAAGA..........................2111.001.00-----------------------------------------------------------------------------------------------------------------------1.00-------------------------------------------------------------
..............................................TGAAATGATGATCTGCA...........................................................................................................................................................................................171.000.00------------------------------------------------------------------------------------------------------------------------------------------------------------------------1.00------------
................................................AAATGATGATCTGTGTTCTGATT...................................................................................................................................................................................2311.001.001.00------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................TGAAATGATGATCTGTGTTCTGATC...................................................................................................................................................................................2511.0051.00----1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................TGAAATGATGATCTGTGTTGATT.....................................................................................................................................................................................2311.003.00----------------------------------------------------------------------------------------------------------------------------1.00--------------------------------------------------------
..............................................TGAAATGATGATCTGTGTTCTGATTG..................................................................................................................................................................................2611.001847.00----------------------------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
..............................................TGAAATGATGATCTGTGTTCTGAA....................................................................................................................................................................................2411.0010.00---------------------------------------------------------------------------------------------------------------1.00---------------------------------------------------------------------
............................................TGTGAAATGATGATCTGTGTTCTGATT...................................................................................................................................................................................2711.001.00------------------------------------------------------------------------------------1.00------------------------------------------------------------------------------------------------
...............................................GAAATGATGATCTGTGTTCTGCTT...................................................................................................................................................................................241.000.001.00------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.............................................GTGAAATGATGATCTGTGTTCTGATTT..................................................................................................................................................................................2711.00224.00-------------------------------------------------------1.00-----------------------------------------------------------------------------------------------------------------------------
.........CATAAGAATCTCACTGGCATTTTATCACT....................................................................................................................................................................................................................2911.001.00-----------------------------------------------------------------------------------------------------------------------1.00-------------------------------------------------------------
...................................................................................................................................................................................CTTGAATTTCTGTTTCCACAG..................................................2111.001.00--------------------------------------------------------1.00----------------------------------------------------------------------------------------------------------------------------
............................................TGTGAAATGATGATCACT............................................................................................................................................................................................181.000.00-------------------------------------------------------------1.00-----------------------------------------------------------------------------------------------------------------------
.............................................GTGAAATGATGATCTGTGTTCTGATTAAGAT..............................................................................................................................................................................3111.001.00------------------------------------------------------------------------------------1.00------------------------------------------------------------------------------------------------
..............................................TGAAATGATGATCTGTGTTCTGGTT...................................................................................................................................................................................2511.0014.00----1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.............................................GTGAAATGATGATCTGTGTTCTGTTT...................................................................................................................................................................................2611.002.00--------------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................TCTCTGCCTTCTGGGGAC..............................181.000.00---------------------------------------------------------------------------------------------------------------------------------------------------------------1.00---------------------
.............................................GTGAAATGATGATCTGTGTTCTGGTT...................................................................................................................................................................................2611.002.00--1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
................................................AAATGATGATCTGTGTTCTGAT....................................................................................................................................................................................2211.001.00--------------------------------------------------------------------------------------------------------------------------1.00----------------------------------------------------------
.................................................AATGATGATCTGTGTTCTTATT...................................................................................................................................................................................221.000.00-------------------------------------1.00-----------------------------------------------------------------------------------------------------------------------------------------------
..............................................TGAAATGATGATCTGTGTTCTGAAT...................................................................................................................................................................................2511.0010.00-------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
......................................................TGATCTGTGTTCTGATTAAGA...............................................................................................................................................................................2111.001.00------------------------------------------------------------------------------1.00------------------------------------------------------------------------------------------------------
.............................................GTGAAATGATGATCTGTGTTCTGATTAAGA...............................................................................................................................................................................3011.001.00-------------------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------
..........................CATTTTATCACTTTTCAT..............................................................................................................................................................................................................1820.500.50------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------0.50
..........................................................................................................................................................................................................................................TGATACTCCAGGACAT1620.500.50-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------0.50-
......................................................TGATCTGTGTTCTGATTA..................................................................................................................................................................................1820.500.50---0.50---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Antisense strand
AAAAAAACCCATAAGAATCTCACTGGCATTTTATCACTTTTCATTGTGAAATGATGATCTGTGTTCTGATTAAGATTAATGGAAGGAATAAAATTATTTTAAAGAATTATTGATGGTTTCTGATAATGTCGCATATATTCTTTGGTATTAAGGAAGTACATGTTTGAATCCTTGATGTTCTTGAATTTCTGTTTCCACAGTCTCTCTGCCTTCTGGGGAAAAGATAACTTTTCTTGATACTCCAGGACAT
............................................((((.........(((((..(((.....)))...))))).(((((((((((......(((((.((((((.((.(((.(((.((((.((.....(((((((....)))))))))))))))).))).))))))))))))).))))).))))))))))...................................................
