ID: uc002rpz.2_intron_4_0_chr2_37439183_r
GENE: (11)
chr2:37439133-37439527-


(1)
AGO2.ip
(4)
B-CELL
(4)
BRAIN
(3)
BREAST
(12)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(3)
HEART
(4)
LIVER
(2)
OTHER
(9)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
GAAGATGATAACTGTTTCAGCTCTGGAAAGGATGATATGGATTTTGCTGGGTAACATACTTCTATCTTCTCCTTCCTATTTTTCTAGCATTTCCCAAATTGTTGTCCCTCAGAACAGTAGACCACAGAACTATATGATAAAGGGGAAATGTAGTCAAGTAAGTTTGGGAAGTGGATACAGTACTTTCATCTTTGACATTTATAAAGCACGTTATTATTTACTCTGAGCAGTCTGCAAAGCTTTCTCCTTCTGAGTCATTTAATAGCCTACTGCCCTAGTAGTCAGCAAAACACTACTTTAGAAAATACTGCCTCCTCTTGTATTACAAGTTGTGTTTTTTTCCAGAAACGTGAAAAAGAGAACAAAAGGAGCTAAGGATAACACATTAGATGAAG
...........................................................................................................((((((...((((.........)))).......(((((((((((((((((((((((...(((((((.......))))))).....((((.............))))..))))))).))).....)))))....)))))))))))))).............................................................................................................................................
......................................................................................................103......................................................................................................................................................256.........................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189787SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040037(GSM532922)
G243T. (cervix)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037937(GSM510475)
293cand2. (cell line)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
..........................................................................................................................................................................................................................................CAAAGCTTTCTCCTTTTG...............................................................................................................................................1842.000.0042.00-----------------------------------------------
...................................TATGGATTTTGCTGGAA.......................................................................................................................................................................................................................................................................................................................................................176.000.00-6.00----------------------------------------------
........................GGAAAGGATGATATGGATTT...............................................................................................................................................................................................................................................................................................................................................................2015.005.00------3.00----1.00--1.00---------------------------------
..........................................................................................................................................................................................................................................CAAAGCTTTCTCCTTTCG...............................................................................................................................................183.000.003.00-----------------------------------------------
..........................................................................................................................................................................................................................................CAAAGCTTTCTCCTTCTGGGCT...........................................................................................................................................222.000.00--2.00---------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................CGTGAAAAAGAGAACAAAAGGAGC.......................2412.002.00------------2.00-----------------------------------
..........................AAAGGATGATATGGATTTT..............................................................................................................................................................................................................................................................................................................................................................1912.002.00---1.00------1.00-------------------------------------
..AGATGATAACTGTTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................1812.002.00-----2.00------------------------------------------
...........................................................................................................CTCAGAACAGTAGACCACAGA...........................................................................................................................................................................................................................................................................2112.002.00----2.00-------------------------------------------
......................................................................................................................................TGATAAAGGGGAAATGAGTC.................................................................................................................................................................................................................................................202.000.00---------2.00--------------------------------------
..........................................................................................................................................................................................................................................CAAAGCTTTCTCCTTTTA...............................................................................................................................................182.000.002.00-----------------------------------------------
..............................................................................................................................GAACTATATGATAAAGGGGAAATG.....................................................................................................................................................................................................................................................2412.002.00-----2.00------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................AAGAGAACAAAAGGAGCTAAGGAT................2412.002.00--------2.00---------------------------------------
.................................................................................................................ACAGTAGACCACAGAACGTGG.....................................................................................................................................................................................................................................................................211.000.00------------------------1.00-----------------------
............................................................................................................................................................................................................................................................................................................................................................................AAAGGAGCTAAGGATAACACATT........2311.001.00------------------------------------------1.00-----
............................................................................................................................................................................................................................................................................................................................................................................AAAGGAGCTAAGGATAACA............1911.001.00--------------1.00---------------------------------
.................................................................................................................................CTATATGATAAAGGGGAAATGT....................................................................................................................................................................................................................................................2211.001.00--------------------------------------------1.00---
..........ACTGTTTCAGCTCTGGAAAGGACG.........................................................................................................................................................................................................................................................................................................................................................................241.000.00-----------------1.00------------------------------
.................CAGCTCTGGAAAGGATGAT.......................................................................................................................................................................................................................................................................................................................................................................1911.001.00-----------1.00------------------------------------
.......................TGGAAAGGATGATATGGATTT...............................................................................................................................................................................................................................................................................................................................................................2111.001.00-----------------------1.00------------------------
........................................................................................................................................................................................................................................................................................................................................................................AACAAAAGGAGCTAAGGATAACAC...........2411.001.00------------------------------1.00-----------------
