ID: uc002rnv.1_intron_13_0_chr2_31588411_r
GENE: XDH(22)
chr2:31588361-31588891-


(1)
AGO2.ip 		(1)
BRAIN 		(5)
BREAST 		(6)
CELL-LINE 		(2)
CERVIX 		(1)
HELA 		(1)
KIDNEY 		(5)
LIVER 		(6)
OTHER 		(9)
SKIN 		(4)
UTERUS

Sense strand
GAGACCCGGAGCACTGTGGTGTCCACGGCAGTGGCCCTGGCTGCATATAAGTGAGTTCCAAAGCCTGTTTCTCCCATCTGGCTCTGGGAAGAAGAATAAGGCTGTCTGTGCCAGGAAGGTTTTCAGGACTTCCCCCTGTTAGAATTAGTTTCCCCCTGCTTTGAATTCTCACAGCCCTCTGTTTTTAGAACCCTTGGGCATAGTGGGAGGGTAACATCGCCTGTTCCGTTGTGGTCTGGCACAGGTATCCACCTCTGATCTCTCCTACTGGCTGTGAGCTCTCTAAATGAAAGCACATACCTCGCTTCCTTATATTCTCCACCTTGTCTATCACAGTGCCTAGATGGCAAAGCAGCCCTGTACAGGTCTGCTCAGCGTGCAGGTGGAAAAGATGGCTTCCCGGCTGTTTTTATTCTGAGACTTGCAGGGCTGAGCTGCTGTTGAAGGCTCACAGGCTTCTAACACTGTCGGTAACCCCCAGGACCGGCCGCCCTGTGCGATGCATGCTGGACCGTGATGAGGACATGCTGA
.........................................................................................................................................................................................................................................................................................................................................................((((...((((((((((.((.....(((((.((((((.(((..(((....))).))).))))....)).))))).))))))))))))...))))((((.(((((....))))).)))).(((..((...))..)))..................................................
.........................................................................................................................................................................................................................................................................................................................................................346....................................................................................................................................481................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR189786SRR189784SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577744(Rovira)
total RNA. (breast)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029130(GSM416759)
DLD2. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR040027(GSM532912)
G220T. (cervix)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		TAX577580(Rovira)
total RNA. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189782TAX577741(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR343335DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR343334SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCCCTGTACAGGTCTATGA..............................................................................................................................................................2325.000.0010.0012.003.00-------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCCCTGTACAGGGCTA.................................................................................................................................................................2028.503.506.500.50---0.50-----------------------0.50----0.50-----
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACACTGTCGGTAACGATG....................................................205.000.00-------1.00--2.00----1.00-------1.00----------------
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCCCTGTACAGG.....................................................................................................................................................................1623.503.502.501.00--------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCCCTGTACAG......................................................................................................................................................................1553.003.001.800.200.40--------------------------------0.40-0.20--
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACACTGTCGGTAACGAT.....................................................193.000.00------1.00--2.00------------------------------
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCCCTGTACAGGTCTATG...............................................................................................................................................................223.000.001.001.001.00-------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACACTGTCGGTAAAG.......................................................173.000.00--3.00-------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCCCTGTACAGGG....................................................................................................................................................................1722.503.50-0.50----1.00---------0.50--------------0.50--------
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCCCTGTACAGGTCTATCA..............................................................................................................................................................232.000.00-1.001.00-------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCCCTGTACAGGTCTACGA..............................................................................................................................................................232.000.002.00---------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCCCTGTACAGGTCTATGC..............................................................................................................................................................232.000.001.001.00--------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCCCTGTACAGGGC...................................................................................................................................................................1821.503.50-0.50----0.50---------0.50-----------------------
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCCCTGTACAGGGCT..................................................................................................................................................................1921.503.500.500.50----------------------------0.50---------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGGCTTCTAACACTGTCGGTAACCCCCAG..................................................3211.001.00------------------1.00---------------------
................................................................................................................................CTTCCCCCTGTTAGAATTAGT..............................................................................................................................................................................................................................................................................................................................................................................................2111.001.00---1.00------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................ACAGGTCTGCTCAGCGTGTG......................................................................................................................................................201.000.00-----------------1.00----------------------
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCCCTGTACAGGTCTCTGA..............................................................................................................................................................231.000.00-1.00--------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGACCGTGATGAGGA........1811.001.00---1.00------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCCCTGTACAGGTCTATTA..............................................................................................................................................................231.000.001.00---------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCCCTGTACAGGTGTAT................................................................................................................................................................211.000.00-------1.00--------------------------------
................................................................................................................................................................................................................................................................................................................................................................................TGCTCAGCGTGCAGGTGGAAAAGATG.........................................................................................................................................2611.001.00--------1.00-------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGGACCGTGATGAGGACATGCT..2611.001.00----1.00-----------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCTGGACCGTGATGAGGA........2211.001.00---------------------------1.00------------
