ID: uc002rvc.2_intron_1_0_chr2_46815319_r.3p
GENE: (5)
chr2:46815269-46815518-


(1)
AGO2.ip 		(3)
B-CELL 		(1)
BRAIN 		(2)
BREAST 		(8)
CELL-LINE 		(1)
CERVIX 		(3)
LIVER 		(7)
OTHER 		(10)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
ATGCAAATTCCATGATTTATTTGAGTTCTCATATATTAGAGAATATGTTAATTGTCTCAGTTTGTTGTTTTATTTTTTCTGCCCAGCAGTCTTTCAGTTGGTAGAGTGGACTGTTAATTTATCTATTTCTCTGGTATTTAGTTATGCCAATTTAGGGTATTTGGATTTCACATAATTTTCAATCCTGTCTGACATTTCAGATGACAGTAGAAAGAAAACGTAGCACTTATAGATCTCTCCATGTACCCTG
.........................................................................................(((.((....)).))).((((.(((((...............((((((......))))))...((((((....(((((......)))))...))))))..))))).))))...................................................
.........................................................................................90............................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR343336SRR343337SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR343335SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
..............................................................................................CAGTTGGTAGAGTGGCA...........................................................................................................................................1722.000.0010.007.00---3.001.00----------------1.00------------
..............................................................................................CAGTTGGTAGAGTGGCAG..........................................................................................................................................188.000.001.00-6.00---1.00-----------------------------
.............................................................................................TCAGTTGGTAGAGTGGCA...........................................................................................................................................187.000.001.005.00----1.00-----------------------------
..............................................................................................CAGTTGGTAGAGTGGC............................................................................................................................................165.000.002.002.00---1.00------------------------------
................................................................TTGTTTTATTTTTTCTGCCCAGCAGTCTTCC...........................................................................................................................................................313.000.00---3.00--------------------------------
..........................................................................................................................................................................................................GACAGTAGAAAGAAAACGTAGCA.........................2313.003.00-------3.00----------------------------
.......................................................................................................GAGTGGACTGTTAATTTATC...............................................................................................................................2012.002.00--------2.00---------------------------
...................................................................TTTTATTTTTTCTGCCCAGCAGTCTTTC...........................................................................................................................................................2812.002.00---2.00--------------------------------
.....................................................................................................TAGAGTGGACTGTTAATTTATC...............................................................................................................................2212.002.00-----------2.00------------------------
......................................................................................................AGAGTGGACTGTTAATTCTG................................................................................................................................202.000.00---------2.00--------------------------
.............................................................................................TCAGTTGGTAGAGTGGC............................................................................................................................................172.000.002.00-----------------------------------
........................................................TCAGTTTGTTGTTTTATTTTTTCTGCCCAGC...................................................................................................................................................................3112.002.00----2.00-------------------------------
..................................................................................................................................................................................TCAATCCTGTCTGACAGCAC....................................................201.000.00-------------------1.00----------------
.................................................................................................................................................................................................ATTTCAGATGACAGTAGAAAGAAA.................................2411.001.00-----------------------------1.00------
.............................................................................................................................................................................AATTTTCAATCCTGTCTGACATTT.....................................................2411.001.00-------------1.00----------------------
.......................................................................................................GAGTGGACTGTTAATTTATCTATTT..........................................................................................................................2511.001.00---------------1.00--------------------
.............................................................................................TCAGTTGGTAGAGTGGCAT..........................................................................................................................................191.000.001.00-----------------------------------
..................................................ATTGTCTCAGTTTGTTGTTTTATTTCTTC...........................................................................................................................................................................291.000.00----1.00-------------------------------
..............................................................................................CAGTTGGTAGAGTGGCT...........................................................................................................................................171.000.00------1.00-----------------------------
......................................................................................................................................................................................................AGATGACAGTAGAAAGAAAACAA.............................231.000.00---------------------1.00--------------
...........................................................................................................................................................................................................ACAGTAGAAAGAAAACGTAGCAC........................2311.001.00---------------------------1.00--------
........................................................TCAGTTTGTTGTTTTATTTTTTCCGCC.......................................................................................................................................................................271.000.00----1.00-------------------------------
..........................................................................................................................................................................................................GACAGTAGAAAGAAAACGTAGCACT.......................2511.001.00----------------------1.00-------------
..........................................................AGTTTGTTGTTTTATTTCAC............................................................................................................................................................................201.000.00----1.00-------------------------------
