ID: uc002rao.1_intron_10_0_chr2_10585391_r.3p
GENE: ODC1(1)
chr2:10585341-10585590-


(1)
AGO2.ip 		(2)
B-CELL 		(2)
BRAIN 		(9)
BREAST 		(16)
CELL-LINE 		(1)
CERVIX 		(6)
HEART 		(4)
HELA 		(1)
KIDNEY 		(1)
LIVER 		(2)
OTHER 		(34)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CCTGGTATTTTTTGTTGTGTCCTTATACTGCCAAGGTTTATGGAATCATGTACCTTATGCCTAGTAATAATTAGGATGACCAGGCCAGTGAGTGGTTCATATCCGGGGCATGATTAGCTCTGCGTGTGCTCAGCCAGTGCCCCATCTTCAACTCGATGTGTTCCTAAGGTAGACAGCAAATTCCCTATTTTATTTCTCAGATTGTCACTGCTGTTCCAAGGGCACACGCAGAGGGATTTGGAATTCCTGG
.........................................................................(((((....(((((.....)))))..)))))..................................................................................................................................................
............................................................61...................................................114......................................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191488(GSM715598)
14genomic small RNA (size selected RNA from t. (breast)		SRR029124(GSM416753)
HeLa. (hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191543(GSM715653)
124genomic small RNA (size selected RNA from . (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191467(GSM715577)
115genomic small RNA (size selected RNA from . (breast)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR191541(GSM715651)
63genomic small RNA (size selected RNA from t. (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR191546(GSM715656)
152genomic small RNA (size selected RNA from . (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
............................................................................................TGGTTCATATCCGGGTGC............................................................................................................................................18244.506.007.00-4.00-3.003.001.00-2.00-3.001.001.001.001.00-----1.00---------1.001.00---1.001.00---1.00-----1.001.00-1.00----1.00-1.00---1.00----1.00---1.00---1.001.001.00--0.50-
............................................................................................TGGTTCATATCCGGGTGCC...........................................................................................................................................19225.506.005.00-----------1.00-1.001.00--2.000.50--1.001.00-1.00---1.00----1.00------1.00--1.00---1.00---1.00---------1.001.001.00-1.00-1.00-1.00---------
............................................................................................TGGTTCATATCCGGGTG.............................................................................................................................................17212.506.003.00-----2.00----------2.00-0.501.00-1.00---1.00------------1.00------------------1.00---------------------
............................................................................................TGGTTCATATCCGGG...............................................................................................................................................1526.006.000.50-0.50-0.50-------0.50----------1.000.500.500.50-------------------------------------------------0.500.50-0.50
....................................................................................................................................................................................................................................CAGAGGGATTTGGAATTCCT..2015.005.00---5.00----------------------------------------------------------------------------
............................................................................................TGGTTCATATCCGGGT..............................................................................................................................................1625.006.00--1.00--------2.00------------1.00-------------1.00-----------------------------------------
.......................................................................................................................................................................................................GATTGTCACTGCTGTTCCAAGGG............................2313.003.00-------3.00------------------------------------------------------------------------
.......................................................................................................................................................................................................................CCAAGGGCACACGCAGAGGG...............2012.002.00-------------------------------------1.00-------1.00----------------------------------
.........................................................................................................................................................................................................................AAGGGCACACGCAGAGGGATCCGG.........2412.001.00-2.00------------------------------------------------------------------------------
................................................................................................................................................................................................................................CACGCAGAGGGATTTGGAATT.....2112.002.00---------------------2.00----------------------------------------------------------
...........................................................................................................................................................................................................GTCACTGCTGTTCCAAGGG............................1912.002.00---------2.00----------------------------------------------------------------------
..........................................................................................................................................................................................................................AGGGCACACGCAGAGGGACG............201.000.00-1.00------------------------------------------------------------------------------
......................................................................................AGTGAGTGGTTCATAGTG..................................................................................................................................................181.000.00---------------1.00----------------------------------------------------------------
......................................................................................................................................................................................................................TCCAAGGGCACACGCAGAGGGATCTG..........261.000.00-1.00------------------------------------------------------------------------------
.................................................................................................................................................................................................................................ACGCAGAGGGATTTGGAAT......1911.001.00---------------------------------------------------1.00----------------------------
.........................................................................................................................................................................................................................AAGGGCACACGCAGAGGGAT.............2011.001.00----------------1.00---------------------------------------------------------------
.....................................................................................................................................................................................................................TTCCAAGGGCACACGCAGAGGGATCTGG.........281.000.00-1.00------------------------------------------------------------------------------
......................................................................................................................................................................................................AGATTGTCACTGCTGTTCCAAGGGAA..........................2611.001.00------------------------------------------1.00-------------------------------------
..........................................................................................................................................................................................................................AGGGCACACGCAGAGGGATTCGG.........231.000.00-1.00------------------------------------------------------------------------------
.........................................................................................................................................................................................................................AAGGGCACACGCAGAGGGA..............1911.001.00-------------------1.00------------------------------------------------------------
..................................................................................................................................................................................................................CTGTTCCAAGGGCACACGCAG...................2111.001.00---------------------------1.00----------------------------------------------------
