ID: uc002rch.1_intron_0_0_chr2_16080474_r.3p
GENE: MYCNOS(2)
chr2:16080424-16080673-


(6)
AGO2.ip 		(13)
B-CELL 		(1)
BRAIN 		(5)
BREAST 		(16)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(6)
LIVER 		(2)
OTHER 		(12)
SKIN

Sense strand
CTGCGCTTTGAAGCTCGGGGGATATTATTAACTGAAAAATCTGACACACCCGGGGGGCGGGGAGAGAAGGGGGCTGTGGCGCAGACAAGGGGGAGGGAGAAAGGAGAGGAAAGCGGCTTTACCCCGCCCTCCTGATTTCCATAAAAATCAGGGGAGGCGCCAAGGCTTTCGCGCCAAAAGCCACTTGCTTTTCTTTGCAGAGAGAAGGCTGCAAAGCTGGGAAGCCCAGGGTGTGCTCCTCCCGCCCTTT
.........................................................................(((.....)))....(((((.(((..((((.............))))..))).))))).......................................................................................................................
................................................................65.................................................................132....................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189784SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR189783GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189782SRR343336SRR189785SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR343337GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)		SRR038855(GSM458538)
D10. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR343335SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		GSM532881(GSM532881)
G696N. (cervix)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		TAX577580(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR189786SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
.....................................................................GGGGCTGTGGCGCAGC.....................................................................................................................................................................16211.007.50---2.50-0.50---1.00----1.50--0.500.501.00---1.00-----0.50--0.50---------0.50---------------0.50-------0.50-
.....................................................................GGGGCTGTGGCGCAGTTGG..................................................................................................................................................................1928.507.50-2.00-----1.000.50------------0.50---------0.50-1.00--------------0.50---0.50-0.500.50---0.50--0.50-----
.....................................................................GGGGCTGTGGCGCAG......................................................................................................................................................................1527.507.500.50--0.50--------2.00-0.50--1.50------------------------0.50-------0.50--0.50--0.50-------0.50---
.....................................................................GGGGCTGTGGCGCAGCTGG..................................................................................................................................................................1927.507.50-1.00----1.000.50-0.50-0.50---0.500.50--0.50----0.50------0.500.50------------0.50---------------0.50------
.....................................................................GGGGCTGTGGCGCAGCTG...................................................................................................................................................................1826.007.50-----0.50-0.501.50--1.00---1.000.50---------------------0.50----------------------------0.50
.....................................................................GGGGCTGTGGCGCAGT.....................................................................................................................................................................1626.007.50-1.50-1.50--1.00--0.50----------0.50---------------------------------------0.50--0.50----
.......................................................GGCGGGGAGAGAAGGGGCG................................................................................................................................................................................193.000.00----2.00------------------------------------------1.00--------------------
........................................................GCGGGGAGAGAAGGGGCG................................................................................................................................................................................182.000.00----1.00-----1.00---------------------------------------------------------
........................................................GCGGGGAGAGAAGGGTC.................................................................................................................................................................................172.000.00-------------------------------------------1.001.00-----------------------
.......................................................GGCGGGGAGAGAAGGGTC.................................................................................................................................................................................1881.750.25----1.62-----0.12---------------------------------------------------------
.....................................................................GGGGCTGTGGCGCAGTTG...................................................................................................................................................................1821.507.50-0.50---------0.50---0.50----------------------------------------------------
.............................................................................................................AAAGCGGCTTTACCCACAA..........................................................................................................................191.000.00-------------1.00------------------------------------------------------
...........................TTAACTGAAAAATCTGAACGT..........................................................................................................................................................................................................211.000.00-------------------------------------1.00------------------------------
.....................................................................GGGGCTGTGGCGCAGACC...................................................................................................................................................................181.000.00---------------------1.00----------------------------------------------
............................................................GGAGAGAAGGGGGCTGTTTTT.........................................................................................................................................................................211.000.00----------------1.00---------------------------------------------------
...............................................ACCCGGGGGGCGGGGGC..........................................................................................................................................................................................171.000.001.00-------------------------------------------------------------------
..............................................CACCCGGGGGGCGGGGGGCG........................................................................................................................................................................................201.000.00-----------------------------------------1.00--------------------------
.....................................................................GGGGCTGTGGCGCAGTGG...................................................................................................................................................................1821.007.50-0.50-----------------------------------------------0.50------------------
