ID: uc002rfw.2_intron_17_0_chr2_25366732_f.3p
GENE: EFR3B(18)
chr2:25367629-25367878+


(4)
B-CELL 		(8)
BRAIN 		(2)
BREAST 		(10)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(1)
HELA 		(1)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(11)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
AACTGACCACCCTAAGATGGACAGAGAAGGCCCACAGCAATCGGAAGCTTCTATAAACTCCAAGTGTAGCCTGAGTGTGCACTGAGCCTTAGAGGACTGTGGACCAAGCAAAGGCAGAGGGGTAGGGAGGTGGGACTAGCAGCTCAGTCCTGGATCTCTGAGGGCTGGGAACTAAAGCCTCTGGGCTGCTTCTTCCCCAGATGAGGATCGTTTATCCAAGAGGAGGAGCATTGGAGAGACCATCTCCCTG
................................................................................................................................((.((((..((((((((((((((((.(((....)))))))))..........))))))))))..))))))....................................................
..........................................................................................................................123..........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189782GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191480(GSM715590)
38genomic small RNA (size selected RNA from t. (breast)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040025(GSM532910)
G613T. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577743(Rovira)
total RNA. (breast)
...............................................................................................................................AGGTGGGACTAGCAGCTCAGT......................................................................................................21112.0012.002.00--5.00-------1.00--------------1.001.00-1.00---------1.00------
...............................................................................................................................AGGTGGGACTAGCAGCTCAGTC.....................................................................................................2219.009.005.002.00--1.00--------------------1.00--------------------
...............................................................................................................................AGGTGGGACTAGCAGCTCAGA......................................................................................................2114.002.00-1.00------2.00------------------------1.00------------
.........................................................................................................................................................................................................TGAGGATCGTTTATCCAAGAGGAGGAGC.....................2814.004.00--4.00-------------------------------------------
...............................................................................................................................AGGTGGGACTAGCAGCTCAGTCA....................................................................................................2314.009.003.001.00--------------------------------------------
..............................................................................................................................................................TGAGGGCTGGGAACTCTG..........................................................................183.000.00----------1.00-1.00----------------------1.00----------
..............................................................................................................................GAGGTGGGACTAGCAGCTCAGTCA....................................................................................................242.000.00---------2.00------------------------------------
...............................................................................................................................AGGTGGGACTAGCAGCTCAG.......................................................................................................2012.002.00------------------1.00-------------------1.00-------
.........................................................................................................AAGCAAAGGCAGAGGCCAA..............................................................................................................................191.000.00-----------------1.00----------------------------
................................................................................................................................GGTGGGACTAGCAGCTCAGTCC....................................................................................................2211.001.00-1.00--------------------------------------------
............................................................................................................................................................TCTGAGGGCTGGGAACGGG...........................................................................191.000.00----------------------------------------1.00-----
...............................................................................................................................................................................................................................AGGAGCATTGGAGAGGGC.........181.000.00-------1.00--------------------------------------
...............................................................................................................................................................................................................................AGGAGCATTGGAGAGGACT........191.000.00-------1.00--------------------------------------
.................................................................................................................................................................................CCTCTGGGCTGCTTCTTCCCCAG..................................................2311.001.00---------------------1.00------------------------
..................................................................................................................................................................................CTCTGGGCTGCTTCTTCCCCCGA.................................................231.000.00-----------------------1.00----------------------
.............................................................................................................................................................CTGAGGGCTGGGAACTCTG..........................................................................191.000.00--------------1.00-------------------------------
.................................................................................................................................................................................CCTCTGGGCTGCTTCTTCCCC....................................................2111.001.00-----1.00----------------------------------------
.................................................................................................................................................................................CCTCTGGGCTGCTTCTTCCCAAA..................................................231.000.00-----1.00----------------------------------------
.................................................................................................................................GTGGGACTAGCAGCTCAGTCC....................................................................................................2111.001.00----1.00-----------------------------------------
..................................................................................................................................................................................CTCTGGGCTGCTTCTTCCCCCGT.................................................231.000.00------------------------------------1.00---------
..................................................................................................................................TGGGACTAGCAGCTCAGT......................................................................................................1811.001.00---------------1.00------------------------------
.....................................CAATCGGAAGCTTCTAT....................................................................................................................................................................................................1711.001.00--------------------1.00-------------------------
..............................................................................................................................GAGGTGGGACTAGCAGCTCAGTCCT...................................................................................................2511.001.00------1.00---------------------------------------
.............................................................................................................AAAGGCAGAGGGGTAACTA..........................................................................................................................191.000.00------------------------------1.00---------------
