ID: uc002rlp.1_intron_0_0_chr2_28113710_f.5p
GENE: BRE(1)
chr2:28113660-28113909+


(16)
B-CELL 		(3)
BRAIN 		(8)
BREAST 		(29)
CELL-LINE 		(7)
CERVIX 		(3)
HEART 		(3)
HELA 		(1)
KIDNEY 		(3)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(19)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GGTACCTGTACCCCACGTAGTCGCCGGTTACCGATCGGACTAAGTTCCAGGTACCTGGACTGGGGCTGGTGCGGGGAGGTTGGATCCCGAGTCGCACAGGTGGCGTGGAGAACTGTGGTTTAAATATGGCCAGGGGACTCGCCTCCTCTTCCTATGGAGAAGGCCCCCGTTCCAAAGATGCCCTTCTCATCCCCATCACGCTGATTCCCTCAAGAACGAGCCCCCAAGGCCAGAGGCGTCTCTTTCTCCA
..................................................((.((......)).))..(((((((((.......))))....))))).........................................................................................................................................................
..................................................51.............................................98.......................................................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		TAX577580(Rovira)
total RNA. (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040011(GSM532896)
G529T. (cervix)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM339994(GSM339994)
hues6. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR191528(GSM715638)
130genomic small RNA (size selected RNA from . (breast)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR040016(GSM532901)
G645N. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR191577(GSM715687)
93genomic small RNA (size selected RNA from t. (breast)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		GSM359193(GSM359193)
HepG2_3pM_7. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM359190(GSM359190)
HepG2_3pM_4. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.............................ACCGATCGGACTAAGTTCC..........................................................................................................................................................................................................19138.0038.0027.007.00-----------------------1.00----------1.00-----1.00----------------------------------1.00-------------------
.............................ACCGATCGGACTAAGTTC...........................................................................................................................................................................................................18119.0019.0014.002.00--------------------------------------1.00------------------1.00-------------------1.00-----------------
.............................ACCGATCGGACTAAGTTCCAGG.......................................................................................................................................................................................................2218.008.001.00--7.00---------------------------------------------------------------------------------------------
........................CGGTTACCGATCGGACTA................................................................................................................................................................................................................1817.007.002.00----------------2.00-1.00--1.00--------1.00-----------------------------------------------------------------
................................................AGGTACCTGGACTGGGG.........................................................................................................................................................................................1717.007.00-1.006.00----------------------------------------------------------------------------------------------
..............................CCGATCGGACTAAGTTCC..........................................................................................................................................................................................................1815.005.003.001.00--------1.00--------------------------------------------------------------------------------------
..........................GTTACCGATCGGACTAAGTT............................................................................................................................................................................................................2015.005.00-----5.00-------------------------------------------------------------------------------------------
............................................................................AGGTTGGATCCCGAGGCC............................................................................................................................................................184.000.00----------------------------1.00------------------------1.00-----------1.00-----------------------1.00-------
................................................AGGTACCTGGACTGGGGC........................................................................................................................................................................................1813.003.00-2.00------------------------------------1.00----------------------------------------------------------
...........................................................................GAGGTTGGATCCCGAGGCC............................................................................................................................................................193.000.00------------------------------------------------------------------1.00------1.00--------1.00--------------
.........................GGTTACCGATCGGACTAAG..............................................................................................................................................................................................................1913.003.00----1.00----------------2.00---------------------------------------------------------------------------
...........................................................................GAGGTTGGATCCCGAGGC.............................................................................................................................................................183.000.00------------------1.00-1.00-------------------------------------------------------------------1.00--------
.............................ACCGATCGGACTAAGTTCCA.........................................................................................................................................................................................................2013.003.002.001.00-----------------------------------------------------------------------------------------------
...........................TTACCGATCGGACTAAGTTCCAG........................................................................................................................................................................................................2313.003.00--------------3.00----------------------------------------------------------------------------------
....................................................ACCTGGACTGGGGCTGGTG...................................................................................................................................................................................1922.002.00------------------------------------------------------1.00-1.00----------------------------------------
............................TACCGATCGGACTAAGTTCCAG........................................................................................................................................................................................................2212.002.002.00------------------------------------------------------------------------------------------------
..............................CCGATCGGACTAAGTTCCAGG.......................................................................................................................................................................................................2112.002.00-2.00-----------------------------------------------------------------------------------------------
.............................................TCCAGGTACCTGGACTGGGGCTGG.....................................................................................................................................................................................2412.002.00----------2.00--------------------------------------------------------------------------------------
......................................................CTGGACTGGGGCTGGTGCGGG...............................................................................................................................................................................2112.002.00----------------------1.00------------------------------------------------------------1.00-------------