.............................................................................................................AAAGCGGCTTTACCCCAA...........................................................................................................................181.000.00-------------1.00------------------------------------------------------
.....................................................................GGGGCTGTGGCGCAGCTGA..................................................................................................................................................................1921.007.50------1.00-------------------------------------------------------------
................................................CCCGGGGGGCGGGGAGAGAAGGGGGC................................................................................................................................................................................2611.001.00----------------------------------------1.00---------------------------
..............................................................AGAGAAGGGGGCTGTATA..........................................................................................................................................................................181.000.00---------------------------1.00----------------------------------------
.....................................................................GGGGCTGTGGCGCAGATGG..................................................................................................................................................................191.000.00-1.00------------------------------------------------------------------
....................................................GGGGGCGGGGAGAGAATT....................................................................................................................................................................................181.000.00--------------------------1.00-----------------------------------------
.....................................................................................................AGGAGAGGAAAGCGGAA....................................................................................................................................171.000.00------------------------------1.00-------------------------------------
.....................................................................GGGGCTGTGGCGCAGCT....................................................................................................................................................................1721.007.50---------0.50-----------------------------------0.50----------------------
...................................................GGGGGGCGGGGAGAGTAAA....................................................................................................................................................................................191.000.00----------------------------------1.00---------------------------------
......................................................................................................................................................................................................................AGCTGGGAAGCCCAGGCGG.................191.000.00----------------------1.00---------------------------------------------
.....................................................................GGGGCTGTGGCGCAGACCGGT................................................................................................................................................................211.000.00-----1.00--------------------------------------------------------------
...............................................ACCCGGGGGGCGGGGAGCGGT......................................................................................................................................................................................211.000.00----------1.00---------------------------------------------------------
...........................................................................................................GGAAAGCGGCTTTACACA.............................................................................................................................181.000.00---------------------------------------1.00----------------------------
...................................................GGGGGGCGGGGAGAGAAGGG...................................................................................................................................................................................2011.001.00-----1.00--------------------------------------------------------------
..............................................CACCCGGGGGGCGGGGAGAGAAGGGGGC................................................................................................................................................................................2811.001.00-------------------------1.00------------------------------------------
.....................................................................GGGGCTGTGGCGCAGTTTG..................................................................................................................................................................1921.007.50-------0.50----------------0.50-------------------------------------------
..................................................CGGGGGGCGGGGAGAGCCC.....................................................................................................................................................................................191.000.00-----------------------------------1.00--------------------------------
...................................................GGGGGGCGGGGAGAGACGAG...................................................................................................................................................................................201.000.00-----1.00--------------------------------------------------------------
.....................................................................GGGGCTGTGGCGCAGACCGG.................................................................................................................................................................201.000.00---1.00----------------------------------------------------------------
......................................ATCTGACACACCCGG.....................................................................................................................................................................................................1511.001.00--------------------1.00-----------------------------------------------
..........................................................................TGTGGCGCAGACAAGGTGGG............................................................................................................................................................201.000.00-1.00------------------------------------------------------------------
.....................................................................GGGGCTGTGGCGCAGCAA...................................................................................................................................................................1820.507.50--------0.50-----------------------------------------------------------
.....................................................................GGGGCTGTGGCGCAGTCAA..................................................................................................................................................................1920.507.50--------------------------------------0.50-----------------------------
...............................................................GAGAAGGGGGCTGTGGCG.........................................................................................................................................................................1820.500.50---------------------------------------------------------0.50----------
