ID: uc002rpo.1_intron_2_0_chr2_37217940_r.3p
GENE: (2)
chr2:37217890-37218139-


(2)
AGO2.ip
(1)
B-CELL
(2)
BRAIN
(2)
BREAST
(15)
CELL-LINE
(1)
FIBROBLAST
(5)
HEART
(1)
HELA
(2)
LIVER
(1)
OTHER
(6)
SKIN

Sense strand
AAATTCTGGCCAGGCACAGTGGCTGACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGAGGATCACTTGAGCTCAGGAGTTCAAGACCAGCCTGGACAACATGGCAAGACAACGTCTCTCTCTACAAAAATAAAAAAATAAAATGCCAAAATGTTTTAGAAACAGCACACTTCTTTCATTTTTCATTTTCAGAAGACTCTGTACCTACACCTGATGAAGTAAGCATGCTAACAGCAATTGCACTC
....................................................................................(((.(((...(((((.....)).))).((((...))))...)))................((((((..((((((....((((.........))))..)))))).))))))..)))...................................................
..................................................................................83...................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189785SRR029128(GSM416757)
H520. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR038860(GSM458543)
MM426. (cell line)
SRR189786SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
............................................................................................................................................................................CACTTCTTTCATTTTTTTTG..........................................................2023.000.00--7.003.008.005.00---------------------------------
............................................................................................................................................................................CACTTCTTTCATTTTTTTG...........................................................196.000.00--3.001.00-2.00---------------------------------
............................................................................................................................................................................CACTTCTTTCATTTTTCTTTG.........................................................214.000.00---4.00-----------------------------------
.......................................................................................AAGACCAGCCTGGACAACGGTG.............................................................................................................................................223.000.00-3.00-------------------------------------
........................................................AGGCAGGAGGATCACTTGAGCTCAGGAGTCCG..................................................................................................................................................................322.000.00-2.00-------------------------------------
............................................................AGGAGGATCACTTGAGCTCAGA........................................................................................................................................................................2202.002.00------1.00-------------1.00------------------
.....................................................................................TCAAGACCAGCCTGGACAACGGTG.............................................................................................................................................242.000.00-2.00-------------------------------------
............................................................AGGAGGATCACTTGAGCTCAG.........................................................................................................................................................................2102.002.00------1.00-----1.00--------------------------
.............................................................................................................................TCTACAAAAATAAAAACTTG.........................................................................................................202.000.00----------2.00----------------------------
.....................................................CCAAGGCAGGAGGATCACTCGAA..............................................................................................................................................................................231.000.00-1.00-------------------------------------
..........................................................................AGCTCAGGAGTTCAAGACCAGCCGGCC.....................................................................................................................................................271.000.00---------1.00-----------------------------
..............CACAGTGGCTGACACCTGTAATCCCAGCGCC.............................................................................................................................................................................................................311.000.001.00--------------------------------------
............................................................................................................................CTCTACAAAAATAAAAAAATAAAAAAAG..................................................................................................281.000.00------------------------1.00--------------
............................................................................................................................................................................CACTTCTTTCATTTTTCTTAG.........................................................211.000.00---1.00-----------------------------------
...................................................................................................................................................................................................AGAAGACTCTGTACCTACACCTGATGAA...........................2811.001.00-------1.00-------------------------------
.........................................................................................................................................................................................................CTCTGTACCTACACCTGATGAAG..........................2311.001.00--------------------------1.00------------
..............................................................GAGGATCACTTGAGCTCAGCAGC.....................................................................................................................................................................231.000.00----------------1.00----------------------
..................................................................................................GGACAACATGGCAAGAGAA.....................................................................................................................................191.000.00---------------------------------1.00-----
............................................................AGGAGGATCACTTGAGCTCAGAAT......................................................................................................................................................................2401.002.00------------------------------1.00--------
........................................................AGGCAGGAGGATCACTTGAGCTCAGGTGC.....................................................................................................................................................................291.000.00-1.00-------------------------------------
...................................................................................................................................................................................................AGAAGACTCTGTACCTACACCTG................................2311.001.00-------1.00-------------------------------
...............................................................AGGATCACTTGAGCTCAGGAG......................................................................................................................................................................2101.001.00-----------------------------1.00---------
....................................................................................................................................................................................................GAAGACTCTGTACCTACACC..................................2011.001.00--------1.00------------------------------
.........................................................................................................................................................................................................CTCTGTACCTACACCTGATGAAGTAAGC.....................2811.001.00-------------1.00-------------------------
....................................................................................................................................................................................................GAAGACTCTGTACCTACACCTGATGAAGTA........................3011.001.00-------1.00-------------------------------
...................................................................................................................................................................................................AGAAGACTCTGTACCTACA....................................1911.001.00-------------------1.00-------------------
.......................................................................................AAGACCAGCCTGGACAACTAGC.............................................................................................................................................221.000.00-1.00-------------------------------------
.............................................................................................................................................................................................................GTACCTACACCTGATGAAGTAAGCATGC.................2811.001.00--------1.00------------------------------
....................................................................................................................................................................................................GAAGACTCTGTACCTACACCTG................................2211.001.00-----------------------------------1.00---