....................................................................................................................................................TTTCCCCCTGCTTTGAGCG............................................................................................................................................................................................................................................................................................................................................................................191.000.00-------------------------1.00--------------
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCCCTGTACAGGTCTCT................................................................................................................................................................211.000.00-----1.00----------------------------------
...........................................................................ATCTGGCTCTGGGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00---1.00------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCCCTGTACAGGTCTATC...............................................................................................................................................................221.000.00-1.00--------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCCCTGTACAGGTCTATGT..............................................................................................................................................................231.000.001.00---------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGACCGGCCGCCCTGTGCGATG.............................2411.001.00---1.00------------------------------------
.......................................................................TCCCATCTGGCTCTGGGAAGAAGAATAAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................3111.001.00--------1.00-------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACACTGTCGGTAAAGAT.....................................................191.000.00----------------------------1.00-----------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACACTGTCGGTAAAGA......................................................181.000.00-------------1.00--------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCTGGACCGTGATGAGG.........2111.001.00--------------1.00-------------------------
..................................................................................................AGGCTGTCTGTGCCAGGAAGGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00---1.00------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCCCTGTACAGGTCCATC...............................................................................................................................................................221.000.001.00---------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCTGGACCGTGATG............1811.001.00----1.00-----------------------------------
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCCCTGTACAGGTCTTTG...............................................................................................................................................................221.000.00--1.00-------------------------------------
.............................................................................................................................................................................................................................................................TCTGATCTCTCCTACTGGCT..................................................................................................................................................................................................................................................................2011.001.00---1.00------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACACTGTCGGTAACGA......................................................181.000.00--------------------1.00-------------------
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCCCTGTACAGGTCTATT...............................................................................................................................................................221.000.001.00---------------------------------------
.................................................................................................................................................................................................TTGGGCATAGTGGGAGGGTAA.............................................................................................................................................................................................................................................................................................................................2111.001.00----1.00-----------------------------------
..........................................................................CATCTGGCTCTGGGAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00---1.00------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................GGTGGAAAAGATGGCCGC....................................................................................................................................181.000.00------------------------1.00---------------
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCCCTGTACAGGTCTAAGC..............................................................................................................................................................231.000.00-1.00--------------------------------------
.................................................................................CTCTGGGAAGAAGAATAAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00-------------------1.00--------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCATGCTGGACCGTGATGAGG.........2311.001.00----1.00-----------------------------------
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCCCTGTACAGGCTCT.................................................................................................................................................................2020.503.50--------------------------------0.50-------
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCCCTGTACAGGGATA.................................................................................................................................................................2020.503.50---------------------------------0.50------
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCCCTGTACAGGGGTA.................................................................................................................................................................2020.503.500.50---------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCCCTGTACAGGGTTA.................................................................................................................................................................2020.503.50-------0.50--------------------------------
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCCCTGTACAGGGCTT.................................................................................................................................................................2020.503.50-0.50--------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCCCTGTACAGGGCCA.................................................................................................................................................................2020.503.500.50---------------------------------------

Antisense strand
GAGACCCGGAGCACTGTGGTGTCCACGGCAGTGGCCCTGGCTGCATATAAGTGAGTTCCAAAGCCTGTTTCTCCCATCTGGCTCTGGGAAGAAGAATAAGGCTGTCTGTGCCAGGAAGGTTTTCAGGACTTCCCCCTGTTAGAATTAGTTTCCCCCTGCTTTGAATTCTCACAGCCCTCTGTTTTTAGAACCCTTGGGCATAGTGGGAGGGTAACATCGCCTGTTCCGTTGTGGTCTGGCACAGGTATCCACCTCTGATCTCTCCTACTGGCTGTGAGCTCTCTAAATGAAAGCACATACCTCGCTTCCTTATATTCTCCACCTTGTCTATCACAGTGCCTAGATGGCAAAGCAGCCCTGTACAGGTCTGCTCAGCGTGCAGGTGGAAAAGATGGCTTCCCGGCTGTTTTTATTCTGAGACTTGCAGGGCTGAGCTGCTGTTGAAGGCTCACAGGCTTCTAACACTGTCGGTAACCCCCAGGACCGGCCGCCCTGTGCGATGCATGCTGGACCGTGATGAGGACATGCTGA
.........................................................................................................................................................................................................................................................................................................................................................((((...((((((((((.((.....(((((.((((((.(((..(((....))).))).))))....)).))))).))))))))))))...))))((((.(((((....))))).)))).(((..((...))..)))..................................................
