ID: uc002ryb.3_intron_32_0_chr2_55186399_f.5p
GENE: (33)
chr2:55186349-55186598+


(1)
AGO2.ip 		(3)
B-CELL 		(3)
BRAIN 		(2)
BREAST 		(10)
CELL-LINE 		(1)
CERVIX 		(1)
HELA 		(1)
LIVER 		(2)
OTHER 		(3)
SKIN 		(1)
TESTES 		(2)
XRN.ip

Sense strand
TACACAACCCTTCGGGATGGACTCATAGTGACCGGCGGAAAAGAGAGGCCGTAAGCCAAAGCTCCTATGGAAACAACTTGTCGTTTGTTGTTATCTTGGGAGAAACTGACAAAAGTGTTCCCAACTTGGAGAAAATGCAGACTGTCATCCTCCTATCTTTTTTGCATTAGGAAGATCAGTCTGCTCTCTCTCCAAGAGGGCCCTAAGTCAAGATCCTCACAAGGAAGAGAGGAGTGCAGAGGTGGTTTGA
................................................................................................................................((((....((((((((..(((.(((((............))))).)))))))))))))))..............................................................
...............................................................................................................................128.........................................................188............................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189786SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR189787SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189783SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR189784SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR029129(GSM416758)
SW480. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343335SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
....................................................................................................................................AAATGCAGACTGTCATCCTCCTAT..............................................................................................24115.0015.0013.002.00-------------------------------
....................................................................................................................................AAATGCAGACTGTCATCCTCCT................................................................................................22113.0013.009.00--3.001.00----------------------------
....................................................................................................................................AAATGCAGACTGTCATCCTCCTA...............................................................................................23110.0010.006.00--1.00-----2.00------------1.00----------
....................................................................................................................................AAATGCAGACTGTCATCCTCCTAC..............................................................................................2416.0010.00-4.00--1.00----------1.00-----------------
....................................................................................................................................AAATGCAGACTGTCATCCTCCTAA..............................................................................................2416.0010.004.00-2.00------------------------------
...................................................................................................................................AAAATGCAGACTGTCATCCTCC.................................................................................................2215.005.00--4.00---------------------1.00--------
.........................................................................................................................................................................................................................CACAAGGAAGAGAGGTAGC..............194.000.00-----1.00-------2.00---------------1.00---
.....................................................................................................................................AATGCAGACTGTCATCCTCCTATCT............................................................................................2514.004.001.00------2.00------1.00------------------
....................................................................................................................................AAATGCAGACTGTCATCCTCCTATT.............................................................................................2513.0015.002.00--1.00-----------------------------
....................................................................................................................................AAATGCAGACTGTCATCCTCTTAT..............................................................................................2413.002.003.00--------------------------------
...................................................................................................................................AAAATGCAGACTGTCATCCTCCT................................................................................................2313.003.003.00--------------------------------
....................................................................................................................................AAATGCAGACTGTCATCCTC..................................................................................................2012.002.001.00------------------1.00-------------
...................................................................................................................................AAAATGCAGACTGTCATCCTCCTA...............................................................................................2412.002.00----------2.00----------------------
....................................................................................................................................AAATGCAGACTGTCATCCTCCTATTAT...........................................................................................2712.0015.002.00--------------------------------
..............GGATGGACTCATAGTGACCGGCG.....................................................................................................................................................................................................................2312.002.00--------1.00------------------1.00-----
...................................................................................................................................AAAATGCAGACTGTCATCCTCCCA...............................................................................................2412.005.00-2.00-------------------------------
....................................................................................................................................AAATGCAGACTGTCATCCTCCTATAT............................................................................................2612.0015.002.00--------------------------------
.......................CATAGTGACCGGCGGAAATTA..............................................................................................................................................................................................................211.000.00--------------------1.00------------
....................................................................................................................................AAATGCAGACTGTCATCCTCTTTT..............................................................................................2411.002.001.00--------------------------------
....................................................................................................................................AAATGCAGACTGTCATCCTCCTAGA.............................................................................................2511.0010.00--------------------------1.00------
.................TGGACTCATAGTGACCGGCG.....................................................................................................................................................................................................................2011.001.00------1.00--------------------------
....................................................................................................................................AAATGCAGACTGTCATCCTCCTAAG.............................................................................................2511.0010.001.00--------------------------------
....................................................................................................................................AAATGCAGACTGTCATCCTCCTATTT............................................................................................2611.0015.001.00--------------------------------
......................TCATAGTGACCGGCGGAAAAGAGCGGC.........................................................................................................................................................................................................271.000.00-----------------------1.00---------
....................................................................................................................................AAATGCAGACTGTCATCCTCTTA...............................................................................................2311.002.001.00--------------------------------
.....................................................................................................................................AATGCAGACTGTCATCCTCCTATCTA...........................................................................................2611.004.001.00--------------------------------
....................................................................................................................................AAATGCAGACTGTCATCCTCCTATTTT...........................................................................................2711.0015.001.00--------------------------------
....................................................................................................................................AAATGCAGACTGTCATCCTCCTATCT............................................................................................2611.001.00-1.00-------------------------------
....................................................................................................................................AAATGCAGACTGTCATCCTCCTAAT.............................................................................................2511.0010.001.00--------------------------------
.....AACCCTTCGGGATGGACTCATAGTGACCGGCGG....................................................................................................................................................................................................................3311.001.00-------------------------------1.00-
....................................................................................................................................AAATGCAGACTGTCATCCCCCT................................................................................................221.000.00----1.00----------------------------
....................................................................................................................................AAATGCAGACTGTCATCCTCCCAT..............................................................................................2411.001.001.00--------------------------------
....................................................................................................................................AAATGCAGACTGTCATCCCCC.................................................................................................211.000.001.00--------------------------------
........................................................................................................................................................................................................................TCACAAGGAAGAGAGGTAG...............191.000.00-----------1.00---------------------
.................TGGACTCATAGTGACCGGCGGAAAAGAGCG...........................................................................................................................................................................................................301.000.00------1.00--------------------------
....................................................................................................................................AAATGCAGACTGTCATCCTCCCA...............................................................................................2311.001.00----1.00----------------------------
.........................................................................................................................................CAGACTGTCATCCTCATA...............................................................................................181.000.00------------1.00--------------------
........................................................................................................................................................................................................................TCACAAGGAAGAGAGGTAGC..............201.000.00-----------1.00---------------------
....................................................................................................................................AAATGCAGACTGTCATCCTCCC................................................................................................2211.001.001.00--------------------------------
.....................................................................................................................................................................ATTAGGAAGATCAGTAGAT..................................................................191.000.00--------1.00------------------------
........................................................................................................................................................................................................................TCACAAGGAAGAGAGGTAT...............191.000.00----------------------------1.00----
....................................................................................................................................AAATGCAGACTGTCATAC....................................................................................................181.000.001.00--------------------------------
....................................................................................................................................AAATGCAGACTGTCATCCTCC.................................................................................................2111.001.001.00--------------------------------
....................................................................................................................................AAATGCAGACTGTCATCCTCCTACAT............................................................................................2611.0010.001.00--------------------------------
.........................TAGTGACCGGCGGAAAAGAGCGG..........................................................................................................................................................................................................231.000.00-----------------1.00---------------