.................................................................AATAATTAGGATGACCAGG......................................................................................................................................................................1911.001.00-------------------------------------------1.00------------------------------------
.................................................................................AGGCCAGTGAGTGGTTCATATCCGGGGCATG..........................................................................................................................................3111.001.00-----------------------------------------------------------1.00--------------------
.....................................................................ATTAGGATGACCAGGCCAGTGAGCGGT..........................................................................................................................................................271.000.00-1.00------------------------------------------------------------------------------
...............................................................................................................................................................................................................................ACACGCAGAGGGATTTGG.........1811.001.00----------------------------1.00---------------------------------------------------
.....................................................................................................................................................................................................................TTCCAAGGGCACACGCAGAGGGA..............2311.001.001.00-------------------------------------------------------------------------------
.........................................................................................................................................................................................................TTGTCACTGCTGTTCCAAGGGC...........................2211.001.00-------------------------------------------------------------1.00------------------
..................................................................................................................................................................................................................................CGCAGAGGGATTTGGAA.......1711.001.00--------1.00-----------------------------------------------------------------------
.......................................................................................................................................................................................................................................AGGGATTTGGAATTCCTGG1911.001.00-----------------------------------------------------1.00--------------------------
......................................................................................................................................................................................................AGATTGTCACTGCTGTTCCAAGGG............................2411.001.00---------------------------------------------------------1.00----------------------
.........................................................................................................................................................................................................................AAGGGCACACGCAGAGGGATCTGG.........2411.001.00-1.00------------------------------------------------------------------------------
.........................................................................................................................................................................................TATTTTATTTCTCAGATTGTCACTGCT......................................2711.001.00-------------1.00------------------------------------------------------------------
...........................................................................................................................................................................................................................GGGCACACGCAGAGGGATTTGGAATTCAA..291.000.00--------------------------------------------------1.00-----------------------------
........................................................................................................................................................TCGATGTGTTCCTAATA.................................................................................171.000.00-------------------------------------------------------1.00------------------------
......................................................................................................................................................................................................................TCCAAGGGCACACGCAGAGGGATCTGG.........271.000.00-1.00------------------------------------------------------------------------------
..........................................................................................................................................................GATGTGTTCCTAAGGTAGACAGC.........................................................................2311.001.00-------------------------------------------------------------------1.00------------
..................................................................................................................................CAGCCAGTGCCCCATCTTCAACTC................................................................................................2411.001.00------------------------------------------------------------------------1.00-------
.......................................................................................................................................................................................................GATTGTCACTGCTGTTCCA................................1911.001.00----------------1.00---------------------------------------------------------------
..................................................................................................................................................................................................................................CGCAGAGGGATTTGGAAT......1811.001.00---------------------------------1.00----------------------------------------------
..................................................................ATAATTAGGATGACCAGGCCAGTGAGCGG...........................................................................................................................................................291.000.00-1.00------------------------------------------------------------------------------
..............................................................................................................................................................................................................................CACACGCAGAGGGATTTGGAATTCCTGG2811.001.00---------1.00----------------------------------------------------------------------
...............................................................................................................................................................................................................CTGCTGTTCCAAGGGC...........................1650.200.20---------------------------0.20----------------------------------------------------

Antisense strand
CCTGGTATTTTTTGTTGTGTCCTTATACTGCCAAGGTTTATGGAATCATGTACCTTATGCCTAGTAATAATTAGGATGACCAGGCCAGTGAGTGGTTCATATCCGGGGCATGATTAGCTCTGCGTGTGCTCAGCCAGTGCCCCATCTTCAACTCGATGTGTTCCTAAGGTAGACAGCAAATTCCCTATTTTATTTCTCAGATTGTCACTGCTGTTCCAAGGGCACACGCAGAGGGATTTGGAATTCCTGG
.........................................................................(((((....(((((.....)))))..)))))..................................................................................................................................................
............................................................61...................................................114......................................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191488(GSM715598)
14genomic small RNA (size selected RNA from t. (breast)		SRR029124(GSM416753)
HeLa. (hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191543(GSM715653)
124genomic small RNA (size selected RNA from . (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191467(GSM715577)
115genomic small RNA (size selected RNA from . (breast)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR191541(GSM715651)
63genomic small RNA (size selected RNA from t. (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR191546(GSM715656)
152genomic small RNA (size selected RNA from . (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
..........................................GAATCATGTACCTTATAAC............................................................................................................................................................................................. 191.000.00-----------------------------------------------------------------------1.00--------
....................................................................AATTAGGATGACCAGTTAG................................................................................................................................................................... 191.000.00--------------------------------1.00-----------------------------------------------