ID: uc002rgb.2_intron_9_0_chr2_25467522_r.5p
GENE: (9)
chr2:25467922-25468171-


(1)
AGO2.ip 		(1)
B-CELL 		(6)
BREAST 		(34)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(4)
HEART 		(13)
HELA 		(3)
LIVER 		(1)
OTHER 		(29)
SKIN 		(1)
XRN.ip

Sense strand
TTACCCTGGAACACCCCCTCTTCGTTGGAGGAATGTGCCAAAACTGCAAGGTAGGAGCACACCCACCCAGGAGAGGTGCCGTTGAGGCCGGCCCTTCGGCCTTCTGGCTGACTGTGTCCACCGCTTCTGGGCATGTACAGGGTGACACCCGGTGTGCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGATGACACGGGCCCTTGGGTTTCAAGCTTTTGACTTGCTCTCATTTTTCTC
.............................................................................................................................................................((((.((...(((((....((((((...)))))).)))))...)).))))...........................................
......................................................................................................................................................151.....................................................207.........................................
SizePerfect hitTotal NormPerfect NormDRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM359192(GSM359192)
HepG2_3pM_6. (cell line)		GSM359193(GSM359193)
HepG2_3pM_7. (cell line)		GSM359190(GSM359190)
HepG2_3pM_4. (cell line)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		GSM359202(GSM359202)
hepg2_untreated_a. (cell line)		GSM359211(GSM359211)
hepg2_biotin_hl_2a. (cell line)		GSM359212(GSM359212)
hepg2_biotin_hl_2b. (cell line)		GSM359205(GSM359205)
HepG2_nucl_up. (cell line)		GSM359173(GSM359173)
hela_10_1. (hela)		GSM359187(GSM359187)
HepG2_2pM_1. (cell line)		GSM359186(GSM359186)
hepg2_untrtd. (cell line)		GSM359204(GSM359204)
HepG2_nucl_low. (cell line)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM359210(GSM359210)
hepg2_biotin_el_hl_b. (cell line)		GSM359188(GSM359188)
HepG2_2pM_2. (cell line)		GSM359209(GSM359209)
hepg2_biotin_el_hl_a. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189783GSM359175(GSM359175)
hela_5_pct. (hela)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359178(GSM359178)
hela_nucl_t. (hela)		GSM359194(GSM359194)
HepG2_TAP_AFFY_depl. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359207(GSM359207)
HepG2_tot_up. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM359206(GSM359206)
HepG2_tot_low. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359200(GSM359200)
hepg2_tap_pasr_a. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		GSM359201(GSM359201)
hepg2_tap_pasr_b. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR191442(GSM715552)
107genomic small RNA (size selected RNA from . (breast)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		GSM359185(GSM359185)
hepg2_tap_pasr. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)		SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359198(GSM359198)
hepg2_cip_tap_pasr_a. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGATG...............................................4814612.004612.002320.001609.00407.00185.00--76.00-------15.00-------------------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGATG...............................................4912440.002440.001412.00777.00146.0073.00--29.00-------3.00-------------------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAGAGCTTCCT...................................................................291293.00293.00-----128.00---24.0022.0022.0022.0017.00-18.0010.008.008.00--4.00-----2.002.002.00-------1.00------------------1.00-----1.00---------------------1.00---------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGA..........................................................................211153.00153.00----147.00--4.002.00-------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGAT................................................47175.0075.0046.0011.0010.007.00--1.00---------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGATGA..............................................49168.0068.0050.0015.00-3.00------------------------------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGATGA..............................................50164.0064.0048.0011.005.00-------------------------------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAGA..........................................................................22164.0064.00----61.00---------------------------------1.00----------------------------------------------1.00--1.00-----
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCT...................................................................28156.0056.00-----29.00----1.002.001.001.00--4.00--5.00-1.00-4.00---1.001.00--------2.00---------2.00----2.00-----------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGATGACA............................................52141.0041.0024.002.009.005.00--1.00---------------------------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGATGAC.............................................51138.0038.0028.003.005.002.00------------------------------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGAT................................................48137.0037.0027.007.002.001.00------------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGATGACA............................................51134.0034.0019.001.0013.001.00------------------------------------------------------------------------------------------
............................................................................................................................................................CGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGATG...............................................47128.0028.0012.009.003.002.00--1.00-------1.00-------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCATA..........................................................................2128.000.00----28.00-----------------------------------------------------------------------------------------
.......................................................................................................................................................................................CTGGAAGCAGAGTCCTGATG...............................................20128.0028.00----------------------------------2.002.00--1.003.001.002.00------2.001.002.00--2.00-1.00---1.00-------1.00----------1.001.001.001.00-1.00---1.00---1.00--
...........................................................................................................................................................GCGTGTGATGTAGACT...............................................................................16126.0026.00-------23.003.00-------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTC.....................................................................26125.0025.00-----1.00-6.003.00-----------5.00---3.00-------2.00---3.00-------2.00-------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGATGAC.............................................50123.0023.0013.005.004.00---1.00---------------------------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAGAGCTT......................................................................26122.0022.00---------3.003.002.00-4.00------1.001.005.00-1.00-------1.00-----------------------------------------1.00-------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAG...........................................................................21115.0015.00----1.00--7.007.00-------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTC.............................................................................18114.0014.00--1.00----5.005.00------------------------------------1.00--------1.00-----------------1.00---------------------
