ID: uc002rmo.2_intron_14_0_chr2_29164441_f.3p
GENE: WDR43(15)
chr2:29164978-29165227+


(3)
B-CELL
(2)
BREAST
(27)
CELL-LINE
(2)
HEART
(4)
HELA
(2)
LIVER
(3)
OTHER
(1)
RRP40.ip
(10)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
GAGTTTTTCAGCTTTACAGAGTAATTCTTTCCCTCTTGTATTTGAAGGACTTTTTTGCTCTGTATTGTATGAAGGTCCTCCATTATGGTGGTGGAGGGTGAGTTAGCAGCAAGCAGTGGGGAAGGTTGGGTATGCTGGTGGTCGTGATACTTGGGATATGTTTACACTCTACTTCAGAACAGTACTTTATCTTCTTCCAGGTAACAGCATCAGAGAAGACAAAGGGAGCAACTTCCCCTGGACAGAAGGC
......................................................................................................................................((((.((....((((...((....(((((.............)))))...)).))))..)).))))..................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR029127(GSM416756)
A549. (cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR029124(GSM416753)
HeLa. (hela)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR189787SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR029129(GSM416758)
SW480. (cell line)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR038856(GSM458539)
D11. (cell line)
GSM359203(GSM359203)
hepg2_untreated_b. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
TAX577746(Rovira)
total RNA. (breast)
GSM359187(GSM359187)
HepG2_2pM_1. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR029128(GSM416757)
H520. (cell line)
GSM359193(GSM359193)
HepG2_3pM_7. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM359204(GSM359204)
HepG2_nucl_low. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
..............................................................................................................................................................................CAGAACAGTACTTTATCTTCTTCCAG..................................................26134.0034.003.00--4.00-1.002.003.00-3.001.00-1.00---1.001.00-1.00-2.002.00--1.00--1.00----------1.001.00-1.00-1.00--1.001.00-1.00---
...................................................................................................................................................................................CAGTACTTTATCTTCTTCCAG..................................................21113.0013.0011.00----------------1.00----------------1.00-------------------
......................................................................................................................................CTGGTGGTCGTGATACTTGGGATATGTTTACACTCTACTTCAGAACAGTACTTTATCTTCTTCCAG..................................................6618.008.00-8.00----------------------------------------------------
.............................................................................................................................................................................TCAGAACAGTACTTTATCTTCTTCCAG..................................................2715.005.00---------------1.00----------1.00----1.001.00-----1.00---------------
............................................................................................................................................................................TTCAGAACAGTACTTTATCTTCTTCCAG..................................................2814.004.00--------2.00---------2.00-----------------------------------
...................................................................................................................................ATGCTGGTGGTCGTGATACTTGGGATATGTTTACACTCTACTTCAGAACAGTACTTTATCTTCTTCCAG..................................................6913.003.00--3.00---------------------------------------------------
..............................................................................................................................................................................CAGAACAGTACTTTATCTTCTTCCAT..................................................2612.002.00----------------1.00--1.00----------------------------------
..............................................................................................................................................................................CAGAACAGTACTTTATCTT.........................................................1912.002.00-----1.00--1.00---------------------------------------------
..............................................................................................................................................................................CAGAACAGTACTTTATCTTCTTC.....................................................2312.002.00--------------2.00---------------------------------------
..............................................................................................................................................................................CAGAACAGTACTTTATCTTCTTCCA...................................................2512.002.00-----------------------1.00------1.00-----------------------
..............................................................................................................................................................................................................GCATCAGAGAAGACAAAGGGAGCAA...................2512.002.00--------------------2.00---------------------------------
.......................................................................................................................................................................................................................AAGACAAAGGGAGCAACTTCCCCTGGACAGA....3112.002.00-----------1.00-----------------------1.00------------------
...................................................................................................................................................................................................................AGAGAAGACAAAGGGAGCA....................1911.001.00---------------------------------1.00--------------------
...............................................................................................................................GGGTATGCTGGTGGTCGTGATACTTGGGATATGTTTACACTCTACTTCAGAACAGTACTTTATCTTCTTCCAG..................................................7311.001.00---------------------------------------------1.00--------
..........................................................................................................................................................................................................................ACAAAGGGAGCAACTTCCCCTGGACAGAA...2911.001.00----------1.00-------------------------------------------
..............................................................................................................................................................................CAGAACAGTACTTTATCTTCTTCCAGA.................................................2711.0034.00-------------------------------------1.00----------------
...............................................................................................................................................GTGATACTTGGGATATGTTTACACTCTACTTCAGAACAGTACTTTATCTTCTTCCAG..................................................5711.001.00--1.00---------------------------------------------------
..................................................................................................................................................................................ACAGTACTTTATCTTCTTCCAG..................................................2211.001.00-----1.00------------------------------------------------
.............................................................................................................................................................................TCAGAACAGTACTTTATCTTCTTCCAT..................................................271.000.00---------------1.00--------------------------------------
................................................................................................................................................................................................................ATCAGAGAAGACAAAGGGAGC.....................2111.001.00----------------------------------------------1.00-------
..................................................................................................................................................................................................................CAGAGAAGACAAAGGGAGCAACTTCC..............2611.001.00---------------------------1.00--------------------------