Antisense strand
TACACAACCCTTCGGGATGGACTCATAGTGACCGGCGGAAAAGAGAGGCCGTAAGCCAAAGCTCCTATGGAAACAACTTGTCGTTTGTTGTTATCTTGGGAGAAACTGACAAAAGTGTTCCCAACTTGGAGAAAATGCAGACTGTCATCCTCCTATCTTTTTTGCATTAGGAAGATCAGTCTGCTCTCTCTCCAAGAGGGCCCTAAGTCAAGATCCTCACAAGGAAGAGAGGAGTGCAGAGGTGGTTTGA
................................................................................................................................((((....((((((((..(((.(((((............))))).)))))))))))))))..............................................................
...............................................................................................................................128.........................................................188............................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189786SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR189787SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189783SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR189784SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR029129(GSM416758)
SW480. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343335SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
............................................................................................................................................................................TTGGAGAGAGAGCAGACTGATCT....................................................... 2311.001.00------------------1.00--------------
............................................................................................................................................................................................................................AAGGAAGAGAGGAGTAAG............ 181.000.00--------------------------------1.00
..............................................................................................................................................................................................................GTCAAGATCCTCACAAC........................... 171.000.00-----1.00---------------------------
...................................................................................................................................................................................................................................AGAGGAGTGCAGAGGTGGGC... 201.000.00---------------------1.00-----------
.....................................................................................................................................AGGATGACAGTCTGCATT................................................................................................... 1811.001.00----------------1.00----------------
..................................................................ATGGAAACAACTTGTCTG...................................................................................................................................................................... 181.000.001.00--------------------------------
......................................................................................................................................................................................................................................AACCACCTCTGCACTCC... 1711.001.00-------------------------1.00-------
...........................................AGAGGCCGTAAGCCAAT.............................................................................................................................................................................................. 171.000.00------------------------------1.00--
.............................................................................................................................................................................AGAGAGAGCAGACTGATC........................................................... 1811.001.00------------1.00--------------------