.........................................................................................................................................................................................................................................................................................................................................................346....................................................................................................................................481................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR189786SRR189784SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577744(Rovira)
total RNA. (breast)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029130(GSM416759)
DLD2. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR040027(GSM532912)
G220T. (cervix)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		TAX577580(Rovira)
total RNA. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189782TAX577741(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR343335DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR343334SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
.................................................................................................................................................................................................................................................................................................................................................................AGCCCTGTACAGGTCTGCTATGA........................................................................................................................................................... 234.000.002.001.001.00-------------------------------------
...................................................................................................................................................................AATTCTCACAGCCCTCTTTT............................................................................................................................................................................................................................................................................................................................................................ 202.000.00------------2.00---------------------------
.................................................................................................................................................................................................................................................................................................................................................................AGCCCTGTACAGGTCTGCTATG............................................................................................................................................................ 221.000.001.00---------------------------------------
....................................................................................................................................................................................................................................................................................................................CTTATATTCTCCACCTTACA........................................................................................................................................................................................................... 201.000.00----------------------1.00-----------------
................................................................................................................................................................................................................................................................................................................................................................CAGCCCTGTACAGGTCTGCTTGA............................................................................................................................................................ 231.000.00-----1.00----------------------------------
.................................................................................................................................................................................................................................................................................................................................................................AGCCCTGTACAGGTCTGCTAT............................................................................................................................................................. 211.000.00-----------1.00----------------------------
.................................................................................................................................................................................................................................................................................................................................................................AGCCCTGTACAGGTCTGCTACG............................................................................................................................................................ 221.000.00--------------------------1.00-------------
...................................................................................................................................................................................................................................................................................................................................................................CCCTGTACAGGTCTGCTGTAA........................................................................................................................................................... 211.000.00-----------1.00----------------------------
.....................................................................................................................................................................................................................................................CACAGCCAGTAGGAGAGATCAGAGGTGGATA............................................................................................................................................................................................................................................................... 3111.001.00---------------------1.00------------------
.................................................................................................................................................................................................................................................................................................................................................................AGCCCTGTACAGGTCTGCTATA............................................................................................................................................................ 221.000.001.00---------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCCTGTGCGATGCATG......................... 181.000.001.00---------------------------------------
..............................................................................................................................................................................................................................................................................TTAGAGAGCTCACAGC..................................................................................................................................................................................................................................................... 1640.250.25------------------------------------0.25---
...................................................................................................................................................................................................CCCTCCCACTATGCCC................................................................................................................................................................................................................................................................................................................................ 1670.140.14--------------------------------------0.14-
.................................................................................................................GTCCTGAAAACCTTCC.................................................................................................................................................................................................................................................................................................................................................................................................................. 1690.110.11---------------------------------------0.11