ID: uc002rte.3_intron_7_0_chr2_43927748_f.3p
GENE: PLEKHH2(8)
chr2:43930920-43931169+


(5)
BREAST 		(9)
CELL-LINE 		(1)
HEART 		(1)
OTHER 		(3)
SKIN

Sense strand
AGATGGAGAAAAATCTCAACAGTACTATTCACAATGGCATATTTTAGTTGGCACCGATGATGGTTTTATAATAATGCTGTACTCTAGTGAATCTTAAATGAAGAACAAATGAAAAACATGTGTATTGAAAGTAGTCTTTTTTTTTTTTTTTTTTTTTTTTTGCTTTAAATACCCTGTTCAAACTCTCTCTTTTACCCTAGGAAAGCAGAATTTATGCTGTAGCCAAATCAGGTATTCGAATGTCTGAGGC
...................................................................................................((((((.(((.((((((..........(((((....))))))))))).))).)))))).............................................................................................
..........................................................................................91.................................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR189784SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189782SRR029128(GSM416757)
H520. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577588(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		TAX577741(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343337SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTCCC......................................................................................3239.000.0037.002.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTCCCC........................................................................................3024.000.0021.003.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCCCC.........................................................................................2924.000.0021.003.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTCGAG...........................................................................................2716.000.0011.005.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCGAG.........................................................................................2912.000.008.004.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTCCCC.....................................................................................3311.000.0011.00---------------------
...............................................................................................AAATGAAGAACAAATGACT........................................................................................................................................199.000.00---6.003.00-----------------
................................................................................................AATGAAGAACAAATGACT........................................................................................................................................188.000.00---1.00-4.00---3.00------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCCCT..........................................................................................287.000.006.001.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTCGAG........................................................................................306.000.005.001.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCTCC..........................................................................................285.000.005.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTAC................................................................................................255.000.004.001.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCGGG..........................................................................................285.000.003.002.00--------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTTTTTTTAC..........................................................................................315.000.004.001.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTCGAG......................................................................................325.000.002.003.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTAGG........................................................................................304.000.004.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCTCC.........................................................................................294.000.003.001.00--------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTAC...................................................................................................224.000.004.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTCGG............................................................................................264.000.004.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCTC...........................................................................................274.000.004.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTTTTAC.............................................................................................284.000.003.001.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTGACC.......................................................................................313.000.003.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTAC....................................................................................................213.000.001.002.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTACC......................................................................................323.000.003.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTCCCT.....................................................................................333.000.002.001.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCAGC.........................................................................................293.000.003.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTTCAGC.........................................................................................303.000.003.00---------------------
................................................................TTTATAATAATGCTGCTTG.......................................................................................................................................................................193.000.00------1.00-1.00---------1.00---
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTAC.................................................................................................243.000.003.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTGGG......................................................................................323.000.003.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTCAAG...................................................................................................223.000.003.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTTTTTTTTAC.........................................................................................323.000.002.001.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTCTT.......................................................................................313.000.002.001.00--------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTTAC...............................................................................................263.000.001.002.00--------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTTTCT..........................................................................................293.000.003.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTCTGG...........................................................................................273.000.003.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCTAG.........................................................................................293.000.003.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTAGCC.....................................................................................332.000.002.00---------------------
..............................................................................................................................................TTTTTTTTTTTTTTTTTTTGCTTTCATC................................................................................282.000.002.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTCTC.........................................................................................292.000.002.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTGGGT...........................................................................................282.000.001.001.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTCGGT...........................................................................................272.000.002.00---------------------
...............................................................................................AAATGAAGAACAAATGACTTT......................................................................................................................................212.000.00---1.00-1.00----------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTTCC...........................................................................................282.000.002.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCTGC..........................................................................................282.000.001.001.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTGTT........................................................................................302.000.002.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTCGAG............................................................................................272.000.002.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTCTC......................................................................................322.000.002.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCGA..........................................................................................282.000.002.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCCG...........................................................................................272.000.002.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTCGG.........................................................................................292.000.002.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTAGTC.....................................................................................332.000.002.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTTTTTTTTTTA........................................................................................332.000.00-2.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTCCTC......................................................................................322.000.002.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCTAC..........................................................................................282.000.002.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTTTTTTAC...........................................................................................302.000.002.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTGGGG.....................................................................................332.000.002.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTCCTT...........................................................................................272.000.002.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTAGC......................................................................................322.000.002.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTAC.............................................................................................262.000.001.001.00--------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTCTTG...........................................................................................282.000.00-2.00--------------------
......................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTGCTCC....................................................................................322.000.002.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTTCTT..........................................................................................292.000.00-2.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTCTAC........................................................................................302.000.001.001.00--------------------
.................................................................................................ATGAAGAACAAATGACTTT......................................................................................................................................192.000.00----2.00-----------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCGG...........................................................................................272.000.002.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTTTTTTTTACT........................................................................................332.000.002.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTCG........................................................................................302.000.002.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTAGTC.......................................................................................312.000.002.00---------------------
