ID: uc002rah.2_intron_5_0_chr2_10267097_f
GENE: (6)
chr2:10267047-10267263+


(2)
AGO2.ip 		(9)
B-CELL 		(3)
BREAST 		(17)
CELL-LINE 		(2)
CERVIX 		(4)
HELA 		(1)
LIVER 		(1)
OTHER 		(6)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GAAGGCAGACTGGGCCTTGCGCTGGATTGGGGACAAAGAGGCTACCTATGGTAAGGAGACCCTTGCCCCTACTTAAACCTGAGCTTCATTTTCCAAGTAATGTTACTGGATTTTTGGCCCTTGAATACCAACTCACTAGAATCATGTTGGTGTTAACTCCTAAATAGGTGAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATTTTCTTTTCCGGT
................................................................(((....((((....))))........(((.((((....))))))).....)))...................................................................................................
................................................................65..............................................................................145......................................................................
SizePerfect hitTotal NormPerfect NormSRR343334DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR343336SRR040009(GSM532894)
G727T. (cervix)		SRR343335SRR343337SRR189784SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189786SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		TAX577746(Rovira)
total RNA. (breast)		GSM359188(GSM359188)
HepG2_2pM_2. (cell line)		SRR189787SRR029129(GSM416758)
SW480. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
...........................................................................................................................AATACCAACTCACTACAG............................................................................1823.000.006.00-6.00-7.004.00---------------------------------------------
...........................................................................................................................AATACCAACTCACTACAGA...........................................................................1915.000.006.00-3.00-2.004.00---------------------------------------------
...................................................................................................ATGTTACTGGATTTTTGGCCCTTGAATACCAACTCACTAGAATCATGTTGGTGTTAACTCCTAAATAG..................................................6817.007.00-7.00-------------------------------------------------
.....................CTGGATTGGGGACAAAGAGGCTA.............................................................................................................................................................................2324.004.00-----------3.50--------0.50------------------------------
.........................................................................................TTTCCAAGTAATGTTACTGGATTTTTGGCCCTTGAATACCAACTCACTAGAATCATGTTGGTGTTAACTCCTAAATAG..................................................7814.004.00-4.00-------------------------------------------------
..........................................................................................................................................................................AACGTGTTGTAGCCTTTGC............................1923.503.50-0.50-----------3.00-------------------------------------
..............................................................................................................................................................................TGTTGTAGCCTTTGCTGCAGTGGAAGG................2713.003.00---------------------2.001.00----------------------------
.........................................................................................................CTGGATTTTTGGCCCAGGG.............................................................................................193.000.00---2.00----------------------------------1.00------------
.........................................................................................................CTGGATTTTTGGCCCATGG.............................................................................................192.000.00---2.00-----------------------------------------------
........................GATTGGGGACAAAGAGGCTACCTAC........................................................................................................................................................................252.000.00----------2.00----------------------------------------
........ACTGGGCCTTGCGCTGGATTGGGGAC.......................................................................................................................................................................................2612.002.00---------2.00-----------------------------------------
.....................................................................................................GTTACTGGATTTTTGGC...................................................................................................1712.002.00-------------------2.00-------------------------------
.........................................................................................................CTGGATTTTTGGCCCGTGG.............................................................................................192.000.00---2.00-----------------------------------------------
..............................................................................................................................................CATGTTGGTGTTAACTC..........................................................1712.002.00------------------2.00--------------------------------
..................................................................................................AATGTTACTGGATTTTTGGCCCTTGAATACCAACTCACTAGAATCATGTTGGTGTTAACTCCTAAATAG..................................................6912.002.00-----------------2.00---------------------------------
...................CGCTGGATTGGGGACAAA....................................................................................................................................................................................1821.501.50-----------------------1.50---------------------------
......................TGGATTGGGGACAAAGAGGCT..............................................................................................................................................................................2121.501.50---------------0.50---------0.50---------------0.50---------
......................TGGATTGGGGACAAAGAGGCTACCTA.........................................................................................................................................................................2621.501.50--------------1.00-----------------------------0.50------
........................................................................................................................................................................TGAACGTGTTGTAGCCTT...............................1821.501.50-------1.50-------------------------------------------
.............................GGGACAAAGAGGCTACCTA.........................................................................................................................................................................1931.331.33-------0.67-------0.33--------------------------------0.33--
................................................................................................................................................................................................AGTGGAAGGCATTTTCTTTTCCGGC251.000.00--------1.00------------------------------------------
....................GCTGGATTGGGGACAAAG...................................................................................................................................................................................1821.001.00-----------------------------------1.00---------------
..........................................................................................................................................................................................................ATTTTCTTTTCCGGTGC171.000.00------1.00--------------------------------------------
........................GATTGGGGACAAAGAGGCTA.............................................................................................................................................................................2021.001.00-------0.50--------0.50----------------------------------
.........CTGGGCCTTGCGCTGGATTGGGG.........................................................................................................................................................................................2311.001.00------------------------1.00--------------------------
.........................................................................................................CTGGATTTTTGGCCCTGTGG............................................................................................201.000.00---1.00-----------------------------------------------
.....................................................................TACTTAAACCTGAGCCAAA.................................................................................................................................191.000.00------1.00--------------------------------------------
..AGGCAGACTGGGCCTTGCGCTGGATTGGGGAC.......................................................................................................................................................................................3211.001.00--------1.00------------------------------------------
