ID: uc002rcc.1_intron_43_0_chr2_15674766_r.5p
GENE: NBAS(8)
chr2:15676342-15676591-


(10)
CELL-LINE
(1)
CERVIX
(3)
HEART
(1)
OTHER
(1)
RRP40.ip
(7)
SKIN
(1)
XRN.ip

Sense strand
GAACTCCTGGTCATCAATTACCGAGGAGAACTTAGAAGTTACCTTGTAAGGTAAAAATGTGCTTTGGAAGCCATATTTGAAATAATGTTTATTTCTCTGGTTTAATGTCAGATTTTGATATTTCTTTTTTTTTTTGCTTTCTGTCTATTATGAAAAATTGCAAATATAATAGGGAATTTGAAAGAGTGGTGTGGTGAACACCCATTACTTCCACTTGGGTTCTACAATTAGGATTTTACTGTGCTTGCTA
.....................................................................................................................((((..(((((((........((((..((((((((............))))))))))))...)))))))..))))..........................................................
...................................................................................................................116..........................................................................193.......................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189785SRR040039(GSM532924)
G531T. (cervix)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
........................................................................................................................TTTCTTTTTTTTTTTGCTTGGCG...........................................................................................................2333.000.0026.007.00--------------------
.........................................................................................................................TTCTTTTTTTTTTTGCTTGGCG...........................................................................................................2216.000.0012.004.00--------------------
..........................................................................................................................TCTTTTTTTTTTTGCTTGGCG...........................................................................................................2115.000.009.005.00--------------1.00-----
...........................................................................................................................CTTTTTTTTTTTGCTTGGCG...........................................................................................................207.000.006.001.00--------------------
...........................................................................................................................CTTTTTTTTTTTGCTTGGC............................................................................................................193.000.003.00---------------------
.....................................................................................................................ATATTTCTTTTTTTTTTTGCTTTCCGTC.........................................................................................................283.000.003.00---------------------
........................................................................................................................TTTCTTTTTTTTTTTGCTTTTTTC..........................................................................................................242.000.002.00---------------------
.........................................................................................................................TTCTTTTTTTTTTTGCTTTCTAGG.........................................................................................................242.000.001.001.00--------------------
.....................................................................................................................ATATTTCTTTTTTTTTTTGCTTTCTGT..........................................................................................................2712.002.00-2.00--------------------
..................TACCGAGGAGAACTTAGAAGTT..................................................................................................................................................................................................................2212.002.00----2.00-----------------
.....................................................................................................................ATATTTCTTTTTTTTTTTAAG................................................................................................................212.000.00-1.00-----1.00--------------
........................................................................................................................TTTCTTTTTTTTTTTGCTTGGC............................................................................................................222.000.001.001.00--------------------
...............AATTACCGAGGAGAACTTAGAAGTTACC...............................................................................................................................................................................................................2812.002.00--2.00-------------------
................................................................................................................................................................................................................TTCCACTTGGGTTCTACAATTAG...................2312.002.00------2.00---------------
..........................................................................................................................TCTTTTTTTTTTTGCTTTCTAGG.........................................................................................................232.000.00-2.00--------------------
..........................................................................................................................TCTTTTTTTTTTTGCTCCTG............................................................................................................201.000.00--------1.00-------------
..........................................................................................................................TCTTTTTTTTTTTGCTTAGGG...........................................................................................................211.000.00-1.00--------------------
..........................................................................................................................TCTTTTTTTTTTTGCTTTCG............................................................................................................201.000.00-----1.00----------------
........................................................................................................................TTTCTTTTTTTTTTTGCGCG..............................................................................................................201.000.001.00---------------------
...........................................................................................................................................................................GGGAATTTGAAAGAGCAA.............................................................181.000.00-------------1.00--------
..........................................................................................................................TCTTTTTTTTTTTGCTTCGGG...........................................................................................................211.000.001.00---------------------
.......................................................................................................................ATTTCTTTTTTTTTTTGCAGG..............................................................................................................211.000.00-1.00--------------------
..........................................................................................................................TCTTTTTTTTTTTGCTTTCTA...........................................................................................................211.000.001.00---------------------
...............AATTACCGAGGAGAACTTAGAAGTTAC................................................................................................................................................................................................................2711.001.00---------1.00------------
.......................................................................................................................ATTTCTTTTTTTTTTTGCACT..............................................................................................................211.000.001.00---------------------
............................................................................................................................TTTTTTTTTTTGCTTTCTGGGTT.......................................................................................................231.000.00-1.00--------------------
........................................................................................................................TTTCTTTTTTTTTTTGCTGGGG............................................................................................................221.000.00-------1.00--------------
........................................................................................................................TTTCTTTTTTTTTTTGCTTTAAC...........................................................................................................231.000.00-1.00--------------------
.......................AGGAGAACTTAGAAGTT..................................................................................................................................................................................................................1721.001.00---0.50-------------0.50----
.........................................................................................................................TTCTTTTTTTTTTTGCGAGC.............................................................................................................201.000.001.00---------------------
.....................................................................................TGTTTATTTCTCTGGTTTAACGTC.............................................................................................................................................241.000.00-1.00--------------------
......................................................................................................................................................................TAATAGGGAATTTGAGC...................................................................171.000.00----------1.00-----------
.......................................................................................................................ATTTCTTTTTTTTTTTGCTTTCTGTC.........................................................................................................2611.001.001.00---------------------
..........................................................................................................................TCTTTTTTTTTTTGCTTCTCC...........................................................................................................211.000.001.00---------------------
................ATTACCGAGGAGAACTTAGA......................................................................................................................................................................................................................2011.001.00---1.00------------------
........................................................................................................................TTTCTTTTTTTTTTTGCTTTCTGCC.........................................................................................................251.000.00-1.00--------------------
......................GAGGAGAACTTAGAAGTT..................................................................................................................................................................................................................1811.001.00--1.00-------------------
......................................................................................................................TATTTCTTTTTTTTTTTGCTTTGGAA..........................................................................................................261.000.001.00---------------------
................ATTACCGAGGAGAACTTAGAAGTTACC...............................................................................................................................................................................................................2711.001.00---1.00------------------
...............................................................................................................................................TCTATTATGAAAAATTTTT........................................................................................191.000.00-----1.00----------------
.........................................................................................................................TTCTTTTTTTTTTTGCTGTC.............................................................................................................201.000.00-1.00--------------------
...........................................................................................................TCAGATTTTGATATTTCTTTTTTTTTT....................................................................................................................2711.001.001.00---------------------
...........................................................................................................................CTTTTTTTTTTTGCTTGGCA...........................................................................................................201.000.001.00---------------------
...............AATTACCGAGGAGAACTTAGA......................................................................................................................................................................................................................2111.001.00--------------1.00-------
.....................................................................................................................ATATTTCTTTTTTTTTTGGC.................................................................................................................201.000.001.00---------------------
........................................................................................................................TTTCTTTTTTTTTTTGCTTTCTAGG.........................................................................................................251.000.001.00---------------------
..........................................................................................................................TCTTTTTTTTTTTGCTTTCTAG..........................................................................................................221.000.001.00---------------------
..........................................................................................................................TCTTTTTTTTTTTGCTTGGCC...........................................................................................................211.000.00-1.00--------------------
........................................................................................................................TTTCTTTTTTTTTTTGCTTGGTG...........................................................................................................231.000.001.00---------------------
.......................................................................................................................ATTTCTTTTTTTTTTTGCTTTTGAG..........................................................................................................251.000.001.00---------------------
.............................................................................................................................TTTTTTTTTTGCTTTCGAGG.........................................................................................................201.000.00-1.00--------------------
........................................................................................................................TTTCTTTTTTTTTTTGCTGGCG............................................................................................................221.000.001.00---------------------
........................................................................................................................TTTCTTTTTTTTTTTGCTGGC.............................................................................................................211.000.001.00---------------------
.....................................................................................................................ATATTTCTTTTTTTTTTGGAG................................................................................................................211.000.001.00---------------------
.....................................................................................................................ATATTTCTTTTTTTTTTTATCA...............................................................................................................221.000.00--------1.00-------------
..................................................GTAAAAATGTGCTTTGG.......................................................................................................................................................................................1720.500.50----0.50-----------------
.................................AGAAGTTACCTTGTAAG........................................................................................................................................................................................................1720.500.50------------------0.50---
................ATTACCGAGGAGAACT..........................................................................................................................................................................................................................1620.500.50-------------------0.50--
........................GGAGAACTTAGAAGTT..................................................................................................................................................................................................................1640.250.25---------0.25------------
.........................................................................................................................................................................TAGGGAATTTGAAAGA.................................................................1650.200.20---------------------0.20