......TGTACCCCACGTAGTCGC..................................................................................................................................................................................................................................1812.002.001.001.00-----------------------------------------------------------------------------------------------
...............................................CAGGTACCTGGACTGGGG.........................................................................................................................................................................................1812.002.00--2.00----------------------------------------------------------------------------------------------
............................................................................AGGTTGGATCCCGAGGC.............................................................................................................................................................172.000.00--------------------1.00----------------------1.00-----------------------------------------------------
............................................................................AGGTTGGATCCCGAGG..............................................................................................................................................................162.000.00----------------------------1.00----1.00---------------------------------------------------------------
.........................GGTTACCGATCGGACTAAGTT............................................................................................................................................................................................................2112.002.00--------2.00----------------------------------------------------------------------------------------
................................................AGGTACCTGGACTGGGGCTGG.....................................................................................................................................................................................2112.002.00----1.00--1.00-----------------------------------------------------------------------------------------
.....................CGCCGGTTACCGATCGGA...................................................................................................................................................................................................................1812.002.00--------------------------1.00----------------------------------------1.00-----------------------------
.......................................................................................................................................................................................................................ACGAGCCCCCAAGGCCAGAGGCGTCTCTTTC....3112.002.00------2.00------------------------------------------------------------------------------------------
..................................................GTACCTGGACTGGGGCTGGTG...................................................................................................................................................................................2112.002.00----1.00-------------------------1.00------------------------------------------------------------------
........................CGGTTACCGATCGGACTAA...............................................................................................................................................................................................................1912.002.00------------1.00---------------------------1.00--------------------------------------------------------
.......................................................TGGACTGGGGCTGGTGCGGG...............................................................................................................................................................................2012.002.00----------------------------------2.00--------------------------------------------------------------
..................................................GTACCTGGACTGGGGCTG......................................................................................................................................................................................1812.002.00-----------------------------------------2.00-------------------------------------------------------
...........................................................................GAGGTTGGATCCCGA................................................................................................................................................................1521.501.50------------------0.50-0.50----------------------0.50-----------------------------------------------------
...................................CGGACTAAGTTCCAGGTACCTGGACTGGGGC........................................................................................................................................................................................3111.001.00-1.00-----------------------------------------------------------------------------------------------
...............................CGATCGGACTAAGTTCC..........................................................................................................................................................................................................1711.001.001.00------------------------------------------------------------------------------------------------
...ACCTGTACCCCACGTAGTCGC..................................................................................................................................................................................................................................2111.001.00------------------1.00------------------------------------------------------------------------------
.............................................................GGGGCTGGTGCGGGGAGGTTGG.......................................................................................................................................................................2211.001.00-------------1.00-----------------------------------------------------------------------------------
........................CGGTTACCGATCGGACTAAGTT............................................................................................................................................................................................................2211.001.00---------------------------------------------------1.00---------------------------------------------
............................TACCGATCGGACTAAGTTCC..........................................................................................................................................................................................................2011.001.00------------------------------------------------------------------------------------1.00------------
..............................................CCAGGTACCTGGACTGGGGC........................................................................................................................................................................................2011.001.00------------1.00------------------------------------------------------------------------------------
................................GATCGGACTAAGTTCCTCTG......................................................................................................................................................................................................201.000.00----------------------------------------------------------------------------1.00--------------------
......................................................CTGGACTGGGGCTGGTGCGG................................................................................................................................................................................2011.001.00---------1.00---------------------------------------------------------------------------------------
..............................................................................................................................TGGCCAGGGGACTCGCCTCCCCCC....................................................................................................241.000.00------1.00------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................CAGAGGCGTCTCTTTTTGT.191.000.00---------------------------1.00---------------------------------------------------------------------
.................................................GGTACCTGGACTGGGGCT.......................................................................................................................................................................................1811.001.00---------------------------------------------------------------------------------------1.00---------