..........................................................................................................................................................TGCGTGTGATGTAGACT...............................................................................17114.0014.00-------7.002.00-----------------1.00-------1.00-----------------------1.00------------------1.00--------1.00-------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGCTG...............................................4814.000.002.0012.00--------------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGATGACACGGGCCCTTGGGTTTCAAGCTTTTG...................76112.0012.003.00--9.00------------------------------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGAC................................................................................16111.0011.00-------4.006.00------------------------------------------------------1.00------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTC.............................................................................19110.0010.00-------2.006.00-------------------------------------1.00----1.00------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCATA..........................................................................229.000.00----9.00-----------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGATGAAA............................................5117.0068.003.001.003.00-------------------------------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGATGAAA............................................5217.0064.006.001.00--------------------------------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAGAGCTTC.....................................................................2716.006.00-----2.00-1.002.00--------------------1.00----------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTT..............................................................................1816.006.00--------6.00-------------------------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGATGAA.............................................5115.0064.005.00---------------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGATA...............................................4815.0075.004.001.00--------------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGTTG...............................................485.000.00-5.00--------------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAA.........................................................................2214.00153.00----4.00-----------------------------------------------------------------------------------------
........................................................................................................................................................................................TGGAAGCAGAGTCCTGATG...............................................1914.004.00----------------------------------------1.00--1.00-----1.00--------------------------------1.00-----------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGACG...............................................4814.002.001.003.00--------------------------------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTAATG...............................................494.000.00-4.00--------------------------------------------------------------------------------------------
..................TCTTCGTTGGAGGAATGTGCCAAA................................................................................................................................................................................................................2413.003.00---------------------------------3.00------------------------------------------------------------
.............................................................................................................................................................GTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGATG...............................................4613.003.001.002.00--------------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTT......................................................................2513.003.00---------1.00---------1.00---1.00----------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAGAGCTTCCTCTGG...............................................................3313.003.00-------------------------1.00------------1.00------------1.00------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGTTTC.....................................................................263.000.00-------1.002.00-------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGATGAAAAA..........................................5313.0068.001.001.00-1.00------------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGGTG...............................................483.000.00-3.00--------------------------------------------------------------------------------------------
.................................................................................................................................................................................CTTCCTCTGGAAGCAGAGTCCTGATG...............................................2613.003.00-----1.00-2.00--------------------------------------------------------------------------------------
.............................................................................................................................................................GTGTGATGTAGACTTCAGA..........................................................................1913.003.00----3.00-----------------------------------------------------------------------------------------
.........................................................................................................................................................................CTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGATG...............................................3413.003.00-----1.00-------------------------2.00--------------------------------------------------------------
......................................................................................................................................................................................TCTGGAAGCAGAGTCCTGATG...............................................2113.003.00----1.00----------------------------------------------------------------------1.00-----------------1.00
..........................................................................................................................................................TGCGTGTGATGTAGA.................................................................................1512.002.00-------1.00--------------------------------------------------------------1.00-----------------------
..................................................................................................................................................................................TTCCTCTGGAAGCAGAGTCCTGATG...............................................2512.002.00--------1.00----------------------------------------------------1.00--------------------------------
