ID: uc002rai.1_intron_0_0_chr2_10281769_f
GENE: (1)
chr2:10281719-10282030+


(4)
B-CELL 		(1)
BRAIN 		(2)
BREAST 		(17)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(1)
LIVER 		(2)
OTHER 		(4)
SKIN 		(1)
XRN.ip

Sense strand
TGGAGTCAAGAATGCATGTGCTTAAGGATTCCAAGATCACACGGAGGAGGGTATGATTAGCTCTGGGAAGCGGGGAGGCAGGAAGGAGGGCAAGAGACCTCGACCTGTTCTTGGGAAGGAAAGAGCAGGTGAGGGTGGGGTACTGTTCCAAGCACGGGAAACAGAGCCCCAGGAGGTGGCCATGGCCTGGGGCTGGGGCTGGGGCTGGGAGGCGGTTGCTCCAGCATGCAGTCACTGAGCCCTCCTGTATGCACTGCTGCAGGTGCTGGGAGACCGTGAAGTGCAAAGCAGATGGAGTCCAGGCCCTCGGGG
.........................................................................................((((...(((((.((((((((((........)))))))))).....((((((.(((((((.......)))).))).)))))).))))).(((.((((((..(((....))).))))))...)))..)))).............................................................................................
.............................................................................78...........................................................................................................................................219...........................................................................................
SizePerfect hitTotal NormPerfect NormSRR038860(GSM458543)
MM426. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189784SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040037(GSM532922)
G243T. (cervix)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040036(GSM532921)
G243N. (cervix)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR189785SRR038855(GSM458538)
D10. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR189786TAX577589(Rovira)
total RNA. (breast)		SRR038863(GSM458546)
MM603. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR038856(GSM458539)
D11. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................................................................................................................................................................................TGGGGCTGGGGCTGGGAGGGAA.................................................................................................2220.000.004.005.00-2.00-2.003.00--1.00----1.00-----------1.00--1.00--------
................................................................................................................................................................................................CTGGGGCTGGGGCTGGGAGGGAA.................................................................................................235.000.00---2.001.001.00------------------1.00-------------
.................................................................................................................................................................................................TGGGGCTGGGGCTGGGAGGGTA.................................................................................................223.000.001.00---1.00--------------------------1.00------
.................................................................................................................................................................................................TGGGGCTGGGGCTGGGAGGGAAA................................................................................................233.000.00---1.001.001.00--------------------------------
..................................................................................AAGGAGGGCAAGAGACTT....................................................................................................................................................................................................................181.000.00------------------1.00-------------------
.................................................................................................................................................................................................TGGGGCTGGGGCTGGGAGGGAT.................................................................................................221.000.00-1.00------------------------------------
............................................................................................AGAGACCTCGACCTGC............................................................................................................................................................................................................161.000.00------------1.00-------------------------
.............................................................................................................CTTGGGAAGGAAAGAGCAGG.......................................................................................................................................................................................2011.001.00-------------------------1.00------------
....................................................................................................................................................................................................GGCTGGGGCTGGGAGGGAA.................................................................................................191.000.00-----------1.00--------------------------
.............................................................TCTGGGAAGCGGGGAGGCAGGAAGGAGGGC.............................................................................................................................................................................................................................3011.001.00----------------1.00---------------------
.................................................................................................................................................................................................TGGGGCTGGGGCTGGGAGGGAGT................................................................................................231.000.001.00-------------------------------------
........................AGGATTCCAAGATCACACGGAGGAGGGTACG.................................................................................................................................................................................................................................................................311.000.00--------1.00-----------------------------
.................................................................................................................................................................................................TGGGGCTGGGGCTGGGAGGGAGA................................................................................................231.000.00---------1.00----------------------------
.......................AAGGATTCCAAGATCACACGGAGGAGGGA....................................................................................................................................................................................................................................................................291.000.00--------1.00-----------------------------
....................................................................................................................................................CAAGCACGGGAAACAGAGCCCCAGG...........................................................................................................................................2511.001.00-------------------1.00------------------
................................................................................................................................................................................................CTGGGGCTGGGGCTGGGAGGGAGA................................................................................................241.000.00----1.00---------------------------------
......................................................................................................................................................................................TGGCCTGGGGCTGGGGCTGGGGCCC.........................................................................................................251.000.00----------1.00---------------------------
................................................................................................................................................................................................CTGGGGCTGGGGCTGGGAGGGAAA................................................................................................241.000.00-----------------------1.00--------------
...............................................................TGGGAAGCGGGGAGGTGAG......................................................................................................................................................................................................................................191.000.00-------1.00------------------------------
..................................................................................................................................................TCCAAGCACGGGAAAGGTT...................................................................................................................................................191.000.00---------------------------1.00----------
...................................................................................................................AAGGAAAGAGCAGGTTATA..................................................................................................................................................................................191.000.00--------------------------------1.00-----
.................................................................................................................................................................................................TGGGGCTGGGGCTGGGAGGGATA................................................................................................231.000.001.00-------------------------------------
................................................................................GGAAGGAGGGCAAGATGTT.....................................................................................................................................................................................................................191.000.00-------------1.00------------------------
.................................................................................................................................................................................................TGGGGCTGGGGCTGGGAGGGCGA................................................................................................231.000.00---------------1.00----------------------
...............................................................TGGGAAGCGGGGAGGGTC.......................................................................................................................................................................................................................................181.000.00----------------------------1.00---------
................................................................................................................................................................................................CTGGGGCTGGGGCTGGGAGGAAA.................................................................................................231.000.001.00-------------------------------------
................................................................................................................................................................................................................................................CCTCCTGTATGCACTGC.......................................................1720.500.50---------------------------------0.50----
...................................ATCACACGGAGGAGGG.....................................................................................................................................................................................................................................................................1620.500.50----------0.50---------------------------
..............................................................................................................TTGGGAAGGAAAGAGCAG........................................................................................................................................................................................1830.330.33----------------------------------0.33---
...........................................................................................................................................................................................TGGGGCTGGGGCTGGGGCTGGGAG.....................................................................................................2430.330.33-----------------------------------0.33--
..............................................................................................................................................................................................GGCTGGGGCTGGGGCTGGGAG.....................................................................................................2170.140.14------------------------------------0.14-
.........................................................................................................................................................................CAGGAGGTGGCCATGG...............................................................................................................................1680.120.12-------------------------------------0.12