...........................TTACCGATCGGACTAAGTTC...........................................................................................................................................................................................................2011.001.00-1.00-----------------------------------------------------------------------------------------------
.................................................................................................AGGTGGCGTGGAGAACTGTGG....................................................................................................................................2111.001.00-------------1.00-----------------------------------------------------------------------------------
....................................................................................................TGGCGTGGAGAACTGTGGTTTAAATATGGC........................................................................................................................3011.001.00-1.00-----------------------------------------------------------------------------------------------
.............CACGTAGTCGCCGGTTACC..........................................................................................................................................................................................................................1911.001.00--------------------------------------------------------------------------------1.00----------------
...................GTCGCCGGTTACCGATCG.....................................................................................................................................................................................................................1811.001.001.00------------------------------------------------------------------------------------------------
.................................................................................................AGGTGGCGTGGAGAATCCC......................................................................................................................................191.000.00--------------------------------------------------------------------------------------1.00----------
....................................................................................................................................................................CCCCGTTCCAAAGATGCCCTTCTC..............................................................2411.001.00-----------------1.00-------------------------------------------------------------------------------
.........ACCCCACGTAGTCGCCGGTTACCGATCGGACTAAGT.............................................................................................................................................................................................................3611.001.00-----------------------------------------------------------------------1.00-------------------------
.................................................GGTACCTGGACTGGGGCTGGTGC..................................................................................................................................................................................2311.001.00-----------------------------------------------------------------------------------------------1.00-
...............................................CAGGTACCTGGACTGGGGCTGGGG...................................................................................................................................................................................241.000.00---------------1.00---------------------------------------------------------------------------------
.....................................................CCTGGACTGGGGCTGGTGCGGGGAG............................................................................................................................................................................2511.001.00---------------------------------------------------------------------1.00---------------------------
.............CACGTAGTCGCCGGTTAC...........................................................................................................................................................................................................................1811.001.00---------------------------------------------------------------------------1.00---------------------
................................................AGGTACCTGGACTGGGGCT.......................................................................................................................................................................................1911.001.00------------------------------------------------------------1.00------------------------------------
................................................AGGTACCTGGACTGGGGCTG......................................................................................................................................................................................2011.001.00------------------------------------------------------------------------1.00------------------------
..........................GTTACCGATCGGACTAAGTTCCAGG.......................................................................................................................................................................................................2511.001.00--------------------------------------1.00----------------------------------------------------------
.......................................................TGGACTGGGGCTGGTGCGGGGAG............................................................................................................................................................................2311.001.00-------------------------------------------------------------------------------------1.00-----------
................................................AGGTACCTGGACTGGG..........................................................................................................................................................................................1621.001.00---------------------------------------1.00---------------------------------------------------------
...............................................CAGGTACCTGGACTGGTGC........................................................................................................................................................................................191.000.00-----------------------------1.00-------------------------------------------------------------------
...........................TTACCGATCGGACTAAGTT............................................................................................................................................................................................................1911.001.00----------------------------------------------------------------------------------------------1.00--
...........................................................................GAGGTTGGATCCCGACGCC............................................................................................................................................................1921.001.50-------------------------------------------------1.00-----------------------------------------------
................................................AGGTACCTGGACTGGGC.........................................................................................................................................................................................1721.001.00-1.00-----------------------------------------------------------------------------------------------
....................................................ACCTGGACTGGGGCTGGTGCGGG...............................................................................................................................................................................2311.001.00-----------1.00-------------------------------------------------------------------------------------
..............................................................................................................................................................................................CCCCATCACGCTGATTGCC.........................................191.000.00-------------------------------------------------------------------------------------------1.00-----
.............CACGTAGTCGCCGGTTACCGATCGGACTAAGTT............................................................................................................................................................................................................3311.001.00--------------------------------------------------------------------------------------------1.00----