..........................................................................................................................................................................................................................................................................................................................................................AACGTGAAAAAGAGAACAAAAGG..........................2311.001.00----1.00-------------------------------------------
..........................................................................................................................................................................................................................................CAAAGCTTTCTCCTTTTGG..............................................................................................................................................191.000.001.00-----------------------------------------------
..........................................................................................................................................................................................................................................CAAAGCTTTCTCCTTTGG...............................................................................................................................................181.000.001.00-----------------------------------------------
...........CTGTTTCAGCTCTGGTTTT.............................................................................................................................................................................................................................................................................................................................................................................191.000.00---------------------------------1.00--------------
............................................................TCTATCTTCTCCTTCTTTG............................................................................................................................................................................................................................................................................................................................191.000.00--------------------1.00---------------------------
........................................................................................................................................................................................................................................................................................................................................................................AACAAAAGGAGCTAAGGATAACACATCAG......291.000.00--1.00---------------------------------------------
........TAACTGTTTCAGCTCTGGAAAGGATGATATGGA..................................................................................................................................................................................................................................................................................................................................................................3311.001.00-------------------------1.00----------------------
............................................................................................................................................AGGGGAAATGTAGTCAAGT............................................................................................................................................................................................................................................1911.001.00---------------------1.00--------------------------
.....................TCTGGAAAGGATGATATGGATTTTGCTG..........................................................................................................................................................................................................................................................................................................................................................2811.001.00------------------------------------1.00-----------
...........................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGCTAAGGAAGC..............181.000.00--------------------------1.00---------------------
.......................................................................................................................................................................................................................................................................................................................................................................GAACAAAAGGAGCTAAGGA.................1911.001.00---------------------------------------1.00--------
..........................................................................................................................................................................................................................................................................................................................................................AACGTGAAAAAGAGAACAAAAGGAGC.......................2611.001.00-------1.00----------------------------------------
.....................TCTGGAAAGGATGATATGGATTTTGCTGG.........................................................................................................................................................................................................................................................................................................................................................2911.001.00-------1.00----------------------------------------
..........ACTGTTTCAGCTCTGGAAAGGATGAT.......................................................................................................................................................................................................................................................................................................................................................................2611.001.00-----------------------------------1.00------------
...........................AAGGATGATATGGATTTTGCTGGAAAC.....................................................................................................................................................................................................................................................................................................................................................271.000.00------------------1.00-----------------------------
..........................................................................................................................................................................................................................................CAAAGCTTTCTCCTTCTGGGGT...........................................................................................................................................221.000.00--1.00---------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................GTGAAAAAGAGAACAAAAGGAGC.......................2311.001.00----------------1.00-------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGCTAAGGATAACA............2011.001.00---1.00--------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................AACAAAAGGAGCTAAGGATATT.............221.000.00--------------------------------------1.00---------
.....................TCTGGAAAGGATGATATGGATTTTG.............................................................................................................................................................................................................................................................................................................................................................2511.001.00----------------------------------1.00-------------
..........................................................................................................................................................................................................................................CAAAGCTTTCTCCTTCTGGG.............................................................................................................................................201.000.00--1.00---------------------------------------------
...............................................................................................................................................................................................................ACGTTATTATTTACTCTGAGCAG.....................................................................................................................................................................2311.001.00-----------------------------1.00------------------
...................................................................................................................AGTAGACCACAGAACTATATGATAAAGGG...........................................................................................................................................................................................................................................................2911.001.00-----------------------------------------1.00------
.................................................................................................................................................................................................................................................................................................................................................................AAAAGAGAACAAAAGGAGCTAAGGATA...............2711.001.00--------------------------------1.00---------------
.................................GATATGGATTTTGCTGG.........................................................................................................................................................................................................................................................................................................................................................1711.001.00----------------------------------------1.00-------
.................................................................................................................ACAGTAGACCACAGAACTTTGT....................................................................................................................................................................................................................................................................221.000.00--1.00---------------------------------------------