..............................................................................................................................................................TGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGATG...............................................4512.002.001.001.00--------------------------------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAGAG.........................................................................2312.002.00-------2.00--------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGG...............................................................3212.002.00--------------------------2.00-------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGC........................................................................2312.002.00--------1.00----------------1.00--------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAG...........................................................................2012.002.00----1.00-----------------------------------------------------------1.00-----------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCT...................................................4412.002.002.00---------------------------------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTCATG...............................................492.000.00-2.00--------------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAAGA.......................................................................2412.00153.00----2.00-----------------------------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAGAGC........................................................................2412.002.00--------1.00----------------1.00--------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCACA..........................................................................212.000.00-------1.001.00-------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGA.................................................4612.002.001.00--1.00------------------------------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGA.................................................4712.002.001.00--1.00------------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGATGACG............................................5112.0023.002.00---------------------------------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAGAGCTTCCTC..................................................................3012.002.00-----1.00---------------------------------------------------1.00------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTAATG...............................................4812.002.001.001.00--------------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGAC................................................................................1521.501.50--------1.00-------------------------------0.50-----------------------------------------------------
......................................................................................................................................................GGTGTGCGTGTGATGTAGACTTCAGAG.........................................................................2711.001.00------------------------------------------1.00---------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTT..............................................................................1711.001.00-------1.00--------------------------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAGAGCTTCCTCTGGA..............................................................3411.001.00-------1.00--------------------------------------------------------------------------------------
.............................................................................................................................................................GTGTGATGTAGACTTCAGAGCT.......................................................................2211.001.00-----------------------------------------------------------------1.00----------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCCGAC................................................481.000.00-1.00--------------------------------------------------------------------------------------------
...........................................................................................................................................................................TCAGAGCTTCCTCTGGAAGCAGAGTCCTGATG...............................................3211.001.00--------1.00-------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................GCTCTCATTTTTCTCTTTG191.000.00--------------------------------------------------------------------------------------------1.00-
...........................................................................................................................................................GCGTGTGATGTAGACTTCATGAC........................................................................231.000.00--------1.00-------------------------------------------------------------------------------------
....................................................................................................................................................................GTAGACTTCAGAGCTCTG....................................................................181.000.00------------------------------1.00---------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCGTC.....................................................................2611.002.00--------1.00-------------------------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGGTC...............................................491.000.001.00---------------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTCATG...............................................4811.002.001.00---------------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTCGCG...............................................4811.002.001.00---------------------------------------------------------------------------------------------
.......................................................................................................................................................................................CTGGAAGCAGAGTCCTGATGACA............................................2311.001.00---------------------------------------------1.00------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGA..............................................................3311.001.00-------1.00--------------------------------------------------------------------------------------
..................TCTTCGTTGGAGGAATGTGCC...................................................................................................................................................................................................................2111.001.00------------------------------------------1.00---------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAA.............................................................3511.001.00-------1.00--------------------------------------------------------------------------------------
............................................................................................................................................................CGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGATGAC.............................................4911.001.00-1.00--------------------------------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTGAG...........................................................................2111.006.00----1.00-----------------------------------------------------------------------------------------
..............................................................................................................................................................................GAGCTTCCTCTGGAAGCAGAGTCCTGATG...............................................2911.001.00--------1.00-------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAAA........................................................................2311.00153.00----1.00-----------------------------------------------------------------------------------------