.............................................................................................................................................TTTTTTTTTTTTTTTTTTTTGCTTTCCAG................................................................................292.000.001.00-1.00-------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTAAC................................................................................................252.000.002.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTCTAC...........................................................................................271.000.001.00---------------------
......................................................................................................................................................................................................................TGCTGTAGCCAAATCAGGTAT...............2111.001.00-----------1.00----------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTCTAG........................................................................................301.000.00-1.00--------------------
...........................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTGCTTTAGGG................................................................................311.000.00--1.00-------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTCTTT........................................................................................301.000.00-1.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTATCC.....................................................................................331.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTTTTGTAG.......................................................................................321.000.00--1.00-------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTTTAAGC........................................................................................311.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTTTCAGG........................................................................................311.000.001.00---------------------
..............................................................................................................................................TTTTTTTTTTTTTTTTTTTGCTTTACG.................................................................................271.000.001.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTTTTTGAG...........................................................................................301.000.00-1.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTCTC.......................................................................................311.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTAACC.....................................................................................331.000.001.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTTTTCTAC...........................................................................................301.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTAATC.......................................................................................311.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTCTTG..........................................................................................291.000.00-1.00--------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTCTTT..........................................................................................291.000.00-1.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTAAAG.....................................................................................331.000.001.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTTTTTGC............................................................................................291.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTCTTC........................................................................................301.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCGGA..........................................................................................281.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTCGAG..........................................................................................291.000.00-1.00--------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTTTTC..............................................................................................271.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCTTA.........................................................................................291.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTCGAG...........................................................................................281.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTTTATT.........................................................................................301.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTAATG..............................................................................................251.000.00--1.00-------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTTTTTTCACT.........................................................................................321.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTCACA.....................................................................................331.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCCGG..........................................................................................281.000.001.00---------------------
...........................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTGCTTTCCCC................................................................................311.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCTGG..........................................................................................281.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTTCCCT.........................................................................................301.000.00-1.00--------------------
...................................................................................................................................................TTTTTTTTTTTTTTGCTTTACCG................................................................................231.000.001.00---------------------
...............................................................TTTTATAATAATGCTGCTTG.......................................................................................................................................................................201.000.00--------1.00-------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTTTTTTTC...........................................................................................301.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTAAGC........................................................................................301.000.001.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTGGTT..............................................................................................271.000.00-1.00--------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTCTAC..........................................................................................291.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCTGT..........................................................................................281.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTTGGGG.........................................................................................301.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCAGG..........................................................................................281.000.00-1.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCTC..........................................................................................281.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTCTCC......................................................................................321.000.001.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTCC................................................................................................251.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTCGCC..............................................................................................251.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTCCTC.....................................................................................331.000.001.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTCTAC.................................................................................................241.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTCGCC........................................................................................301.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTGGG..............................................................................................251.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTATTT........................................................................................301.000.001.00---------------------
..............................................................................................................................................TTTTTTTTTTTTTTTTTTTGCTTTACTC................................................................................281.000.00-1.00--------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTTTAT..........................................................................................291.000.001.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTTTTATC............................................................................................291.000.001.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTCC.................................................................................................241.000.001.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTTTTTAG............................................................................................291.000.00-1.00--------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTTCGGG.........................................................................................301.000.001.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTCTAC....................................................................................................211.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTCAC...........................................................................................281.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTGGGC.....................................................................................331.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCTCG.........................................................................................291.000.00-------1.00--------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTAGCG.....................................................................................331.000.001.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTGGC...............................................................................................261.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTTTTTCC........................................................................................311.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTCAGG........................................................................................301.000.001.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTCGAG...................................................................................................221.000.00-1.00--------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTTTTTTGGG......................................................................................331.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTAAAT.....................................................................................331.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTAAAC........................................................................................301.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTCGGC...........................................................................................271.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCCCT.........................................................................................291.000.001.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTTTCAC.............................................................................................281.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTACAG.......................................................................................311.000.001.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTGG.......................................................................................................181.000.001.00---------------------