...................................................TAACATACTTCTATCTTCTCCT..................................................................................................................................................................................................................................................................................................................................2211.001.00-------------------------------------------1.00----
........................................................................................................................................................................................................................................................................................................................................................................AACAAAAGGAGCTAAGGATAACACACTAG......291.000.00---------------1.00--------------------------------
..........................................................................................................................................................................................................................................CAAAGCTTTCTCCTTCTGGCCT...........................................................................................................................................221.000.00-------------1.00----------------------------------
............................................................................................................................................................................................................................................................................................................................................................................AAAGGAGCTAAGGATAACACA..........2111.001.00-------------------------------1.00----------------
.....................................................................................................................................................................................................................................................................................................................................CAAGTTGTGTTTTTTTGGC...................................................191.000.00-------------------1.00----------------------------
...................GCTCTGGAAAGGATGATATGGATT................................................................................................................................................................................................................................................................................................................................................................2411.001.00---1.00--------------------------------------------
.....................TCTGGAAAGGATGATATGGATTTT..............................................................................................................................................................................................................................................................................................................................................................2411.001.00----------1.00-------------------------------------
....................................................................................................................................................................................................................................................................................AGTAGTCAGCAAAACAC......................................................................................................1730.330.33----------------0.33-------------------------------
.....................................................................................................................................ATGATAAAGGGGAAATG.....................................................................................................................................................................................................................................................1730.330.33----------------------------------------------0.33-
...........CTGTTTCAGCTCTGGAA...............................................................................................................................................................................................................................................................................................................................................................................1730.330.33---------------------------------------------0.33--
................TCAGCTCTGGAAAGGA...........................................................................................................................................................................................................................................................................................................................................................................1690.110.11-----------------0.11------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................AAGGAGCTAAGGATA...............1590.110.11-----------------------------------------------0.11

Antisense strand
GAAGATGATAACTGTTTCAGCTCTGGAAAGGATGATATGGATTTTGCTGGGTAACATACTTCTATCTTCTCCTTCCTATTTTTCTAGCATTTCCCAAATTGTTGTCCCTCAGAACAGTAGACCACAGAACTATATGATAAAGGGGAAATGTAGTCAAGTAAGTTTGGGAAGTGGATACAGTACTTTCATCTTTGACATTTATAAAGCACGTTATTATTTACTCTGAGCAGTCTGCAAAGCTTTCTCCTTCTGAGTCATTTAATAGCCTACTGCCCTAGTAGTCAGCAAAACACTACTTTAGAAAATACTGCCTCCTCTTGTATTACAAGTTGTGTTTTTTTCCAGAAACGTGAAAAAGAGAACAAAAGGAGCTAAGGATAACACATTAGATGAAG
...........................................................................................................((((((...((((.........)))).......(((((((((((((((((((((((...(((((((.......))))))).....((((.............))))..))))))).))).....)))))....)))))))))))))).............................................................................................................................................
......................................................................................................103......................................................................................................................................................256.........................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189787SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040037(GSM532922)
G243T. (cervix)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037937(GSM510475)
293cand2. (cell line)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
...................................................................................................................................................................................................................................................CTCCTTCTGAGTCATTCGAT.................................................................................................................................... 201.000.00-------------1.00----------------------------------
................................................................GGGAAATGCTAGAAAAATAGGAAGGAGAAGA............................................................................................................................................................................................................................................................................................................ 3111.001.00----------------------1.00-------------------------
..........................................................................................................................................................................................................................................................................................................TAGAAAATACTGCCTTAAA.............................................................................. 191.000.00----------------------------1.00-------------------
..........................................................................................................................................AAAGGGGAAATGTAGTTTTT............................................................................................................................................................................................................................................. 201.000.00---------------1.00--------------------------------
.............................................................AAATGCTAGAAAAATAGGAAGGAGAAGATAG............................................................................................................................................................................................................................................................................................................... 3111.001.00----1.00-------------------------------------------
...............................................................................................................................................................................................................................................................................................................AATACTGCCTCCTCTGA........................................................................... 171.000.00---------------------------1.00--------------------
.............................................................................................................................................................................................................................................................................................................AAAATACTGCCTCCTCTGGTT......................................................................... 211.000.00-------------------------------------1.00----------
............................................................................................................................................................................................................................................................................................................GAAAATACTGCCTCCCAT............................................................................. 181.000.001.00-----------------------------------------------