ID: uc002rqs.2_intron_0_0_chr2_38523733_r.5p
GENE: (12)
chr2:38525086-38525335-


(1)
AGO3.ip 		(7)
B-CELL 		(2)
BRAIN 		(1)
BREAST 		(6)
CELL-LINE 		(2)
CERVIX 		(2)
HEART 		(2)
HELA 		(1)
KIDNEY 		(5)
LIVER 		(4)
OTHER 		(9)
SKIN 		(1)
TESTES 		(2)
XRN.ip

Sense strand
GAGAAATTGGAACAGTGATTGATCAGATTGCTGAAACACTATGGGAACAGGTTGGTATCTATCTTTTGGTTTTTTAGTGACTAATCTTATTTTCCTGTGACTTTCCATCCTTTGCAGTATTTGTACTCCGACTTTGCCTTCATGTGAGGAATGTCAAAAGGATGTCTTCTGTTTTGTTCAGATGTAGAATCTTTATGAATTGAAGATTTTTTCTTTAAAGTTATAATTTTAATGTACTTTGGTTAGCCTA
.........................................................................................................((((((((..((((....))))..(((....((((.....))))...))).))))))))(((((...(((((..((((.....))))..)))))..)))))............................................
..............................................................................................95..............................................................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR189782SRR189784SRR189783SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040016(GSM532901)
G645N. (cervix)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		GSM416733(GSM416733)
HEK293. (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................................................................ACTTTCCATCCTTTGCAGCAT..................................................................................................................................21259.001.5051.00-8.00---------------------------------------
...................................................................................................ACTTTCCATCCTTTGCAGTATTTGTACTCC.........................................................................................................................30110.0010.00-6.004.00---------------------------------------
...................................................................................................ACTTTCCATCCTTTGCAGTATTTGTACTC..........................................................................................................................2919.009.00-8.001.00---------------------------------------
...................................................................................................ACTTTCCATCCTTTGCAGTATTTGTACTCCG........................................................................................................................3118.008.00-3.003.002.00--------------------------------------
...................................................................................................................................................................................................TGAATTGAAGATTTTGAT.....................................184.000.00-----3.00--------------1.00---------------------
.............................................................................................................CTTTGCAGTATTTGTACTCC.........................................................................................................................2014.004.00---4.00--------------------------------------
...................................................................................................................................................................................AGATGTAGAATCTTTATGAATTGAAGAT...........................................2813.003.00----3.00-------------------------------------
...................................................................................................ACTTTCCATCCTTTGCAGTAC..................................................................................................................................212.000.002.00-----------------------------------------
...............................................................................ACTAATCTTATTTTCCTGTGACTTTCC................................................................................................................................................2712.002.00-2.00----------------------------------------
............................TGCTGAAACACTATGGGAACAGGTTGGTATC...............................................................................................................................................................................................3112.002.00---------2.00--------------------------------
.........................................................................................................CATCCTTTGCAGTATTTGTACTCC.........................................................................................................................2412.002.00---2.00--------------------------------------
..................................AACACTATGGGAACAG........................................................................................................................................................................................................1612.002.00-2.00----------------------------------------
.............................GCTGAAACACTATGGGAACAGGTTGGTATCT..............................................................................................................................................................................................3112.002.00-----------------------1.00---1.00--------------
....................................................................................................CTTTCCATCCTTTGCAGCAT..................................................................................................................................202.000.002.00-----------------------------------------
.................................AAACACTATGGGAACAGGT......................................................................................................................................................................................................1912.002.00------2.00-----------------------------------
...................................................................................................ACTTTCCATCCTTTGCAG.....................................................................................................................................1821.501.50-0.50---------------1.00------------------------
...................................................................................................ACTTTCCATCCTTTGCAT.....................................................................................................................................181.000.00--1.00---------------------------------------
................GATTGATCAGATTGCTGAAACAC...................................................................................................................................................................................................................2311.001.00-------------------------1.00----------------
.....................................................................................................TTTCCATCCTTTGCAGTATTTGTACCCCG........................................................................................................................291.000.00--1.00---------------------------------------
..................................................................................................................................................................................CAGATGTAGAATCTTTATGAATTGA...............................................2511.001.00-----------1.00------------------------------
......................TCAGATTGCTGAAACACTATGGGAACAG........................................................................................................................................................................................................2811.001.00-----------------------------------1.00------
.............................................................................................................CTTTGCAGTATTTGTACTCCG........................................................................................................................2111.001.00--1.00---------------------------------------
....................................................................................................CTTTCCATCCTTTGCAGTAT..................................................................................................................................2011.001.00-1.00----------------------------------------
..............................CTGAAACACTATGGGAA...........................................................................................................................................................................................................1711.001.00-------1.00----------------------------------
............CAGTGATTGATCAGATTGCT..........................................................................................................................................................................................................................2011.001.00-------1.00----------------------------------
...................................................................................................ACTTTCCATCCTTTGCAGCCT..................................................................................................................................2121.001.50--1.00---------------------------------------
........................AGATTGCTGAAACACTATGGGAACA.........................................................................................................................................................................................................2511.001.00------------------1.00-----------------------
........GGAACAGTGATTGATCAGATTGCTGA........................................................................................................................................................................................................................2611.001.00----------------------1.00-------------------
...AAATTGGAACAGTGATTGAT...................................................................................................................................................................................................................................2011.001.00----------------------------1.00-------------
....................................................................................TCTTATTTTCCTGTGACTTTCGAAC.............................................................................................................................................251.000.00---------------------------------------1.00--
...............TGATTGATCAGATTGCTGAAACAC...................................................................................................................................................................................................................2411.001.00---------------------1.00--------------------
.........................................TGGGAACAGGTTGGTATCT..............................................................................................................................................................................................1911.001.00------------------------------------1.00-----
............................................................................................................................................CATGTGAGGAATGTCCCAG...........................................................................................191.000.00-------------------1.00----------------------
.....................ATCAGATTGCTGAAACACTATGGG.............................................................................................................................................................................................................2411.001.00------------1.00-----------------------------
...AAATTGGAACAGTGATTGA....................................................................................................................................................................................................................................1911.001.00----------------------------------1.00-------
.......................CAGATTGCTGAAACACTATGGGAACA.........................................................................................................................................................................................................2611.001.00-------------1.00----------------------------
...........................................................................................................................................TCATGTGAGGAATGTCAAAAGG.........................................................................................2211.001.00--------------------------------1.00---------
...............................................................................ACTAATCTTATTTTCCTGTGACTT...................................................................................................................................................2411.001.00--1.00---------------------------------------
..............................CTGAAACACTATGGGAACA.........................................................................................................................................................................................................1911.001.00------------------------------1.00-----------
...............................................................................................................TTGCAGTATTTGTACTCCGACTTTGCCT...............................................................................................................2811.001.00----------------1.00-------------------------
...................................................................................................ACTTTCCATCCTTTGCAGTAT..................................................................................................................................2111.001.00-1.00----------------------------------------
..........................ATTGCTGAAACACTATGGGA............................................................................................................................................................................................................2011.001.00--------------1.00---------------------------
.........................................................................................................................................CTTCATGTGAGGAATGTCAAAAGGATG......................................................................................2711.001.00---------------1.00--------------------------
...................................................................................................ACTTTCCATCCTTTGCAGCGT..................................................................................................................................2121.001.50--1.00---------------------------------------
.......TGGAACAGTGATTGATCAGATTGCT..........................................................................................................................................................................................................................2511.001.00-------------------------------1.00----------
...................................................................................................ACTTTCCATCCTTTGCATCAT..................................................................................................................................211.000.001.00-----------------------------------------
.AGAAATTGGAACAGTGATTGA....................................................................................................................................................................................................................................2111.001.00-----------------------------1.00------------
..........................................................................................................................................................CAAAAGGATGTCTTCTGTTTTGTTCA......................................................................2611.001.00--------1.00---------------------------------
..................TTGATCAGATTGCTGAAA......................................................................................................................................................................................................................1811.001.00--------------------------1.00---------------
................................GAAACACTATGGGAACAG........................................................................................................................................................................................................1811.001.00------------------------1.00-----------------
.......................................................................................................TCCATCCTTTGCAGTATTTGTACTCCG........................................................................................................................2711.001.00-1.00----------------------------------------
..................TTGATCAGATTGCTGAAACACTATGGGA............................................................................................................................................................................................................2811.001.00----------1.00-------------------------------
...................................................................................................ACTTTCCATCCTTTGCAGTATTTGTACTCCA........................................................................................................................3111.0010.00-1.00----------------------------------------
...................................................................................................................................................................................AGATGTAGAATCTTTATGAATTGT...............................................241.000.00--------1.00---------------------------------
....................................................................................................CTTTCCATCCTTTGCAGTATTTGTACT...........................................................................................................................2711.001.00--1.00---------------------------------------
..................................................................................................................................................AGGAATGTCAAAAGGACTT.....................................................................................191.000.00--------------------------------------1.00---
.............................................................................................................................................................................................................................TATAATTTTAATGTACTTTGGTT......2311.001.00-------------------------------------1.00----
........................................................................................................CCATCCTTTGCAGTATTTGTACTC..........................................................................................................................2411.001.00-1.00----------------------------------------
...................................................................................................ACTTTCCATCCTTTGCAGTATTTGTACCCCG........................................................................................................................311.000.00--1.00---------------------------------------
.AGAAATTGGAACAGTGATT......................................................................................................................................................................................................................................1920.500.50----------------------------------------0.50-
.....ATTGGAACAGTGATTGA....................................................................................................................................................................................................................................1720.500.50----------0.50-------------------------------
..........................................................................................................................................................................GTTTTGTTCAGATGTAGA..............................................................1820.500.50-----------------------------------------0.50
...AAATTGGAACAGTGAT.......................................................................................................................................................................................................................................1640.250.25-----------0.25------------------------------
....................................................................................................................................TTTGCCTTCATGTGAG......................................................................................................1650.200.20-----------0.20------------------------------