.......................................................................................................................................................................................CTGGAAGCAGAGTCCTGATGACACGGGAA......................................291.000.00-------------------------------------------1.00--------------------------------------------------
.......................GTTGGAGGAATGTGCCAAAACTGC...........................................................................................................................................................................................................2411.001.00------------------------------------------------------------1.00---------------------------------
.............................................................................................................................................................GTGTGATGTAGACTTC.............................................................................1611.001.00--------1.00-------------------------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGACG...............................................4911.002.00--1.00-------------------------------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTCCAG...........................................................................2111.0014.00--------1.00-------------------------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCTGA..........................................................................2211.0010.00----1.00-----------------------------------------------------------------------------------------
............................................................................................................................................GGTGACACCCGGTGTGCGTGTGA.......................................................................................2311.001.00------------------------------------------------------------------------------------------1.00---
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGATGAA.............................................5011.0068.001.00---------------------------------------------------------------------------------------------
.................................TGTGCCAAAACTGCAAGGTAGGAGAC...............................................................................................................................................................................................261.000.00-----------------------------------------------------------------------------------------1.00----
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCGATG................................................471.000.00-1.00--------------------------------------------------------------------------------------------
.........................................................................................................................................................................................GGAAGCAGAGTCCTGATG...............................................1811.001.00-----------------------------------------------------------------------1.00----------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCT.......................................................................2411.001.00-------------------------------------------------------------------------1.00--------------------
.........................................................CACACCCACCCAGGAACA...............................................................................................................................................................................181.000.00----------------------------------------------1.00-----------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACGT..............................................................................1721.001.50--------1.00-------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGATGACACGGGCCCTTGG.................................6211.001.00------1.00---------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGT......................................................4111.001.001.00---------------------------------------------------------------------------------------------
............................AGGAATGTGCCAAAATTT............................................................................................................................................................................................................181.000.00--------------------------------------------------------------------1.00-------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGCGG...............................................481.000.00-1.00--------------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTA.....................................................................2611.003.00--------1.00-------------------------------------------------------------------------------------
......................................................................................................................................................................................TCTGGAAGCAGAGTCCTGA.................................................1911.001.00---------------------------------------------------------------------1.00------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCC....................................................................2711.001.00--------1.00-------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGATT...............................................4811.0075.00-1.00--------------------------------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGCTG...............................................491.000.00-1.00--------------------------------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAGAA.........................................................................2311.0064.00----1.00-----------------------------------------------------------------------------------------
...........................GAGGAATGTGCCAAAACTGCAAG........................................................................................................................................................................................................2311.001.00----------------------------------------------------------------------------1.00-----------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGTTG...............................................491.000.00-1.00--------------------------------------------------------------------------------------------
...............................................................................................................................................................GTGATGTAGACTTCAGAGCTTCCT...................................................................2411.001.00-------------------1.00--------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGG..........................................................................2111.002.00--------1.00-------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGCTT...............................................481.000.00-1.00--------------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGATGAAAA...........................................5211.0068.00-1.00--------------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAAC........................................................................2311.00153.00--------1.00-------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCCGAT................................................471.000.00---1.00------------------------------------------------------------------------------------------
.......................................................................................................................................................................................CTGGAAGCAGAGTCCTGATGAGAA...........................................241.000.00-----------------------------------1.00----------------------------------------------------------