............................................................................................................................................................................................................CAGTAGAAAGAAAACGTA............................1811.001.00------------------------1.00-----------
..........................................................................................................TGGACTGTTAATTTATCTATTTCTCTAG....................................................................................................................281.000.00------------------------------1.00-----
.....................................................................................................................................................ATTTAGGGTATTTGGATTT..................................................................................1911.001.00--------------------------1.00---------
.....................................................................................................................................................................................................CAGATGACAGTAGAAAGAA..................................1911.001.00-------------1.00----------------------
......................................................................................CAGTCTTTCAGTTGGTAGA.................................................................................................................................................1911.001.00--------------------1.00---------------
.............................................................................................................ACTGTTAATTTATCTATTCCTC.......................................................................................................................221.000.00--------------1.00---------------------
....................................................................................................................................................................................................TCAGATGACAGTAGAAAGAAAACGTAGCA.........................2911.001.00-------------------------------1.00----
.........................................................................................................................................................................ACATAATTTTCAATCATTC..............................................................191.000.00--------------1.00---------------------
....................................................................................................GTAGAGTGGACTGTTAATTTT.................................................................................................................................211.000.00-------------------------1.00----------
.......................................................................................................................................................................................................GATGACAGTAGAAAGAAAACGTAGCA.........................2611.001.00------------1.00-----------------------
..............................................................................................CAGTTGGTAGAGTGGTGGA.........................................................................................................................................191.000.00-----------------1.00------------------
............................................................................................TTCAGTTGGTAGAGTACT............................................................................................................................................181.000.00------------------1.00-----------------
.................................................................................CCCAGCAGTCTTTCAGTTGGTAGAGTGGAC...........................................................................................................................................3011.001.00---1.00--------------------------------
......................................................TCTCAGTTTGTTGTTTTATT................................................................................................................................................................................2011.001.00----1.00-------------------------------
..................................................................................................................................................................................................TTTCAGATGACAGTAGTACA....................................201.000.00----------1.00-------------------------
.............................................................................................TCAGTTGGTAGAGTGGACTCTTA......................................................................................................................................231.000.00----------------------------1.00-------
........................................................................................................................................................TAGGGTATTTGGATTTATAT..............................................................................201.000.00-------1.00----------------------------
......................................................................................................................................................................................................AGATGACAGTAGAAAGAAAACGTAGC..........................2611.001.00------------1.00-----------------------
.......................................................................................................................................................................................................GATGACAGTAGAAAGA...................................1640.250.25-----------------------------------0.25

Antisense strand
ATGCAAATTCCATGATTTATTTGAGTTCTCATATATTAGAGAATATGTTAATTGTCTCAGTTTGTTGTTTTATTTTTTCTGCCCAGCAGTCTTTCAGTTGGTAGAGTGGACTGTTAATTTATCTATTTCTCTGGTATTTAGTTATGCCAATTTAGGGTATTTGGATTTCACATAATTTTCAATCCTGTCTGACATTTCAGATGACAGTAGAAAGAAAACGTAGCACTTATAGATCTCTCCATGTACCCTG
.........................................................................................(((.((....)).))).((((.(((((...............((((((......))))))...((((((....(((((......)))))...))))))..))))).))))...................................................
.........................................................................................90............................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR343336SRR343337SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR343335SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
.......TGAGAACTCAAATAAATCATGGAA........................................................................................................................................................................................................................... 2411.001.00--------------------------------1.00---
.............................................................................................................ACTGTTAATTTATCTAACGG......................................................................................................................... 201.000.00----------1.00-------------------------
............................................................................................................................................................................................................................GAGAGATCTATAAGTGCTA........... 1911.001.00----------------------------------1.00-
....................................................................................................................................................................................................TCAGATGACAGTAGAATC.................................... 181.000.00---------------------------------1.00--
................TTATTTGAGTTCTCATATA....................................................................................................................................................................................................................... 191.000.00----------------1.00-------------------