Antisense strand
TGGAGTCAAGAATGCATGTGCTTAAGGATTCCAAGATCACACGGAGGAGGGTATGATTAGCTCTGGGAAGCGGGGAGGCAGGAAGGAGGGCAAGAGACCTCGACCTGTTCTTGGGAAGGAAAGAGCAGGTGAGGGTGGGGTACTGTTCCAAGCACGGGAAACAGAGCCCCAGGAGGTGGCCATGGCCTGGGGCTGGGGCTGGGGCTGGGAGGCGGTTGCTCCAGCATGCAGTCACTGAGCCCTCCTGTATGCACTGCTGCAGGTGCTGGGAGACCGTGAAGTGCAAAGCAGATGGAGTCCAGGCCCTCGGGG
.........................................................................................((((...(((((.((((((((((........)))))))))).....((((((.(((((((.......)))).))).)))))).))))).(((.((((((..(((....))).))))))...)))..)))).............................................................................................
.............................................................................78...........................................................................................................................................219...........................................................................................
SizePerfect hitTotal NormPerfect NormSRR038860(GSM458543)
MM426. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189784SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040037(GSM532922)
G243T. (cervix)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040036(GSM532921)
G243N. (cervix)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR189785SRR038855(GSM458538)
D10. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR189786TAX577589(Rovira)
total RNA. (breast)		SRR038863(GSM458546)
MM603. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR038856(GSM458539)
D11. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
....................................................................................................................................................................................................................................................................................TGAAGTGCAAAGCAGTATG................. 192.000.00-------1.00--------------1.00---------------
................................................................................................................................................................................................................................GGGCTCAGTGACTGCATG...................................................................... 1812.002.00--2.00-----------------------------------
...................................................................................................................................................................................................................................GCAGTCACTGAGCCCTTA................................................................... 181.000.00------------------------------1.00-------
........................................................................................................................................................................................................................................ATACAGGAGGGCTCAGTG.............................................................. 1811.001.00--1.00-----------------------------------
..............................................................................................................................................................................GGTGGCCATGGCCTGCCG........................................................................................................................ 181.000.00---------------------1.00----------------
.........................................................................................................................................................................................................................................ACTGAGCCCTCCTGTACTAG........................................................... 201.000.00--------------------1.00-----------------
...................................................................................................................................................................................................................................................................................GTGAAGTGCAAAGCAGAT................... 181.000.00-------1.00------------------------------
................................................................................................................................................................................................................................AGGGCTCAGTGACTGCATG..................................................................... 1911.001.00--1.00-----------------------------------
.................................................................................................................................................................................................................................GAGGGCTCAGTGACTGCAT.................................................................... 1911.001.00--1.00-----------------------------------
..................................................................................................................................................................................................................................GAGGGCTCAGTGACTGCA.................................................................... 1811.001.00--1.00-----------------------------------
.............................................................................................................................................................................................................................................CCCAGCACCTGCAGCAGTGCATACAGGAGGGCT.......................................... 3311.001.00-----------------1.00--------------------