.............................................................................................................................................................................ACTTCTTTCATTTTTCCTTT.........................................................201.000.00---1.00-----------------------------------
..................................................................ATCACTTGAGCTCAGGAGTCGCC.................................................................................................................................................................231.000.00-1.00-------------------------------------
.......................................................................................................................................................................................................................CTGATGAAGTAAGCATGCTAACAGCA.........2611.001.00--------1.00------------------------------
..........................................ACTTTGGGAGGCCAAGGCAGGAGCTC......................................................................................................................................................................................261.000.00-1.00-------------------------------------
............................................................AGGAGGATCACTTGAGCTCAGGAGTCCGC.................................................................................................................................................................291.000.00-1.00-------------------------------------
..............................................TGGGAGGCCAAGGCAGGAGCCCC.....................................................................................................................................................................................231.000.001.00--------------------------------------
...........................................................CAGGAGGATCACTTGAGCTCAGGAGTT....................................................................................................................................................................2701.001.00--------------1.00------------------------
........................................................AGGCAGGAGGATCACTTGAGCTCACGC.......................................................................................................................................................................271.000.00-1.00-------------------------------------
........................................................AGGCAGGAGGATCACTTGAGCTCGGGC.......................................................................................................................................................................271.000.00-1.00-------------------------------------
............................................................................................................................................................................CACTTCTTTCATTTTTTCTG..........................................................201.000.00---1.00-----------------------------------
.........................................................................................................................................................................................................................GATGAAGTAAGCATGCTAACAGCAATTG.....2811.001.00----------------------------------1.00----
..........................................................................AGCTCAGGAGTTCAAGACCAGCCGGC......................................................................................................................................................261.000.001.00--------------------------------------
..........................................ACTTTGGGAGGCCAAGGCAGGAGGATCCTCG.................................................................................................................................................................................311.000.001.00--------------------------------------
..................................................................................................................................................................................................CAGAAGACTCTGTACCTAC.....................................1911.001.00---------------------------1.00-----------
..................................................................ATCACTTGAGCTCAGGAGTCATA.................................................................................................................................................................231.000.00------------------------------------1.00--
....................................................................................TTCAAGACCAGCCTGGACTGT.................................................................................................................................................211.000.00------------------1.00--------------------
.......................................................................................AAGACCAGCCTGGACAACATGG.............................................................................................................................................2201.001.00------------1.00--------------------------
.............................................................................................................................................................................ACTTCTTTCATTTTTCCAAG.........................................................201.000.00---------1.00-----------------------------
............................................................AGGAGGATCACTTGAGCTCAGT........................................................................................................................................................................2201.002.00-----------------1.00---------------------
.................................................GAGGCCAAGGCAGGAGGATAAAA..................................................................................................................................................................................231.000.00-------------------------1.00-------------
...................................................................TCACTTGAGCTCAGGAGTCTAG.................................................................................................................................................................221.000.001.00--------------------------------------
..............................................TGGGAGGCCAAGGCAGGAGCACC.....................................................................................................................................................................................231.000.00-1.00-------------------------------------
.......................................AGCACTTTGGGAGGCCAAGGCAGGAGCACC.....................................................................................................................................................................................301.000.00-1.00-------------------------------------
...........................................................................GCTCAGGAGTTCAAGACCTCTG.........................................................................................................................................................221.000.00-----------1.00---------------------------
............................................................................CTCAGGAGTTCAAGACCAGCCGACC.....................................................................................................................................................251.000.001.00--------------------------------------
...TTCTGGCCAGGCACAGTGGCG..................................................................................................................................................................................................................................211.000.001.00--------------------------------------
..............................................TGGGAGGCCAAGGCAGGAGGATCCG...................................................................................................................................................................................251.000.001.00--------------------------------------
....................................................................................................................................................................................................GAAGACTCTGTACCTAC.....................................1720.500.50-------------------------------------0.50-
...................................................................................................................................................................................................AGAAGACTCTGTACCT.......................................1640.250.25--------------------------------------0.25
...................................................................................................................................................................................................AGAAGACTCTGTACC........................................1580.120.12-------------------------------------0.12-

Antisense strand
AAATTCTGGCCAGGCACAGTGGCTGACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGAGGATCACTTGAGCTCAGGAGTTCAAGACCAGCCTGGACAACATGGCAAGACAACGTCTCTCTCTACAAAAATAAAAAAATAAAATGCCAAAATGTTTTAGAAACAGCACACTTCTTTCATTTTTCATTTTCAGAAGACTCTGTACCTACACCTGATGAAGTAAGCATGCTAACAGCAATTGCACTC
....................................................................................(((.(((...(((((.....)).))).((((...))))...)))................((((((..((((((....((((.........))))..)))))).))))))..)))...................................................