Antisense strand
GAACTCCTGGTCATCAATTACCGAGGAGAACTTAGAAGTTACCTTGTAAGGTAAAAATGTGCTTTGGAAGCCATATTTGAAATAATGTTTATTTCTCTGGTTTAATGTCAGATTTTGATATTTCTTTTTTTTTTTGCTTTCTGTCTATTATGAAAAATTGCAAATATAATAGGGAATTTGAAAGAGTGGTGTGGTGAACACCCATTACTTCCACTTGGGTTCTACAATTAGGATTTTACTGTGCTTGCTA
.....................................................................................................................((((..(((((((........((((..((((((((............))))))))))))...)))))))..))))..........................................................
...................................................................................................................116..........................................................................193.......................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189785SRR040039(GSM532924)
G531T. (cervix)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
.............................................................................TGAAATAATGTTTATTCTG.......................................................................................................................................................... 191.000.00------------1.00---------
..........................................................................................................................TCTTTTTTTTTTTGCTTGCGA........................................................................................................... 211.000.00---------------1.00------
.................................................................................................................TTTGATATTTCTTTTTTTTTTGCCT................................................................................................................ 251.000.00-----------1.00----------
.............................................................AATATGGCTTCCAAAG............................................................................................................................................................................. 1640.250.25--------------------0.25-
...........................................ACATTTTTACCTTACAA.............................................................................................................................................................................................. 1740.250.25-----0.25----------------