..................................................................................................................................GTAGTCTTTTTTTTTTTTTAC...................................................................................................211.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTAAC........................................................................................301.000.001.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTCTCC..............................................................................................271.000.001.00---------------------
..................................................................................................................................GTAGTCTTTTTTTTTTTTTTTTTTTTTTCGGT........................................................................................321.000.00-------1.00--------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTCTT...........................................................................................281.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTTCTTT.........................................................................................301.000.00-1.00--------------------
...........................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTGCTTTAAATG...............................................................................321.000.00--1.00-------------------
..............................................................................................................................................TTTTTTTTTTTTTTTTTTTGCTTTCCAG................................................................................281.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTTTTTTCAG......................................................................................331.000.001.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTTCGG..............................................................................................271.000.001.00---------------------
................................................................TTTATAATAATGCTGCTCG.......................................................................................................................................................................191.000.00------1.00---------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTAC............................................................................................271.000.001.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTTTTTAC............................................................................................291.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTAGCC........................................................................................301.000.001.00---------------------
................................................................................................................................AAGTAGTCTTTTTTTTTTTTAGAG..................................................................................................241.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCCGC.........................................................................................291.000.00-1.00--------------------
...........................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTGCTTTCCAG................................................................................311.000.001.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTGATT.................................................................................................241.000.00-1.00--------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTCTAC...............................................................................................261.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTAAGG........................................................................................301.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTCTT.........................................................................................291.000.001.00---------------------
..........................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTGCTTTAGGG................................................................................321.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTGTTA.......................................................................................311.000.001.00---------------------
................................................................................................................................AAGTAGTCTTTTTTTTTTTTTTTA..................................................................................................241.000.00-1.00--------------------
..............................................................................................................................GAAAGTAGTCTTTTTTGG..........................................................................................................181.000.00--------1.00-------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTTTTTACT...........................................................................................301.000.001.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTTTTTTCTAC.........................................................................................321.000.00-1.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTAATT.....................................................................................331.000.00-------1.00--------------
.............................................................................................................................................TTTTTTTTTTTTTTTTTTTTGCTTTCGGC................................................................................291.000.00------1.00---------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTGGTC.....................................................................................331.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTCGAG..............................................................................................251.000.001.00---------------------
...............................................................................................................................................TTTTTTTTTTTTTTTTTTGCTTTAAATCAC.............................................................................301.000.00--1.00-------------------
.........................................................................................................................................................................................................................................ATTCGAATGTCTGAGGC1711.001.00----------1.00-----------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTTTTTAAC...........................................................................................301.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTCCG............................................................................................261.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTTTTTGTTT......................................................................................331.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTGGG................................................................................................231.000.00-1.00--------------------
................................................................................................................................AAGTAGTCTTTTTTTTTTTTTTTTTGGC..............................................................................................281.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTATG...........................................................................................281.000.00-----------------1.00----
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTCAGC...........................................................................................271.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTCAGC..............................................................................................251.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTATCC.......................................................................................311.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTTTTTCCC.......................................................................................321.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCTCT..........................................................................................281.000.00-1.00--------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTTTTTTATT......................................................................................331.000.001.00---------------------
............................................................................................................................................TTTTTTTTTTTTTTTTTTTTTGCTTTAAAGG...............................................................................311.000.00--1.00-------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTTTC...............................................................................................261.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTTTCTG.........................................................................................301.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCTTC..........................................................................................281.000.00-1.00--------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTCTG................................................................................................251.000.00-1.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTCCG.......................................................................................311.000.001.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTACT................................................................................................251.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTCCAC..........................................................................................291.000.001.00---------------------
.................................................................................................................................................................................................................ATTTATGCTGTAGCCAAATCAGGTAT...............2611.001.00------------1.00---------
.................................................................................................................................AGTAGTCTTTTTTTTTTCTTG....................................................................................................211.000.00-1.00--------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTAGC..............................................................................................251.000.001.00---------------------
............................................................................................................................................TTTTTTTTTTTTTTTTTTTTTGCTTTCAGC................................................................................301.000.00--1.00-------------------
.....................................................................................................................................GTCTTTTTTTTTTTTTTTTTTTCGC............................................................................................251.000.001.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTCGAG.....................................................................................................201.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTAACC.......................................................................................311.000.00-1.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCAC...........................................................................................271.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTCAAC.....................................................................................331.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTCAC.........................................................................................291.000.001.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTGG....................................................................................................211.000.001.00---------------------
................................................................................................................................AAGTAGTCTTTTTTTTTTTTTTTTTGTG..............................................................................................281.000.00-1.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTAGGG........................................................................................301.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTATTG........................................................................................301.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTACC............................................................................................271.000.001.00---------------------