............................................45.........................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR029127(GSM416756)
A549. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR191608(GSM715718)
193genomic small RNA (size selected RNA from . (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR029129(GSM416758)
SW480. (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR037931(GSM510469)
293GFP. (cell line)
GSM359204(GSM359204)
HepG2_nucl_low. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038860(GSM458543)
MM426. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM359190(GSM359190)
HepG2_3pM_4. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM359192(GSM359192)
HepG2_3pM_6. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM359191(GSM359191)
HepG2_3pM_5. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
GSM359187(GSM359187)
HepG2_2pM_1. (cell line)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038863(GSM458546)
MM603. (cell line)
GSM359189(GSM359189)
HepG2_2pm_3. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
GSM416733(GSM416733)
HEK293. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR038859(GSM458542)
MM386. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR038857(GSM458540)
D20. (cell line)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR029128(GSM416757)
H520. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR038862(GSM458545)
MM472. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR029124(GSM416753)
HeLa. (hela)
SRR191555(GSM715665)
195genomic small RNA (size selected RNA from . (breast)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029126(GSM416755)
143B. (cell line)
GSM359205(GSM359205)
HepG2_nucl_up. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR189784GSM359200(GSM359200)
hepg2_tap_pasr_a. (cell line)
SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM359211(GSM359211)
hepg2_biotin_hl_2a. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
GSM359209(GSM359209)
hepg2_biotin_el_hl_a. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
GSM359201(GSM359201)
hepg2_tap_pasr_b. (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)
GSM359207(GSM359207)
HepG2_tot_up. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR191494(GSM715604)
157genomic small RNA (size selected RNA from . (breast)
SRR191442(GSM715552)
107genomic small RNA (size selected RNA from . (breast)
GSM359193(GSM359193)
HepG2_3pM_7. (cell line)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191511(GSM715621)
161genomic small RNA (size selected RNA from . (breast)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
TAX577579(Rovira)
total RNA. (breast)
SRR191609(GSM715719)
194genomic small RNA (size selected RNA from . (breast)
SRR191423(GSM715533)
137genomic small RNA (size selected RNA from . (breast)
SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR191533(GSM715643)
136genomic small RNA (size selected RNA from . (breast)
GSM359212(GSM359212)
hepg2_biotin_hl_2b. (cell line)
SRR038856(GSM458539)
D11. (cell line)
GSM359203(GSM359203)
hepg2_untreated_b. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR343337
.............................................................................................................................................................................................TGTTTCCACAGTCTCTCTG.......................................... 192.000.00----------------------------------------------------------------------------------------------2.00--------------------------------------------------------------------------------------
...................................................................................................................................................................................CTTGAATTTCTGTTTCCTTC................................................... 201.000.00-----------------------------------------------------------------------------------------------------------------------------------------------------1.00-------------------------------
...............................................................................................ATTTTAAAGAATTATTCTG........................................................................................................................................ 191.000.00-------------------------------------------------------------------------------------------------------------------------------1.00-----------------------------------------------------