...............................................................................................ACAGGTGGCGTGGAGAACT........................................................................................................................................1911.001.00-------------------------------------------------------1.00-----------------------------------------
....................................................ACCTGGACTGGGGCTGGTGCGG................................................................................................................................................................................2211.001.00-------------------------------------1.00-----------------------------------------------------------
.......................................................TGGACTGGGGCTGGTGCG.................................................................................................................................................................................1811.001.00--------------------------1.00----------------------------------------------------------------------
...ACCTGTACCCCACGTAGTCG...................................................................................................................................................................................................................................2011.001.00--------------------------------------------------------------------------1.00----------------------
......................................................CTGGACTGGGGCTGGTGCG.................................................................................................................................................................................1911.001.00---------------------------------------------------------------------------------------------1.00---
.................................................GGTACCTGGACTGGGGC........................................................................................................................................................................................1711.001.00-----------------------------------------------1.00-------------------------------------------------
.......................................................................................................................................................................................................................ACGAGCCCCCAAGGCCAGAGGCGTCCC........271.000.00------1.00------------------------------------------------------------------------------------------
..............................................CCAGGTACCTGGACTGGGGCTGG.....................................................................................................................................................................................2311.001.00-------------1.00-----------------------------------------------------------------------------------
.......................................................................................................CGTGGAGAACTGTGGT...................................................................................................................................1611.001.00---------------------------------------1.00---------------------------------------------------------
......................................................CTGGACTGGGGCTGGTGCGGGGAG............................................................................................................................................................................2411.001.00------------------------------------------------------------------------------1.00------------------
...................GTCGCCGGTTACCGATCGGACTAA...............................................................................................................................................................................................................2411.001.00-----------------------1.00-------------------------------------------------------------------------
......................................................CTGGACTGGGGCTGGTGC..................................................................................................................................................................................1811.001.00------------------------------1.00------------------------------------------------------------------
.........................................AAGTTCCAGGTACCTGGA...............................................................................................................................................................................................1811.001.00---------------------------------------------------------1.00---------------------------------------
......................................................CTGGACTGGGGCTGGTGCGGGG..............................................................................................................................................................................2211.001.00-----------------------1.00-------------------------------------------------------------------------
...................................CGGACTAAGTTCCAGAAGC....................................................................................................................................................................................................191.000.00-----------------------------------1.00-------------------------------------------------------------
...............................CGATCGGACTAAGTTCCAGG.......................................................................................................................................................................................................2011.001.001.00------------------------------------------------------------------------------------------------
........................CGGTTACCGATCGGACTAAGT.............................................................................................................................................................................................................2111.001.00----------------1.00--------------------------------------------------------------------------------
..................................................................................................................GTGGTTTAAATATGGCCAGGGGACTCG.............................................................................................................2711.001.00-------------------------------1.00-----------------------------------------------------------------
...........................................................................GAGGTTGGATCCCGAGAAG............................................................................................................................................................191.000.00--------------------------------------------------1.00----------------------------------------------
..............................................................................................................................TGGCCAGGGGACTCGCCTCCTCCCCC..................................................................................................261.000.00------1.00------------------------------------------------------------------------------------------
........................CGGTTACCGATCGGACTAAGTTCCAGTGG.....................................................................................................................................................................................................291.000.00--------1.00----------------------------------------------------------------------------------------
........................................................................................................GTGGAGAACTGTGGTTTAAATATGGC........................................................................................................................2611.001.001.00------------------------------------------------------------------------------------------------
.............................................................................................................GAACTGTGGTTTAAAGGA...........................................................................................................................181.000.00---------------------------1.00---------------------------------------------------------------------
.................................ATCGGACTAAGTTCCAGG.......................................................................................................................................................................................................1811.001.00----------------------------------------------------------------------1.00--------------------------