................................................................................................................................AAGTAGTCTTTTTTTTTTTTTTGTG.................................................................................................251.000.00-1.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTGTTT.......................................................................................311.000.001.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTTTTTGG............................................................................................291.000.001.00---------------------
..........................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTGCTTTCCCC................................................................................321.000.001.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTTTTTTGC...........................................................................................301.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCCCG.........................................................................................291.000.001.00---------------------
......................................................................................................................................................................................................................................GGTATTCGAATGTCTGAGGC2011.001.00-------------1.00--------
................................................................................................................................................TTTTTTTTTTTTTTTTTGCTTTAACTG...............................................................................271.000.001.00---------------------
.......................................................................................................................................CTTTTTTTTTTTTTTTTTTTTTTTTTGCTTCCG..................................................................................331.000.00--1.00-------------------
....................................................................................................................................................TTTTTTTTTTTTTGCTTTAACTG...............................................................................231.000.00-------------------1.00--
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTGCGT.......................................................................................311.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTGCC.............................................................................................261.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTGGGC.......................................................................................311.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTTCGGC.........................................................................................301.000.001.00---------------------
...........................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTGCTTTACCCC...............................................................................321.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTCGG......................................................................................321.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTACTG........................................................................................301.000.00-1.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCTTG.........................................................................................291.000.00-1.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCCGC..........................................................................................281.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTTTACC.........................................................................................301.000.001.00---------------------
....................................................................................................................................................TTTTTTTTTTTTTGCTTTAAAGTCC.............................................................................251.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCGT...........................................................................................271.000.001.00---------------------
..............................................................................................................................................TTTTTTTTTTTTTTTTTTTGCTTTAGAG................................................................................281.000.00-1.00--------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTCG..........................................................................................281.000.001.00---------------------
............................................................................................................................................TTTTTTTTTTTTTTTTTTTTTGCTTTAGCCC...............................................................................311.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTCAG............................................................................................271.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCGTT.........................................................................................291.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTCCTG.....................................................................................331.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTACAT.......................................................................................311.000.001.00---------------------
.......................................................................................................................................CTTTTTTTTTTTTTTTTTTTTTTTTTGCTTAGCT.................................................................................341.000.00----------------1.00-----
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTTTCTTT........................................................................................311.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTATC.........................................................................................291.000.001.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTTTTCGAG...........................................................................................301.000.001.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTTTTTTTTTCC........................................................................................331.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTTTTAAC........................................................................................311.000.001.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTTTTTTCC...........................................................................................301.000.00-1.00--------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTTTCACT........................................................................................311.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTATC......................................................................................321.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCAC..........................................................................................281.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTCGGG.........................................................................................291.000.001.00---------------------
.................................................................................................................................AGTAGTCTTTTTTTTTTTTTTTTTTTTTCGG..........................................................................................311.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTAGAG........................................................................................301.000.001.00---------------------
..............................................................................................................................................TTTTTTTTTTTTTTTTTTTGCTTTCCCG................................................................................281.000.001.00---------------------
................................................................................................................................................TTTTTTTTTTTTTTTTTGCTTTACGTT...............................................................................271.000.00--1.00-------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTCTCC.....................................................................................331.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTCTCT...........................................................................................281.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCGGT..........................................................................................281.000.001.00---------------------
........................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTGCTTCCCC.................................................................................331.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTCGGC..........................................................................................281.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTGGC......................................................................................321.000.001.00---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTATTT.....................................................................................331.000.001.00---------------------
...................................................................................................................................................................................................................TTATGCTGTAGCCAAATCAGGTAT...............2411.001.00--------------1.00-------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTGGTT.....................................................................................331.000.001.00---------------------
..........................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTGCTTTACAC................................................................................321.000.00-1.00--------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTTCGAG.........................................................................................301.000.001.00---------------------
...................................................................................................................................TAGTCTTTTTTTTTTTTTTTTTTTTTCGAC.........................................................................................301.000.001.00---------------------
...............................................................................................................................................................................................................GAATTTATGCTGTAGC...........................1620.500.50--------------------0.50-
......................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTGCTTT....................................................................................3280.500.500.50---------------------
.................................................................................................................................................................................................................ATTTATGCTGTAGCCAA........................1730.330.33---------------------0.33
...........................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTGCTTTAAA.................................................................................3070.140.140.14---------------------
....................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTTTTTTTGC.......................................................................................3190.110.110.11---------------------

Antisense strand
AGATGGAGAAAAATCTCAACAGTACTATTCACAATGGCATATTTTAGTTGGCACCGATGATGGTTTTATAATAATGCTGTACTCTAGTGAATCTTAAATGAAGAACAAATGAAAAACATGTGTATTGAAAGTAGTCTTTTTTTTTTTTTTTTTTTTTTTTTGCTTTAAATACCCTGTTCAAACTCTCTCTTTTACCCTAGGAAAGCAGAATTTATGCTGTAGCCAAATCAGGTATTCGAATGTCTGAGGC
...................................................................................................((((((.(((.((((((..........(((((....))))))))))).))).)))))).............................................................................................
..........................................................................................91.................................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR189784SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189782SRR029128(GSM416757)
H520. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577588(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		TAX577741(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343337SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
.............................................................................................................................................................................................................CAGAATTTATGCTGTAAC........................... 181.000.00---------------1.00------