Antisense strand
GAGAAATTGGAACAGTGATTGATCAGATTGCTGAAACACTATGGGAACAGGTTGGTATCTATCTTTTGGTTTTTTAGTGACTAATCTTATTTTCCTGTGACTTTCCATCCTTTGCAGTATTTGTACTCCGACTTTGCCTTCATGTGAGGAATGTCAAAAGGATGTCTTCTGTTTTGTTCAGATGTAGAATCTTTATGAATTGAAGATTTTTTCTTTAAAGTTATAATTTTAATGTACTTTGGTTAGCCTA
.........................................................................................................((((((((..((((....))))..(((....((((.....))))...))).))))))))(((((...(((((..((((.....))))..)))))..)))))............................................
..............................................................................................95..............................................................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR189782SRR189784SRR189783SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040016(GSM532901)
G645N. (cervix)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		GSM416733(GSM416733)
HEK293. (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................................................................................................................................................................TCAGATGTAGAATCTCGAT...................................................... 191.000.00---------------------------------1.00--------
..................................................................................................................................................................................................................TTCTTTAAAGTTATAACAT..................... 191.000.00------1.00-----------------------------------
....................................................................................................................................................................................................................................TTAATGTACTTTGGTTTC.... 181.000.00-1.00----------------------------------------
................................................................................................AGGATGGAAAGTCAC........................................................................................................................................... 1590.110.11------------0.11-----------------------------