......................................................................GCGGGGAGGTTGGATCCCGAGT..............................................................................................................................................................2211.001.00------------------------------------1.00------------------------------------------------------------
..............................CCGATCGGACTAAGTTC...........................................................................................................................................................................................................1711.001.00------------------------------------------1.00------------------------------------------------------
...ACCTGTACCCCACGTAGTC....................................................................................................................................................................................................................................1911.001.00---------------------------------------------------------------1.00---------------------------------
.................................ATCGGACTAAGTTCCAGGTACCTGG................................................................................................................................................................................................2511.001.00----------------------------------------------------------------1.00--------------------------------
......TGTACCCCACGTAGTCGCCGGTT.............................................................................................................................................................................................................................2311.001.00----------------------------------------------------1.00--------------------------------------------
.........................GGTTACCGATCGGACTAA...............................................................................................................................................................................................................1811.001.00-------------------1.00-----------------------------------------------------------------------------
................................GATCGGACTAAGTTCCAGG.......................................................................................................................................................................................................1911.001.00-1.00-----------------------------------------------------------------------------------------------
..............................CCGATCGGACTAAGTTCCAG........................................................................................................................................................................................................2011.001.001.00------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................GGCCAGAGGCGTCTCTTTAGAA.221.000.00-----------1.00-------------------------------------------------------------------------------------
..........................GTTACCGATCGGACTTA...............................................................................................................................................................................................................171.000.00-1.00-----------------------------------------------------------------------------------------------
.....................................................................................CCCGAGTCGCACAGGTGG...................................................................................................................................................1811.001.00-1.00-----------------------------------------------------------------------------------------------
............................................................................AGGTTGGATCCCGAGGCCT...........................................................................................................................................................191.000.00------------------------------------------------------------------------------------------1.00------
......................................................................................................GCGTGGAGAACTGTGGTT..................................................................................................................................1811.001.00--1.00----------------------------------------------------------------------------------------------
...................................CGGACTAAGTTCCAGGTACCTGGA...............................................................................................................................................................................................2411.001.00-----------------------------------1.00-------------------------------------------------------------
.........ACCCCACGTAGTCGCCGGTTA............................................................................................................................................................................................................................2111.001.00-------1.00-----------------------------------------------------------------------------------------
..........................GTTACCGATCGGACTAAGTTC...........................................................................................................................................................................................................2111.001.00-1.00-----------------------------------------------------------------------------------------------
.........................................................................GGGAGGTTGGATCCCGAGTCGC...........................................................................................................................................................2211.001.00---------------1.00---------------------------------------------------------------------------------
..........................................................................................GTCGCACAGGTGGCGTA...............................................................................................................................................171.000.00----------------1.00--------------------------------------------------------------------------------
...........................................................................................................GAGAACTGTGGTTTAAATATG..........................................................................................................................2111.001.00----------------------------------------------1.00--------------------------------------------------
......................................................CTGGACTGGGGCTGGTG...................................................................................................................................................................................1720.500.50-0.50-----------------------------------------------------------------------------------------------
..............................................................GGGCTGGTGCGGGGAGGTT.........................................................................................................................................................................1920.500.50-------------------0.50-----------------------------------------------------------------------------
.......................................CTAAGTTCCAGGTACCTG.................................................................................................................................................................................................1830.330.33-0.33-----------------------------------------------------------------------------------------------
.............................................................................................................................ATGGCCAGGGGACTC..............................................................................................................1590.110.11------------------------------------------------------------------------------------------------0.11

Antisense strand
GGTACCTGTACCCCACGTAGTCGCCGGTTACCGATCGGACTAAGTTCCAGGTACCTGGACTGGGGCTGGTGCGGGGAGGTTGGATCCCGAGTCGCACAGGTGGCGTGGAGAACTGTGGTTTAAATATGGCCAGGGGACTCGCCTCCTCTTCCTATGGAGAAGGCCCCCGTTCCAAAGATGCCCTTCTCATCCCCATCACGCTGATTCCCTCAAGAACGAGCCCCCAAGGCCAGAGGCGTCTCTTTCTCCA
..................................................((.((......)).))..(((((((((.......))))....))))).........................................................................................................................................................