.........................................................CGGGGAGAGAAGGGGG.................................................................................................................................................................................1620.500.50---------------------------------------------------0.50----------------
.....................................................................GGGGCTGTGGCGCAGTCTG..................................................................................................................................................................1920.507.50-----------------------------0.50--------------------------------------
.....................................................................GGGGCTGTGGCGCAGTCC...................................................................................................................................................................1820.507.50------0.50-------------------------------------------------------------
.....................................................................GGGGCTGTGGCGCAGCGG...................................................................................................................................................................1820.507.50-----------------------------------------------------------------0.50--
.......................................................GGCGGGGAGAGAAGGG...................................................................................................................................................................................1680.250.25----0.25---------------------------------------------------------------

Antisense strand
CTGCGCTTTGAAGCTCGGGGGATATTATTAACTGAAAAATCTGACACACCCGGGGGGCGGGGAGAGAAGGGGGCTGTGGCGCAGACAAGGGGGAGGGAGAAAGGAGAGGAAAGCGGCTTTACCCCGCCCTCCTGATTTCCATAAAAATCAGGGGAGGCGCCAAGGCTTTCGCGCCAAAAGCCACTTGCTTTTCTTTGCAGAGAGAAGGCTGCAAAGCTGGGAAGCCCAGGGTGTGCTCCTCCCGCCCTTT
.........................................................................(((.....)))....(((((.(((..((((.............))))..))).))))).......................................................................................................................
................................................................65.................................................................132....................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189784SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR189783GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189782SRR343336SRR189785SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR343337GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)		SRR038855(GSM458538)
D10. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR343335SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		GSM532881(GSM532881)
G696N. (cervix)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		TAX577580(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR189786SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
..............................................CACCCGGGGGGCGGGGGGA......................................................................................................................................................................................... 192.000.00--2.00-----------------------------------------------------------------
................................................CCCGGGGGGCGGGGAGAG........................................................................................................................................................................................ 182.000.002.00-------------------------------------------------------------------
..............................................CACCCGGGGGGCGGGGGG.......................................................................................................................................................................................... 182.000.002.00-------------------------------------------------------------------
................................................CCCGGGGGGCGGGGAGA......................................................................................................................................................................................... 172.000.00--2.00-----------------------------------------------------------------
................................................CCCGGGGGGCGGGGAGGGA....................................................................................................................................................................................... 192.000.002.00-------------------------------------------------------------------
.........................................................................................GGGGAGGGAGAAAGGAGAGAG............................................................................................................................................ 211.000.00-------1.00------------------------------------------------------------
................................................CCCGGGGGGCGGGGAGGGG....................................................................................................................................................................................... 191.000.001.00-------------------------------------------------------------------
.........................................................CGGGGAGAGAAGGGGGCTTTCT........................................................................................................................................................................... 221.000.00------------------------------------1.00-------------------------------
..................................................................................................................................................................AGGCTTTCGCGCCAAAACTG.................................................................... 201.000.00-1.00------------------------------------------------------------------
.......................................................................................CCTCTCCTTTCTCCCTCCCCCT............................................................................................................................................. 2211.001.00----------------------------------------------1.00---------------------
............................................CACACCCGGGGGGCGGGGGG.......................................................................................................................................................................................... 201.000.00------------------1.00-------------------------------------------------
..............................................CACCCGGGGGGCGGGGAG.......................................................................................................................................................................................... 181.000.00--1.00-----------------------------------------------------------------
..............................................CACCCGGGGGGCGGGGAGG......................................................................................................................................................................................... 191.000.001.00-------------------------------------------------------------------
................................................CCCGGGGGGCGGGGAGGGGG...................................................................................................................................................................................... 201.000.00--1.00-----------------------------------------------------------------
............................................CACACCCGGGGGGCGGGGG........................................................................................................................................................................................... 191.000.00----------------------------1.00---------------------------------------