ID: uc002riy.1_intron_7_0_chr2_27356523_r.3p
GENE: PREB(1)
chr2:27356473-27356722-


(1)
AGO1.ip OTHER.mut
(1)
AGO2.ip
(7)
B-CELL
(3)
BRAIN
(21)
BREAST
(39)
CELL-LINE
(9)
CERVIX
(2)
FIBROBLAST
(4)
HEART
(1)
HELA
(8)
LIVER
(2)
OTHER
(35)
SKIN
(1)
TESTES
(1)
UTERUS

Sense strand
GAGAGAAAAAAGACTCGAGAAACCCTTGTGAACTAGAACGTGCAGAAAGCAAAGGGGTAAGACATCAGACTCTTCCCTAAACGTGCTCTCTGGGCACCCCTGAACTTGCTCATCCGGGTTCCCCCTCCCACAGCACTTTCTGCAGCTAGAGCTGATTAATGGGCGCTTGAGTGCCTCCTTGCTGCACTCCCATGACACAGAGACACGGGCCACCATGAACTTGGCACTGGCTGGTGACATCCTTGCTGCA
...........................................................................................(((.((((.(((......)))...)))).)))...............................................................................................................................
...................................................................................84...............................................133...................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040042(GSM532927)
G428N. (cervix)
SRR189782SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR040043(GSM532928)
G428T. (cervix)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR189784SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532880(GSM532880)
G659T. (cervix)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189787SRR040028(GSM532913)
G026N. (cervix)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR029129(GSM416758)
SW480. (cell line)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR191467(GSM715577)
115genomic small RNA (size selected RNA from . (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189785SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR191450(GSM715560)
145genomic small RNA (size selected RNA from . (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)
SRR037938(GSM510476)
293Red. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR040006(GSM532891)
G601N. (cervix)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR343335SRR029130(GSM416759)
DLD2. (cell line)
SRR038857(GSM458540)
D20. (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR040024(GSM532909)
G613N. (cervix)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191497(GSM715607)
17genomic small RNA (size selected RNA from t. (breast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR029125(GSM416754)
U2OS. (cell line)
GSM532872(GSM532872)
G652T. (cervix)
SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)
GSM532876(GSM532876)
G547T. (cervix)
GSM416733(GSM416733)
HEK293. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)
SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR029127(GSM416756)
A549. (cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
TAX577742(Rovira)
total RNA. (breast)
SRR191505(GSM715615)
139genomic small RNA (size selected RNA from . (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR191571(GSM715681)
63genomic small RNA (size selected RNA from t. (breast)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
...............................................................................................................ATCCGGGTTCCCCCTCCA.........................................................................................................................181126.007.0034.0013.009.00-5.005.00--1.004.003.003.00-1.002.00-2.001.002.00-2.00-2.00-1.00-1.001.001.001.00-1.00--1.00--2.00----1.00-----1.00---1.001.001.001.00--1.00-1.001.001.00-1.001.00-1.001.001.00-1.001.001.00---1.001.00-------1.00--1.001.00---1.001.00-----1.00-1.00-1.00---------------------------------
................................................................................................................TCCGGGTTCCCCCTCCA.........................................................................................................................17315.331.33------1.00-0.33-------0.330.330.330.33-----1.00-------------1.330.33--0.331.33-0.33-----------------------------------------------------------0.670.67--0.670.33-0.330.330.330.330.330.330.330.330.33-0.330.330.33---0.330.330.330.330.33-----
...............................................................................................................ATCCGGGTTCCCCCTCC..........................................................................................................................1717.007.00---1.00---2.001.00-----------------------------------------1.00----------------------------------1.00-----------1.00-----------------------------------------
................................................................................................................TCCGGGTTCCCCCTCCC.........................................................................................................................1714.004.00-------------------1.00------1.00--1.00----1.00--------------------------------------------------------------------------------------------------------
...............................................................................................................ATCCGGGTTCCCCCTCCC.........................................................................................................................1814.004.00----------1.00--------1.00------------------------------------------------------1.00------1.00---------------------------------------------------------
..............................................................................................................CATCCGGGTTCCCCCTCCA.........................................................................................................................193.000.00---------------------------------1.00-------------1.00-1.00-----------------------------------------------------------------------------------------
.............................................................................................................TCATCCGGGTTCCCCCTCCA.........................................................................................................................203.000.00----1.00---1.00------------------------1.00---------------------------------------------------------------------------------------------------------
..........................TGTGAACTAGAACGTGCAGAAAGCAAAG....................................................................................................................................................................................................2812.002.00---------------------------------------------------1.00-----------------------------------------1.00---------------------------------------------
...................................................................................................................................................................................................CACAGAGACACGGGCCACCATT.................................222.000.00------------------------------------2.00------------------------------------------------------------------------------------------------------
................................................................................................................TCCGGGTTCCCCCTCCATT.......................................................................................................................1932.001.330.33--0.67----------------------------------------------------------------------------------------------------1.00----------------------------------
...............................................................................................................ATCCGGGTTCCCCCTCCT.........................................................................................................................1812.007.00----------------------------------------------------------------------1.00---------------------1.00----------------------------------------------
...............................................................................................................ATCCGGGTTCCCCCTCCAAA.......................................................................................................................2012.007.00--------------1.00---------------------------------------------------------------------------------1.00------------------------------------------
...........................GTGAACTAGAACGTGCAGAAAGCA.......................................................................................................................................................................................................2412.002.00-----------------------1.00--------------------------------------------------------1.00----------------------------------------------------------
...............................................................................................................ATCCGGGTTCCCCCTTCA.........................................................................................................................182.000.00---------------------------1.001.00--------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................ATGACACAGAGACACGGGCCACCATGAACTTGGC.........................3412.002.00---------------------2.00---------------------------------------------------------------------------------------------------------------------
