ID: uc002rsi.2_intron_17_0_chr2_42543191_f.3p
GENE: (18)
chr2:42544367-42544616+


(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(10)
B-CELL 		(5)
BRAIN 		(9)
BREAST 		(25)
CELL-LINE 		(2)
FIBROBLAST 		(3)
LIVER 		(1)
OTHER 		(16)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GTAAGCATCTCCAAGAAGGGATTGTGTATTAGACTGGATGACCATTTATTTTTCAAATGTACTTAGTGGATAGGATTCATTCATTAATTGCCAAATAGTTAAATTGATGAGATTTAACAGCATTTGTAAAATCAGTAAAATAACAGTAAATAAATTTATCAGTATATTTCTCTAGTCAACACTGACCTATTTTATTCTAGATGGTACCTTCCTGGCTGTAGGATCTCATGACAACTTTATTTACCTCTAT
..........................................................(((.(((((((((.......))))))))).))).((((((....(((((((((((((.((((...)))).))))).((......))...........))))))))...........((((....))))))))))..........................................................
..........................................................59...........................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		TAX577743(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037937(GSM510475)
293cand2. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		TAX577740(Rovira)
total RNA. (breast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR038854(GSM458537)
MM653. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577580(Rovira)
total RNA. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577588(Rovira)
total RNA. (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335SRR038857(GSM458540)
D20. (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR038858(GSM458541)
MEL202. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
...............................................................TAGTGGATAGGATTCGGCG........................................................................................................................................................................19224.000.502.00---2.00--0.502.000.50-----2.00-1.500.50-1.500.50---1.00--------1.00--1.00---0.50-------0.500.500.500.50-0.50-0.500.50-0.500.50-0.50-0.50-0.50-0.50--0.500.50--
...............................................................TAGTGGATAGGATTCGGC.........................................................................................................................................................................1826.500.500.50--0.500.50---0.50----0.50----1.00----------------------------------0.50----0.50--0.50---0.50-0.50-0.50-----
................................................................AGTGGATAGGATTCAGCGC.......................................................................................................................................................................195.000.00-2.00-----2.00--------------1.00----------------------------------------------------
......................................................................................................................................................................................................................................ACAACTTTATTTACCTCCATG213.000.00-----------2.00----------------------------1.00----------------------------------
................................................................AGTGGATAGGATTCAGCG........................................................................................................................................................................183.000.00-------------------1.00-1.00--1.00--------------------------------------------------
......................................................................................................................................................................................................................................ACAACTTTATTTACCTCTAT2013.003.00-----3.00---------------------------------------------------------------------
...............................................................TAGTGGATAGGATTCGG..........................................................................................................................................................................1722.000.50----------------------0.50--------------------1.00----0.50--------------------------
........................................................................................................................................................................................................ATGGTACCTTCCTGGCTGTAG.............................2112.002.00---------------------------1.00----1.00------------------------------------------
.......................................................................................................................................................................................................GATGGTACCTTCCTGGCTGTAGG............................2312.002.00---1.00------1.00----------------------------------------------------------------
.....................................................................................................................................................................................................TAGATGGTACCTTCCTGGCT.................................2012.002.00--2.00------------------------------------------------------------------------
.................................................................................................................................................................................AACACTGACCTATTTTATTCTAGA.................................................2412.002.00--------------2.00------------------------------------------------------------
......................................................................................................................................................................................................AGATGGTACCTTCCTGGCTGTAGGAT..........................2612.002.00-1.00----------1.00--------------------------------------------------------------
.....................................................................ATAGGATTCATTCATTAATTGCC..............................................................................................................................................................2312.002.00------2.00--------------------------------------------------------------------
..................GGATTGTGTATTAGACTGGATGACC...............................................................................................................................................................................................................2512.002.00--2.00------------------------------------------------------------------------
...............................................................TAGTGGATAGGATTCGGCA........................................................................................................................................................................1921.000.500.50---------------------------------------------0.50----------------------------
...............................................................TAGTGGATAGGATTCTGCG........................................................................................................................................................................1921.000.500.50---0.50----------------------------------------------------------------------
.......................................................................................................................................................................................................................CTGTAGGATCTCATGACAACTTTATTTACC.....3011.001.00------------------------------1.00--------------------------------------------
...............................................................TAGTGGATAGGATTCAAA.........................................................................................................................................................................181.000.00-------------1.00-------------------------------------------------------------
........................................................................................................................................................................................................................TGTAGGATCTCATGACAACTTTATTT........2611.001.00---------------------------------1.00-----------------------------------------
........................................................ATGTACTTAGTGGATAGGATTC............................................................................................................................................................................2211.001.00-----------------------1.00---------------------------------------------------
................................................................................................................................................................................CAACACTGACCTATTTTATTCTAGAA................................................261.000.00------------------------------------------1.00--------------------------------
................................................................AGTGGATAGGATTCAGCTC.......................................................................................................................................................................191.000.00----------------1.00----------------------------------------------------------
...............................................................TAGTGGATAGGATTCAGCGC.......................................................................................................................................................................201.000.00----------------------------1.00----------------------------------------------
..............................................................................................................................................................................................................CCTTCCTGGCTGTAGGATC.........................1911.001.00---------------------------------------------1.00-----------------------------
.....................................................................................................................................................................................................TAGATGGTACCTTCCTGGCTGTAGG............................2511.001.00------------------------------------1.00--------------------------------------
............AAGAAGGGATTGTGTATTAGACTGGATGA.................................................................................................................................................................................................................2911.001.00------------1.00--------------------------------------------------------------
..................GGATTGTGTATTAGACTGGATGATA...............................................................................................................................................................................................................251.000.00--1.00------------------------------------------------------------------------