...............................................................................................................................................................GTGATGTAGACTTCAGAGCTT......................................................................2111.001.00------------------------------1.00---------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAT.........................................................................2211.00153.00--------1.00-------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGTCG...............................................481.000.00-1.00--------------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTAAGA..........................................................................2111.001.00----1.00-----------------------------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGACGAC.............................................5111.002.00--1.00-------------------------------------------------------------------------------------------
.........................................................................................................................................................GTGCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGATG...............................................5011.001.00-1.00--------------------------------------------------------------------------------------------
.............................................................................................................................................................GTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGAT................................................4511.001.001.00---------------------------------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGATGACACGGA........................................561.000.00--------------1.00-------------------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACCT..............................................................................1811.0011.00--------1.00-------------------------------------------------------------------------------------
..................................................................................................................................................................................TTCCTCTGGAAGCAGAGTCCTGATGA..............................................2611.001.00-------------------------1.00--------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGAGG...............................................4811.002.00-1.00--------------------------------------------------------------------------------------------
..........................................................................................................................................................TGCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTTATG...............................................491.000.00-1.00--------------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCATC..........................................................................211.000.00----1.00-----------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTTAGA..........................................................................2111.001.00----1.00-----------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGAAG...............................................4811.002.00---1.00------------------------------------------------------------------------------------------

Antisense strand
TTACCCTGGAACACCCCCTCTTCGTTGGAGGAATGTGCCAAAACTGCAAGGTAGGAGCACACCCACCCAGGAGAGGTGCCGTTGAGGCCGGCCCTTCGGCCTTCTGGCTGACTGTGTCCACCGCTTCTGGGCATGTACAGGGTGACACCCGGTGTGCGTGTGATGTAGACTTCAGAGCTTCCTCTGGAAGCAGAGTCCTGATGACACGGGCCCTTGGGTTTCAAGCTTTTGACTTGCTCTCATTTTTCTC
.............................................................................................................................................................((((.((...(((((....((((((...)))))).)))))...)).))))...........................................
......................................................................................................................................................151.....................................................207.........................................
SizePerfect hitTotal NormPerfect NormDRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM359192(GSM359192)
HepG2_3pM_6. (cell line)		GSM359193(GSM359193)
HepG2_3pM_7. (cell line)		GSM359190(GSM359190)
HepG2_3pM_4. (cell line)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		GSM359202(GSM359202)
hepg2_untreated_a. (cell line)		GSM359211(GSM359211)
hepg2_biotin_hl_2a. (cell line)		GSM359212(GSM359212)
hepg2_biotin_hl_2b. (cell line)		GSM359205(GSM359205)
HepG2_nucl_up. (cell line)		GSM359173(GSM359173)
hela_10_1. (hela)		GSM359187(GSM359187)
HepG2_2pM_1. (cell line)		GSM359186(GSM359186)
hepg2_untrtd. (cell line)		GSM359204(GSM359204)
HepG2_nucl_low. (cell line)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM359210(GSM359210)
hepg2_biotin_el_hl_b. (cell line)		GSM359188(GSM359188)
HepG2_2pM_2. (cell line)		GSM359209(GSM359209)
hepg2_biotin_el_hl_a. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189783GSM359175(GSM359175)
hela_5_pct. (hela)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359178(GSM359178)
hela_nucl_t. (hela)		GSM359194(GSM359194)
HepG2_TAP_AFFY_depl. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359207(GSM359207)
HepG2_tot_up. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM359206(GSM359206)
HepG2_tot_low. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359200(GSM359200)
hepg2_tap_pasr_a. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		GSM359201(GSM359201)
hepg2_tap_pasr_b. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR191442(GSM715552)
107genomic small RNA (size selected RNA from . (breast)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		GSM359185(GSM359185)
hepg2_tap_pasr. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)		SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359198(GSM359198)
hepg2_cip_tap_pasr_a. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)
...............................................................................................................................TGGGCATGTACAGGGCCA......................................................................................................... 181.000.00------------------------------------------------------------------1.00---------------------------
......................................................................................................................CACCGCTTCTGGGCATGTAA................................................................................................................ 201.000.00------------------------------1.00---------------------------------------------------------------
................CCTCTTCGTTGGAGGTA......................................................................................................................................................................................................................... 171.000.00-------------------------------1.00--------------------------------------------------------------
.......................................................................................................................ATGCCCAGAAGCGGT.................................................................................................................... 1520.500.50------------------------------------------------------0.50---------------------------------------