....GCAGACTGGGCCTTGCGC...................................................................................................................................................................................................1811.001.00---------------1.00-----------------------------------
..AGGCAGACTGGGCCTTGCG....................................................................................................................................................................................................1911.001.00-------1.00-------------------------------------------
......................................................................................................TTACTGGATTTTTGGAAAT................................................................................................191.000.00------------------------------------1.00--------------
.........................ATTGGGGACAAAGAGGCTACCTAC........................................................................................................................................................................241.000.00------1.00--------------------------------------------
.........................ATTGGGGACAAAGAGGCTACCTAA........................................................................................................................................................................241.000.00------1.00--------------------------------------------
.AAGGCAGACTGGGCCTTGCGCTGGA...............................................................................................................................................................................................2511.001.00--------1.00------------------------------------------
..AGGCAGACTGGGCCTTGCGCTG.................................................................................................................................................................................................2211.001.00-------------------------------------1.00-------------
................................................................................................................................................................................................AGTGGAAGGCATTTTCTTTTCCGAT251.000.00--------1.00------------------------------------------
................................................................................................................................................................................TTGTAGCCTTTGCTGCAGTGGAAGGC...............2611.001.00--------------1.00------------------------------------
.........................ATTGGGGACAAAGAGGCTACCTACG.......................................................................................................................................................................251.000.00----------1.00----------------------------------------
...........................TGGGGACAAAGAGGCTACCC..........................................................................................................................................................................201.000.00------------------------------1.00--------------------
.........................ATTGGGGACAAAGAGGCTACCC..........................................................................................................................................................................221.000.00------1.00--------------------------------------------
..........................................................................................................................................................................AACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATTT...........3611.001.00-----------------------------1.00---------------------
..........................................................................................................................GAATACCAACTCACTAGAATCATG.......................................................................2411.001.00---------------------------------1.00-----------------
...............CTTGCGCTGGATTGGGGCG.......................................................................................................................................................................................191.000.00------------1.00--------------------------------------
..........TGGGCCTTGCGCTGGATTGGGGATTT.....................................................................................................................................................................................261.000.00-------------------------1.00-------------------------
......................................................................................................................................................................GGTGAACGTGTTGTAGCC.................................1821.001.00-------0.50-------------------------------0.50-----------
......AGACTGGGCCTTGCGCTGGATCGG...........................................................................................................................................................................................241.000.00----------1.00----------------------------------------
..........................................................................................................TGGATTTTTGGCCCTCGTC............................................................................................191.000.00---1.00-----------------------------------------------
...................CGCTGGATTGGGGACAAAGAGGCTAACC..........................................................................................................................................................................281.000.00---------1.00-----------------------------------------
.........................................................................................................................................................................................TTGCTGCAGTGGAAGGCATTTTCTTTCCGG..301.000.00--------1.00------------------------------------------
............................................................................................................................................ATCATGTTGGTGTTAACTCCTAAATAG..................................................2711.001.00-------------------------------1.00-------------------
........................GATTGGGGACAAAGAGGC...............................................................................................................................................................................1821.001.00--------------------------1.00------------------------
.........CTGGGCCTTGCGCTGGATTGGGGACA......................................................................................................................................................................................2611.001.00----------------------------------1.00----------------
.................................................................................................................................................GTTGGTGTTAACTCCTAAATAG..................................................2211.001.00--------------------------------1.00------------------
......................................................................................................................................................................GGTGAACGTGTTGTAGCCTT...............................2021.001.00-------0.50----------------------------------0.50--------
.........................................................................................................CTGGATTTTTGGCCCTGGCA............................................................................................201.000.00---1.00-----------------------------------------------
...........................................................................................................................................................................ACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCA..............3211.001.00---------1.00-----------------------------------------
...GGCAGACTGGGCCTTGCG....................................................................................................................................................................................................1811.001.00----------------1.00----------------------------------
............................GGGGACAAAGAGGCTACCTAT........................................................................................................................................................................2130.670.67------0.33-----0.33--------------------------------------
........................GATTGGGGACAAAGAGGCT..............................................................................................................................................................................1920.500.50------------0.50--------------------------------------
......................TGGATTGGGGACAAAGAGGC...............................................................................................................................................................................2020.500.50---------------------------0.50-----------------------
..........TGGGCCTTGCGCTGGATTGGGGAC.......................................................................................................................................................................................2420.500.50---------0.50-----------------------------------------
............GGCCTTGCGCTGGATTGGGGACA......................................................................................................................................................................................2320.500.50----------------------------------------0.50----------