...............................................................................................................ATCCGGGTTCCCCCTCCATTT......................................................................................................................2112.007.00---2.00---------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................CCGGGTTCCCCCTCCA.........................................................................................................................1662.000.67----------------0.170.17--0.17------------------0.17-------0.170.17--------------------------------------------------------------0.17----------0.33-----------0.17--0.170.17
...............................................................................................................ATCCGGGTTCCCCCTCAA.........................................................................................................................182.000.002.00------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................TCCGGGTTCCCCCTCC..........................................................................................................................1631.331.33-------0.67---------------------------------0.33----------------------------------------------------------------------0.33--------------------------
...............................................................................................................ATCCGGGTTCCCCCTCAAAA.......................................................................................................................201.000.00------------------------1.00------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................GCTGCACTCCCATGACACAGAGACACGGG.........................................2911.001.00-----------------------------------------1.00-------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................AACTTGGCACTGGCTGGT...............1811.001.00-----------------1.00-------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................CTCCCATGACACAGAGACACGGG.........................................2311.001.00-------------------------------------------------------------------------------1.00-----------------------------------------------------------
................................................................................................................................................................................................TGACACAGAGACACGGGCCACCA...................................2311.001.00------------------------------------------------------------------------------------1.00------------------------------------------------------
...............................................................................................................ATCCGGGTTCCCCCTGCA.........................................................................................................................181.000.00--1.00----------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TGACACAGAGACACGGGCCACCATGAA...............................2711.001.00---------------1.00---------------------------------------------------------------------------------------------------------------------------
...............................................................................................................ATCCGGGTTCCCCCTCCAA........................................................................................................................1911.007.00---1.00---------------------------------------------------------------------------------------------------------------------------------------
...............................................AGCAAAGGGGTAAGACATCA.......................................................................................................................................................................................2011.001.00--------------------------------1.00----------------------------------------------------------------------------------------------------------
..............................................................................................................CATCCGGGTTCCCCCTCTTT........................................................................................................................201.000.00-----------------------------------------------------------------------------------1.00-------------------------------------------------------
..............................................................................................................................................................................................CATGACACAGAGACACGG..........................................1811.001.00-------------1.00-----------------------------------------------------------------------------------------------------------------------------
...............................................................................................................ATCCGGGTTCCCCCTCCAAAA......................................................................................................................2111.007.00-------------------------------1.00-----------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TGACACAGAGACACGGGCCACC....................................2211.001.00---------------1.00---------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................ATGAACTTGGCACTGGC...................1711.001.00----------------------------------------------------------------------------------------1.00--------------------------------------------------
...AGAAAAAAGACTCGAGAAAC...................................................................................................................................................................................................................................2011.001.00--------------------------------------------------------1.00----------------------------------------------------------------------------------
.........................................................................................................................CCCCTCCCACAGCACGACC..............................................................................................................191.000.00-------------1.00-----------------------------------------------------------------------------------------------------------------------------
...............................................................................................................ATCCGGGTTCCCCCTCCAAG.......................................................................................................................2011.007.00---1.00---------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................GCACCCCTGAACTTGCTCAT.........................................................................................................................................2011.001.00----------------------------------------------------------------------------------------------------1.00--------------------------------------
.......................................................................................................................................................................................................GAGACACGGGCCACCATA.................................181.000.00--------------------------------------1.00----------------------------------------------------------------------------------------------------
...............................................................................................................ATCCGGGTTCCCCCTCCAT........................................................................................................................1911.007.00---------------------------------------------------------------------------------------------------1.00---------------------------------------
................................................................................................................................................................................................TGACACAGAGACACGGGCCACCAC..................................2411.001.00------------------------------1.00------------------------------------------------------------------------------------------------------------
................................................................................................................TCCGGGTTCCCCCTCCCA........................................................................................................................1811.001.00------------1.00------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................ATCCGGGTTCCCCCTCCTTC.......................................................................................................................2011.007.00---1.00---------------------------------------------------------------------------------------------------------------------------------------