..................................................51.............................................98.......................................................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		TAX577580(Rovira)
total RNA. (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040011(GSM532896)
G529T. (cervix)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM339994(GSM339994)
hues6. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR191528(GSM715638)
130genomic small RNA (size selected RNA from . (breast)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR040016(GSM532901)
G645N. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR191577(GSM715687)
93genomic small RNA (size selected RNA from t. (breast)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		GSM359193(GSM359193)
HepG2_3pM_7. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM359190(GSM359190)
HepG2_3pM_4. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.......................................................................................................................................................................................................................ACGAGCCCCCAAGGCGGGT................ 193.000.00---------2.00----------------------1.00----------------------------------------------------------------
.................ATCGGTAACCGGCGACTA....................................................................................................................................................................................................................... 1812.002.00-------2.00-----------------------------------------------------------------------------------------
.......................TACCTGGAACTTAGTCCGATCGGTAACCGG..................................................................................................................................................................................................... 3011.001.00-------------------------1.00-----------------------------------------------------------------------
.........................ACTTAGTCCGATCGGTAACC............................................................................................................................................................................................................. 2011.001.00---------------------------------------------1.00---------------------------------------------------
.............................TGGAACTTAGTCCGATCGGT......................................................................................................................................................................................................... 2011.001.00---------------------------------------------------------------------------------1.00---------------
..................................................................................................................................................................................CGTGATGGGGATGAGAAGGGCA.................................................. 2211.001.00-------------------------------------1.00-----------------------------------------------------------
......................................................................................................TAAACCACAGTTCTCCACGC................................................................................................................................ 2011.001.00--------------------------------------------------------------1.00----------------------------------
...................................................................................................................................................................................................................AAGAACGAGCCCCCAAA...................... 171.000.00-----------------------------1.00-------------------------------------------------------------------
......................ACCTGGAACTTAGTCCGATCGGTAACCGGC...................................................................................................................................................................................................... 3011.001.00---------------------------------1.00---------------------------------------------------------------
................................................................................................................CCCTGGCCATATTTAAACCACAG................................................................................................................... 2311.001.00-----------1.00-------------------------------------------------------------------------------------
.......................................................................................................................................................................GGGATGAGAAGGGCATCTTTGGAACG......................................................... 2611.001.00----1.00--------------------------------------------------------------------------------------------
...........................................................................................................................................................................................GAGGGAATCAGCGTGATGGGGATG....................................... 2411.001.00----------------------------------------------------------1.00--------------------------------------
......................................................................................................................................................................AAGGGCATCTTTGGAACGG................................................................. 1911.001.00------------------------1.00------------------------------------------------------------------------
..................................................................................................................................................................................................ATCACGCTGATTCCCTCAA..................................... 191.000.00-------------------------------------------------------------1.00-----------------------------------
....................................................................................GCCACCTGTGCGACTCGGGA.................................................................................................................................................. 2011.001.00--------------------------------------------------------------------1.00----------------------------
.......................................................................................................................................................................ATGAGAAGGGCATCTTTGGAACG............................................................ 2311.001.00----1.00--------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................GAGAAAGAGACGCCTCTGGC.. 2011.001.00----1.00--------------------------------------------------------------------------------------------
.....................TCCGATCGGTAACCGGCG................................................................................................................................................................................................................... 1811.001.001.00------------------------------------------------------------------------------------------------
......................................................................................................................................................................GAAGGGCATCTTTGGAACGG................................................................ 2011.001.00----1.00--------------------------------------------------------------------------------------------
.......................................................................................................................................................................................TTCTCATCCCCATCACGCTGAA............................................. 221.000.00------------1.00------------------------------------------------------------------------------------
..................................................................................GCCACCTGTGCGACTCGGGATC.................................................................................................................................................. 2211.001.00---------------1.00---------------------------------------------------------------------------------
......................................................................................................................................................................................................................AACGAGCCCCCAAGGCGGTA................ 201.000.00--------------------------------1.00----------------------------------------------------------------
......................GTCCGATCGGTAACCGGC.................................................................................................................................................................................................................. 1811.001.001.00------------------------------------------------------------------------------------------------
....................................................................................................................................................................................AGCGTGATGGGGATGAGAAGGG................................................ 2211.001.00------------------------------------------------1.00------------------------------------------------
.......................................................................................................................................................................................................................ACGAGCCCCCAAGGCGGG................. 181.000.00----------------1.00--------------------------------------------------------------------------------
....................................................................................................................................................................................CCCTTCTCATCCCCATATA................................................... 191.000.00--------------------------------------------1.00----------------------------------------------------
.................................................................................................................................................................................GCGTGATGGGGATGAGAAGGGCAT................................................. 2411.001.00------------------------1.00------------------------------------------------------------------------
.....................................................................................................................................................................................................TGAGGGAATCAGCGT...................................... 1530.330.33--------------------------------------------0.33----------------------------------------------------
................................................................CCTCCCCGCACCAGC........................................................................................................................................................................... 1590.110.11---------------------------------------------0.11---------------------------------------------------