..................................................................................83...................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189785SRR029128(GSM416757)
H520. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR038860(GSM458543)
MM426. (cell line)
SRR189786SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
...................................................GGCCAAGGCAGGAGGATCACTCCGG.............................................................................................................................................................................. 251.000.001.00--------------------------------------
..ATTCTGGCCAGGCACAGTGGCTGCTT.............................................................................................................................................................................................................................. 261.000.001.00--------------------------------------
......TGGCCAGGCACAGTGGCTGACACCTGTCG....................................................................................................................................................................................................................... 291.000.001.00--------------------------------------
............................................................AGGAGGATCACTTGAGCTCATAG....................................................................................................................................................................... 231.000.00-------------1.00-------------------------
................................................................................GGAGTTCAAGACCAGCCTGGAGAGC................................................................................................................................................. 251.000.001.00--------------------------------------
...................................................GGCCAAGGCAGGAGGATCACGTG................................................................................................................................................................................ 231.000.001.00--------------------------------------
.........................................................................................GACCAGCCTGGACAACATGGCAACCG....................................................................................................................................... 261.000.001.00--------------------------------------
........................................................................................AGACCAGCCTGGACAACATACC............................................................................................................................................ 221.000.00----------------------1.00----------------
....................................................................................................................................................................................................................CACCTGATGAAGTAAGCT.................... 181.000.00--------------------------------1.00------
...............................................................AGGATCACTTGAGCTCAGGAGTTCAAGACG............................................................................................................................................................. 301.000.00----------------------------1.00----------
............................................................AGGAGGATCACTTGAGCTCAGGAGTTACCC................................................................................................................................................................ 301.000.001.00--------------------------------------
............................................................................CTCAGGAGTTCAAGACCAGCCTGCGG.................................................................................................................................................... 261.000.00---------------1.00-----------------------
.............................................................GGAGGATCACTTGAGCTCAGGAGTTGCC................................................................................................................................................................. 281.000.001.00--------------------------------------
..........................................................................................................................CTCTCTACAAAAATAAAGGGA........................................................................................................... 211.000.001.00--------------------------------------
....................................................................................................................................AAATAAAAAAATAAAATGATAG................................................................................................ 221.000.00---------1.00-----------------------------
...................................................GGCCAAGGCAGGAGGATCACCG................................................................................................................................................................................. 221.000.001.00--------------------------------------
...................................................................................................................................AAAATAAAAAAATAAAATATCT................................................................................................. 221.000.00--1.00------------------------------------
...................................................GGCCAAGGCAGGAGGATCACTCAG............................................................................................................................................................................... 241.000.001.00--------------------------------------
....................................................................................................................................AAATAAAAAAATAAAATATCG................................................................................................. 211.000.00--1.00------------------------------------
.........................................CACTTTGGGAGGCCAAGGCAGGAGGATGGGG.................................................................................................................................................................................. 311.000.001.00--------------------------------------
.......................................................................................................................................TAAAAAAATAAAATGCCAGCA.............................................................................................. 211.000.00-------------------------------1.00-------
........................GACACCTGTAATCCCAGCACTTTTC......................................................................................................................................................................................................... 251.000.00-1.00-------------------------------------
............................................................AGGAGGATCACTTGAGCTCAGGAGTCCCC................................................................................................................................................................. 291.000.001.00--------------------------------------
.....................................................................................................................CGTCTCTCTCTACAAAAT................................................................................................................... 181.000.00-----------------------1.00---------------
................................................................GGATCACTTGAGCTCAGGAGTCTGC................................................................................................................................................................. 251.000.00-1.00-------------------------------------
...........................................................................................CCAGCCTGGACAACATGGCAAGAGA...................................................................................................................................... 251.000.00-1.00-------------------------------------
...........................................CTTTGGGAGGCCAAGGCAGGAGAAAA..................................................................................................................................................................................... 261.000.00---------------------1.00-----------------
.......................TGACACCTGTAATCCCAGCACTTTGGGCGCT.................................................................................................................................................................................................... 311.000.00-----------1.00---------------------------
......................TGGGATTACAGGTGTCAG.................................................................................................................................................................................................................. 1801.001.00------1.00--------------------------------
......................AAGTGCTGGGATTACAGGTGTCAG............................................................................................................................................................................................................ 2401.001.00--------------1.00------------------------
...............................................................................................................................ATTTTATTTTTTTATTTTTGTA..................................................................................................... 2260.170.17-0.17-------------------------------------