........................................................................................TCTGGGCACCCCTGAACTTTGG............................................................................................................................................221.000.00-----------------------------------------------------------1.00-------------------------------------------------------------------------------
.........AAGACTCGAGAAACCCTTGTGAACTAGAACG..................................................................................................................................................................................................................3111.001.00-------------------------1.00-----------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................ATGAACTTGGCACTGGCT..................1811.001.00-------------------------------------------1.00-----------------------------------------------------------------------------------------------
...............................................................................................................ATCCGGGTTCCCCCTACA.........................................................................................................................181.000.00---------------------------------------------------------------------------------------1.00---------------------------------------------------
................................................................................................................TCCGGGTTCCCCCTCT..........................................................................................................................161.000.00---------------------------------------------------------------1.00---------------------------------------------------------------------------
......................................................................................................................................................................................................AGAGACACGGGCCACCATGAACTTG...........................2511.001.00-------1.00-----------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................ATCCGGGTTCCCCCTCCAATT......................................................................................................................2111.007.00--------------------------------------------------------------------------------------------------1.00----------------------------------------
...............................................................................................................ATCCGGGTTCCCCCTCCACT.......................................................................................................................2011.007.00------------1.00------------------------------------------------------------------------------------------------------------------------------
................................................................................................................TCCGGGTTCCCCCTCCAT........................................................................................................................1831.001.33-------0.330.33-----------------------------------------------------------------------------------------------------------------------0.33----------
.................................................................................................................................................................................................GACACAGAGACACGGGCCACCAT..................................2311.001.00--------------------------------------1.00----------------------------------------------------------------------------------------------------
...............................................................................................................ATCCGGGTTCCCCCTCCATG.......................................................................................................................2011.007.00---1.00---------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................CACTCCCATGACACAGAGACACG...........................................2311.001.00----------------------------------------------1.00--------------------------------------------------------------------------------------------
............................TGAACTAGAACGTGCAGAA...........................................................................................................................................................................................................1911.001.00--------------------------------1.00----------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................AGTGCCTCCTTGCTGCACTCCCACGAC......................................................271.000.00---------------------------------------------------------------------------1.00---------------------------------------------------------------
.....................................................................................................................................................................................................CAGAGACACGGGCCACCAT..................................1911.001.00---------------------------------------------------------1.00---------------------------------------------------------------------------------
..........................................................................................................................................................................................................ACACGGGCCACCATGACGTC............................201.000.00------------------------------1.00------------------------------------------------------------------------------------------------------------
.................................................................................................................................ACAGCACTTTCTGCAGC........................................................................................................1711.001.00----------------------------------------------------------------------------1.00--------------------------------------------------------------
................................................................................................................TCCGGGTTCCCCCTCTA.........................................................................................................................171.000.00-------------------------------------------------------------------------------------------1.00-----------------------------------------------
....................................................................................................................................................................................................ACAGAGACACGGGCCACCATGAACT.............................2511.001.00---------------------------------------------1.00---------------------------------------------------------------------------------------------
....................................................................................................................................................................................GCTGCACTCCCATGACACAGAGACAC............................................2611.001.00------------------------------------------------------------------1.00------------------------------------------------------------------------
.......................................................................................................................................................................................................GAGACACGGGCCACCATG.................................1811.001.00---------------1.00---------------------------------------------------------------------------------------------------------------------------
................................................................................................................TCCGGGTTCCCCCTCCATC.......................................................................................................................1930.671.33------------------------------------------------------------------------------------------------------------0.330.33-----------------------------
................................................................................................................TCCGGGTTCCCCCTCCAAA.......................................................................................................................1930.671.33------------------------------------------------------------------------------------------------------------0.330.33-----------------------------
................................................................................................................TCCGGGTTCCCCCTCCAAT.......................................................................................................................1930.671.33---0.33--0.33------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................CCGGGTTCCCCCTCC..........................................................................................................................1560.670.67----------------------------------------------------------------------------------------------------------------0.170.17---------------------0.170.17--