.........................................................................................................................................GTGGTCGTGATACTTGGG...............................................................................................1811.001.00------------1.00-----------------------------------------
.................................................................................................................................................GATACTTGGGATATGTTTACACTCTACTTCAGAACAGTACTTTATCTTCTTCCAG..................................................5511.001.00--1.00---------------------------------------------------
.............................................AGGACTTTTTTGCTCTGTA..........................................................................................................................................................................................1911.001.00-------------------------------------------1.00----------
..........................................................................................................................................................................................................................ACAAAGGGAGCAACTTCCCCTGGACAGA....2811.001.00-----------1.00------------------------------------------
..............................................................................................................AAGCAGTGGGGAAGGTG...........................................................................................................................171.000.00-----------------------------------------1.00------------
.......................................ATTTGAAGGACTTTTTTGC................................................................................................................................................................................................1911.001.00-------------------------------------------------1.00----
.....................................................................................................................................................CTTGGGATATGTTTACAGAGC................................................................................211.000.00-------------1.00----------------------------------------
..................................CTTGTATTTGAAGGACTTTTT...................................................................................................................................................................................................2111.001.00------------------------1.00-----------------------------
........................................................................................................................................................................................CTTTATCTTCTTCCACTTG...............................................191.000.00----1.00-------------------------------------------------
............................................................................................................................................................................TTCAGAACAGTACTTTATCTTCT.......................................................2311.001.00------1.00-----------------------------------------------
..............................................................................................................................................................................CAGAACAGTACTTTATCTTCTT......................................................2211.001.00-----------------------1.00------------------------------
..............................................................................................................................................................................CAGAACAGTACTTTATCTTCTTCAAG..................................................2611.002.001.00-----------------------------------------------------
.......................................................................................................TAGCAGCAAGCAGTG....................................................................................................................................1530.670.67----0.67-------------------------------------------------
................................................................................................................................................................................................................ATCAGAGAAGACAAAGGGAG......................2020.500.50---------------------------------------------------0.50--
.......................................................................................................TAGCAGCAAGCAGTGATTG................................................................................................................................1930.330.67----0.33-------------------------------------------------
.....................................................................................................................................................................................................................AGAAGACAAAGGGAGCAATT.................2030.330.33-----------------------------------------------------0.33
.....................................................................................................................................................................................................................AGAAGACAAAGGGAGCAA...................1830.330.33----------------------------------------------------0.33-

Antisense strand
GAGTTTTTCAGCTTTACAGAGTAATTCTTTCCCTCTTGTATTTGAAGGACTTTTTTGCTCTGTATTGTATGAAGGTCCTCCATTATGGTGGTGGAGGGTGAGTTAGCAGCAAGCAGTGGGGAAGGTTGGGTATGCTGGTGGTCGTGATACTTGGGATATGTTTACACTCTACTTCAGAACAGTACTTTATCTTCTTCCAGGTAACAGCATCAGAGAAGACAAAGGGAGCAACTTCCCCTGGACAGAAGGC
......................................................................................................................................((((.((....((((...((....(((((.............)))))...)).))))..)).))))..................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR029127(GSM416756)
A549. (cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR029124(GSM416753)
HeLa. (hela)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR189787SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR029129(GSM416758)
SW480. (cell line)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR038856(GSM458539)
D11. (cell line)
GSM359203(GSM359203)
hepg2_untreated_b. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
TAX577746(Rovira)
total RNA. (breast)
GSM359187(GSM359187)
HepG2_2pM_1. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR029128(GSM416757)
H520. (cell line)
GSM359193(GSM359193)
HepG2_3pM_7. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM359204(GSM359204)
HepG2_nucl_low. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
......................................................................................................................................................................................................AGGTAACAGCATCAGATTTA................................ 201.000.00------------------------------------1.00-----------------
..............................................................................................................................................................................CAGAACAGTACTTTAGCAA......................................................... 191.000.00-------------1.00----------------------------------------
......................................................................................................................................................................................................AGGTAACAGCATCAGACTT................................. 191.000.00----1.00-------------------------------------------------
.........................................................................................................................................................................................................................................TCCCCTGGACAGAAGGCGCTA 211.000.00-----------------------------1.00------------------------