..........................................................................................................................................................................................................GAGGATCGTTTATCCAAGAGGAGGA.......................2511.001.00-------1.00--------------------------------------
...............................................................................................................................................................................................................................AGGAGCATTGGAGAGGGCT........191.000.00-------------------1.00--------------------------
...............................................................................................................................AGGTGGGACTAGCAGCTCAGCC.....................................................................................................2211.002.00-1.00--------------------------------------------
...................................................................................................................................................................................TCTGGGCTGCTTCTTCCTCAG..................................................211.000.00------1.00---------------------------------------
.........................................................................................................................................................................................................TGAGGATCGTTTATCCAAGAGGAGGAGCA....................2911.001.00--1.00-------------------------------------------
...............................................................................................................................AGGTGGGACTAGCAGCTCAGTCT....................................................................................................2311.009.00-----------------------------------------1.00----
........................................................................................................................................................................................................ATGAGGATCGTTTATCCAAGAGGAG.........................2511.001.00--1.00-------------------------------------------
...............................................................................................................................AGGTGGGACTAGCAGCTCAGTCAG...................................................................................................2411.009.00-----1.00----------------------------------------
............................................................................................................................................................TCTGAGGGCTGGGAACTCTG..........................................................................201.000.00-------------------------------1.00--------------
...............................................................................................................................AGGTGGGACTAGCAGCTCAGC......................................................................................................2111.002.00---1.00------------------------------------------
.................................................................................................................................................................................CCTCTGGGCTGCTTCTTCCCCAGTTT...............................................2611.001.001.00---------------------------------------------
.................................................TCTATAAACTCCAAGTTTTT.....................................................................................................................................................................................201.000.00------1.00---------------------------------------
........................................................................................................................................................................................................................CAAGAGGAGGAGCATTGGAGAGA...........2311.001.00----1.00-----------------------------------------
.............AAGATGGACAGAGAAGGAAAA........................................................................................................................................................................................................................211.000.00----------------------1.00-----------------------
...............................................................................................................................AGGTGGGACTAGCAGCTCAGTCC....................................................................................................2311.001.00----------------------------------1.00-----------
...................................................................................................................................................................................TCTGGGCTGCTTCTTCCCCCGT.................................................221.000.00-------------1.00--------------------------------
...................................................................................................................................................................................TCTGGGCTGCTTCTTCCCCAGT.................................................221.000.00----1.00-----------------------------------------
..................................................................................................................................................GTCCTGGATCTCTGAG........................................................................................1640.500.50------------------------------------------0.250.25--
....................................................................................................................................GGACTAGCAGCTCAG.......................................................................................................1530.330.33----------0.33-----------------------------------

Antisense strand
AACTGACCACCCTAAGATGGACAGAGAAGGCCCACAGCAATCGGAAGCTTCTATAAACTCCAAGTGTAGCCTGAGTGTGCACTGAGCCTTAGAGGACTGTGGACCAAGCAAAGGCAGAGGGGTAGGGAGGTGGGACTAGCAGCTCAGTCCTGGATCTCTGAGGGCTGGGAACTAAAGCCTCTGGGCTGCTTCTTCCCCAGATGAGGATCGTTTATCCAAGAGGAGGAGCATTGGAGAGACCATCTCCCTG
................................................................................................................................((.((((..((((((((((((((((.(((....)))))))))..........))))))))))..))))))....................................................
..........................................................................................................................123..........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189782GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191480(GSM715590)
38genomic small RNA (size selected RNA from t. (breast)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040025(GSM532910)
G613T. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577743(Rovira)
total RNA. (breast)
.......................................................................................................................................................GGATCTCTGAGGGCTCAT................................................................................. 181.000.00------------------------1.00---------------------
........................................................................................................................................................................................GCTGCTTCTTCCCCAGATTCA............................................. 211.000.00----------------------------1.00-----------------
...................................................................................................................AGAGGGGTAGGGAGGACC..................................................................................................................... 181.000.00--------------------------------1.00-------------
................................................................................................................................................CAGTCCTGGATCTCTCAAG....................................................................................... 191.000.00-------------------------------------1.00--------
..................................................................................................................CAGAGGGGTAGGGAGGTC...................................................................................................................... 181.000.00----------------1.00-----------------------------
..........................................................................................................................................TCCAGGACTGAGCTGC................................................................................................ 1640.250.25--------------------------------------------0.25-
..........................................................................................................................................GCAGCTCAGTCCTGGACCCG............................................................................................ 200.250.00---------------------------------------------0.25