...............CTTGCGCTGGATTGGGGACAAAGAGG................................................................................................................................................................................2620.500.50---------------------------0.50-----------------------
.......................GGATTGGGGACAAAGAGGCTACCT..........................................................................................................................................................................2420.500.50--------------------0.50------------------------------
......................TGGATTGGGGACAAAGAGGCTAC............................................................................................................................................................................2320.500.50--------------0.50------------------------------------
........................GATTGGGGACAAAGAGGCTACCTATGG......................................................................................................................................................................2720.500.50------------------------0.50--------------------------
...................CGCTGGATTGGGGACAAAGAGGCTACC...........................................................................................................................................................................2720.500.50------------0.50--------------------------------------
......................TGGATTGGGGACAAAGAG.................................................................................................................................................................................1820.500.50-------------------------------------------0.50-------
.....................CTGGATTGGGGACAAAGAGGCTAC............................................................................................................................................................................2420.500.50------------0.50--------------------------------------
.................TGCGCTGGATTGGGGACAAAGAGGCTA.............................................................................................................................................................................2720.500.50---------------0.50-----------------------------------
......................TGGATTGGGGACAAAGAGGCTACC...........................................................................................................................................................................2420.500.50--------------0.50------------------------------------
........................................................................................................................................................................TGAACGTGTTGTAGCCTTAA.............................2020.501.50-------0.50-------------------------------------------
.....................CTGGATTGGGGACAAAGAGGCTACCTATG.......................................................................................................................................................................2920.500.50-----------------------------------------------0.50---
.....................CTGGATTGGGGACAAAGAGG................................................................................................................................................................................2020.500.50---------------0.50-----------------------------------
..............CCTTGCGCTGGATTGGGGACAAAGAGG................................................................................................................................................................................2720.500.50--------------------0.50------------------------------
....................GCTGGATTGGGGACAAAGAGGCT..............................................................................................................................................................................2320.500.50--------------------0.50------------------------------
...................CGCTGGATTGGGGACAAAGAGGCT..............................................................................................................................................................................2420.500.50------------0.50--------------------------------------
..............................................................................................................................................................................TGTTGTAGCCTTTGCTGCAGTGGAAG.................2620.500.50----------------------------------------------0.50----
.....................CTGGATTGGGGACAAAGAGGC...............................................................................................................................................................................2120.500.50----------------------0.50----------------------------
......................TGGATTGGGGACAAAGAGG................................................................................................................................................................................1920.500.50---------------------------------------------0.50-----
.........................ATTGGGGACAAAGAGGCTACCTATG.......................................................................................................................................................................2530.330.33------0.33--------------------------------------------
.............................GGGACAAAGAGGCTACCTACG.......................................................................................................................................................................2130.331.33------0.33--------------------------------------------
.........................ATTGGGGACAAAGAGGCT..............................................................................................................................................................................1830.330.33-------0.33-------------------------------------------
..........................TTGGGGACAAAGAGGCTAACTA.........................................................................................................................................................................2230.330.33-------------------------------------------------0.33-
.........................ATTGGGGACAAAGAGGCTAC............................................................................................................................................................................2030.330.33----------------0.33----------------------------------
..........................TTGGGGACAAAGAGGCTA.............................................................................................................................................................................1830.330.33----------------0.33----------------------------------
...........................TGGGGACAAAGAGGCTACCT..........................................................................................................................................................................2030.330.33--------------------------0.33------------------------
...........................TGGGGACAAAGAGGCTACCTA.........................................................................................................................................................................2130.330.33---------------------------------------0.33-----------
..........................TTGGGGACAAAGAGGCTACCTAT........................................................................................................................................................................2330.330.33--------------------------------------------------0.33
...........................TGGGGACAAAGAGGCTACCTAT........................................................................................................................................................................2230.330.33----------------------------------------0.33----------

Antisense strand
GAAGGCAGACTGGGCCTTGCGCTGGATTGGGGACAAAGAGGCTACCTATGGTAAGGAGACCCTTGCCCCTACTTAAACCTGAGCTTCATTTTCCAAGTAATGTTACTGGATTTTTGGCCCTTGAATACCAACTCACTAGAATCATGTTGGTGTTAACTCCTAAATAGGTGAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATTTTCTTTTCCGGT
................................................................(((....((((....))))........(((.((((....))))))).....)))...................................................................................................
................................................................65..............................................................................145......................................................................
SizePerfect hitTotal NormPerfect NormSRR343334DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR343336SRR040009(GSM532894)
G727T. (cervix)		SRR343335SRR343337SRR189784SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189786SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		TAX577746(Rovira)
total RNA. (breast)		GSM359188(GSM359188)
HepG2_2pM_2. (cell line)		SRR189787SRR029129(GSM416758)
SW480. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
..................................AAAGAGGCTACCTATCCGT.................................................................................................................................................................... 191.000.00----------------------------1.00----------------------