...................................................................................................................................................................................................................CTGGCTGTAGGATCTCATGAC..................2111.001.00----------1.00----------------------------------------------------------------
......................................................................................................................................................................................................AGATGGTACCTTCCTGGCTGTAGGAG..........................261.000.00-1.00-------------------------------------------------------------------------
...............................................................TAGTGGATAGGATTCTGC.........................................................................................................................................................................1821.000.500.50---------------------------------------------------------------------0.50----
...........................................................................................................................................................................................................GTACCTTCCTGGCTGTAG.............................1811.001.00---------------------------------------1.00-----------------------------------
............................................................................................................................................................................................ATTTTATTCTAGATGGTACCTTCCTGG...................................2711.001.00-----------------------------------1.00---------------------------------------
................................................................AGTGGATAGGATTCATCG........................................................................................................................................................................181.000.001.00--------------------------------------------------------------------------
................................................................AGTGGATAGGATTCAGAAC.......................................................................................................................................................................191.000.00----------------1.00----------------------------------------------------------
..........................................................................................................................................................................................................GGTACCTTCCTGGCTGTTGTT...........................211.000.00-1.00-------------------------------------------------------------------------
......................................................................................................................................................................................................AGATGGTACCTTCCTGGCTGTAGG............................2411.001.00---1.00-----------------------------------------------------------------------
..............................................................................................................................................................TCAGTATATTTCTCTAAAC.........................................................................191.000.00--------------------------------------1.00------------------------------------
..........................................................................................................................................................................................................................TAGGATCTCATGACAACT..............1811.001.00--------------------------------------------1.00------------------------------
.........................................................................................................................................................................................................................GTAGGATCTCATGACAACTTTATTT........2511.001.00-----------------------------1.00---------------------------------------------
........................................................................................................................................................................................................................TGTAGGATCTCATGACAAC...............1911.001.00-------------------------------1.00-------------------------------------------
...........................................................................................................................................................................................................GTACCTTCCTGGCTGTAGG............................1911.001.00---1.00-----------------------------------------------------------------------
........CTCCAAGAAGGGATTGTGTATTAGACTGGATG..................................................................................................................................................................................................................3211.001.00--------------------------1.00------------------------------------------------
...............................................................TAGTGGATAGGATTCGGGG........................................................................................................................................................................1920.500.50---------------------------------------------------------------0.50-----------
...............................................................TAGTGGATAGGATTCGGA.........................................................................................................................................................................1820.500.50-------------0.50-------------------------------------------------------------
...............................................................TAGTGGATAGGATTCGGCC........................................................................................................................................................................1920.500.50---------0.50-----------------------------------------------------------------
...............................................................TAGTGGATAGGATTCGCCG........................................................................................................................................................................1920.500.50----0.50----------------------------------------------------------------------
...............................................................TAGTGGATAGGATTCGGCT........................................................................................................................................................................1920.500.50-----------------------------------------0.50---------------------------------
...............................................................TAGTGGATAGGATTCGGTG........................................................................................................................................................................1920.500.50---------0.50-----------------------------------------------------------------
...............................................................TAGTGGATAGGATTC............................................................................................................................................................................1520.500.50-------------------------------------------------------0.50-------------------
...............................................................TAGTGGATAGGATTCG...........................................................................................................................................................................1620.500.50-----------------------------------------------0.50---------------------------
...............................................................TAGTGGATAGGATTCGGAG........................................................................................................................................................................1920.500.50-------------------0.50-------------------------------------------------------
..........CCAAGAAGGGATTGTG................................................................................................................................................................................................................................1640.250.25-------------------------------------------------------------------------0.25-
...................................................................................................................................................................................................................CTGGCTGTAGGATCT........................1580.120.12--------------------------------------------------------------------------0.12

Antisense strand
GTAAGCATCTCCAAGAAGGGATTGTGTATTAGACTGGATGACCATTTATTTTTCAAATGTACTTAGTGGATAGGATTCATTCATTAATTGCCAAATAGTTAAATTGATGAGATTTAACAGCATTTGTAAAATCAGTAAAATAACAGTAAATAAATTTATCAGTATATTTCTCTAGTCAACACTGACCTATTTTATTCTAGATGGTACCTTCCTGGCTGTAGGATCTCATGACAACTTTATTTACCTCTAT
..........................................................(((.(((((((((.......))))))))).))).((((((....(((((((((((((.((((...)))).))))).((......))...........))))))))...........((((....))))))))))..........................................................
..........................................................59...........................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		TAX577743(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037937(GSM510475)
293cand2. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		TAX577740(Rovira)
total RNA. (breast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR038854(GSM458537)
MM653. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577580(Rovira)
total RNA. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577588(Rovira)
total RNA. (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335SRR038857(GSM458540)
D20. (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR038858(GSM458541)
MEL202. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
.............................................................................................................AGATTTAACAGCATTGAA........................................................................................................................... 181.000.00---------1.00-----------------------------------------------------------------
........................................................................................................................................AAAATAACAGTAAATTCCC............................................................................................... 191.000.00------1.00--------------------------------------------------------------------