................................................................................................................TCCGGGTTCCCCCTCCTAT.......................................................................................................................1930.331.33---0.33---------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TGACACAGAGACACGG..........................................1630.330.33---------------------------------------------0.33---------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................TGAACTTGGCACTGGC...................1630.330.33------------------------------------------0.33------------------------------------------------------------------------------------------------
................................................................................................................TCCGGGTTCCCCCTCCAGA.......................................................................................................................1930.331.33-----------0.33-------------------------------------------------------------------------------------------------------------------------------
................................................................................................................TCCGGGTTCCCCCTCCGA........................................................................................................................1830.331.33-------------------------------------------------------------------------------------------------------------------------------0.33-----------
................................................................................................................TCCGGGTTCCCCCTCCATA.......................................................................................................................1930.331.33------------------------------------------------------------------------------------------------------------------------------0.33------------
................................................................................................................TCCGGGTTCCCCCTCCATTT......................................................................................................................2030.331.33--------0.33----------------------------------------------------------------------------------------------------------------------------------

Antisense strand
GAGAGAAAAAAGACTCGAGAAACCCTTGTGAACTAGAACGTGCAGAAAGCAAAGGGGTAAGACATCAGACTCTTCCCTAAACGTGCTCTCTGGGCACCCCTGAACTTGCTCATCCGGGTTCCCCCTCCCACAGCACTTTCTGCAGCTAGAGCTGATTAATGGGCGCTTGAGTGCCTCCTTGCTGCACTCCCATGACACAGAGACACGGGCCACCATGAACTTGGCACTGGCTGGTGACATCCTTGCTGCA
...........................................................................................(((.((((.(((......)))...)))).)))...............................................................................................................................
...................................................................................84...............................................133...................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040042(GSM532927)
G428N. (cervix)
SRR189782SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR040043(GSM532928)
G428T. (cervix)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR189784SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532880(GSM532880)
G659T. (cervix)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189787SRR040028(GSM532913)
G026N. (cervix)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR029129(GSM416758)
SW480. (cell line)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR191467(GSM715577)
115genomic small RNA (size selected RNA from . (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189785SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR191450(GSM715560)
145genomic small RNA (size selected RNA from . (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)
SRR037938(GSM510476)
293Red. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR040006(GSM532891)
G601N. (cervix)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR343335SRR029130(GSM416759)
DLD2. (cell line)
SRR038857(GSM458540)
D20. (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR040024(GSM532909)
G613N. (cervix)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191497(GSM715607)
17genomic small RNA (size selected RNA from t. (breast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR029125(GSM416754)
U2OS. (cell line)
GSM532872(GSM532872)
G652T. (cervix)
SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)
GSM532876(GSM532876)
G547T. (cervix)
GSM416733(GSM416733)
HEK293. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)
SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR029127(GSM416756)
A549. (cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
TAX577742(Rovira)
total RNA. (breast)
SRR191505(GSM715615)
139genomic small RNA (size selected RNA from . (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR191571(GSM715681)
63genomic small RNA (size selected RNA from t. (breast)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
.........................................................................................................................AAGTGCTGTGGGAGGGG................................................................................................................ 1733.333.33------3.33------------------------------------------------------------------------------------------------------------------------------------
...................AAACCCTTGTGAACTGT...................................................................................................................................................................................................................... 171.000.00----------------------------------------------------------------------------------1.00--------------------------------------------------------
..........................................................................................................................CCCTCCCACAGCACTTG............................................................................................................... 171.000.00-----------------------------------1.00-------------------------------------------------------------------------------------------------------
............................................................................................................................CTCCCACAGCACTTTCTTC........................................................................................................... 191.000.00------------1.00------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................CCCTCCCACAGCACTTGT.............................................................................................................. 181.000.00-----------------------------------1.00-------------------------------------------------------------------------------------------------------
...........................................................TTTAGGGAAGAGTCTGATGTCT......................................................................................................................................................................... 2211.001.00----------------------------------------1.00--------------------------------------------------------------------------------------------------
.........................................................................TCCCTAAACGTGCTCTCCCG............................................................................................................................................................. 201.000.00------------------------------------------------------------------------------------------------------1.00------------------------------------
.............................................................................................................TCATCCGGGTTCCCCAGAA.......................................................................................................................... 191.000.00-----------------------1.00-------------------------------------------------------------------------------------------------------------------
......................................................................TCTTCCCTAAACGTGAAA.................................................................................................................................................................. 181.000.001.00------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................AGTGCAGCAAGGAGGC.............................................................. 1670.140.14-------------------------------------------------0.14-----------------------------------------------------------------------------------------