ID: uc002qvw.2_intron_9_0_chr2_253116_r.5p
GENE: (1)
chr2:259885-260134-


(2)
BRAIN
(3)
BREAST
(10)
CELL-LINE
(4)
OTHER
(3)
SKIN
(1)
XRN.ip

Sense strand
CGCAATAGGAATCAATTGAAGCATACATCAAAATGCAGACAGTAGTATTGGTGAGTATTAATGTTATAGATGCTTTTTATCCTTCATATTTTCATATCTGTACTTTTTCCTGTATTTTACAATGTATTTGTACGTTGTACAAATAATTGCTGATCATGTAAAAATATAGAAATATAGAAATTTTGTTGCCATACTTGGGTCTTTTCCACTATGAAATTGAAAAAAAATTCTATAATTCCTGGTTCTTTTA
................................................................................................((((((...(((.(((((((.(((((((((....))))))))).......((((.......)))).))))))))))))))))..........(((....)))....................................................
......................................................................................87...............................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR029128(GSM416757)
H520. (cell line)
SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR189784GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189786SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR189785SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
.............................................................................................................................................................................ATAGAAATTTTGTTGCTACT.........................................................2034.000.0018.004.005.003.004.00-----------------
..............................................................................................................................................................................TAGAAATTTTGTTGCTACT.........................................................1930.000.009.0017.00-3.00-------------1.00----
...........................................................................................TCATATCTGTACTTTTCTA............................................................................................................................................193.000.00-----3.00----------------
........................................................................CTTTTTATCCTTCATATTTTCATATCCG......................................................................................................................................................282.000.00--------1.001.00------------
................................ATGCAGACAGTAGTATTG........................................................................................................................................................................................................1812.002.00---------------1.00---1.00--
.....................................GACAGTAGTATTGGTGGT...................................................................................................................................................................................................181.000.00------------------1.00---
..................................................GTGAGTATTAATGTTATAGA....................................................................................................................................................................................2011.001.00----------1.00-----------
............................CAAAATGCAGACAGTCCAG...........................................................................................................................................................................................................191.000.00-----------1.00----------
....ATAGGAATCAATTGAAGC....................................................................................................................................................................................................................................1811.001.00-------------1.00--------
.................................TGCAGACAGTAGTATTG........................................................................................................................................................................................................1711.001.00----------------1.00-----
................................ATGCAGACAGTAGTATTC........................................................................................................................................................................................................181.000.00--------------------1.00-
...AATAGGAATCAATTGAAGCATACA...............................................................................................................................................................................................................................2411.001.00--------------1.00-------
.............................................................................................................................................................................ATAGAAATTTTGTTGCTGCT.........................................................201.000.00--1.00-------------------
........................................................................CTTTTTATCCTTCATATTTTCATATCTG......................................................................................................................................................2811.001.00--------1.00-------------
....................................AGACAGTAGTATTGGTGAGTA.................................................................................................................................................................................................2111.001.00------1.00---------------
............................................GTATTGGTGAGTATTATATA..........................................................................................................................................................................................201.000.00------1.00---------------
....................................AGACAGTAGTATTGGTG.....................................................................................................................................................................................................1720.500.50------0.50---------------
..............................AAATGCAGACAGTAGTAT..........................................................................................................................................................................................................1820.500.50---------------------0.50

Antisense strand
CGCAATAGGAATCAATTGAAGCATACATCAAAATGCAGACAGTAGTATTGGTGAGTATTAATGTTATAGATGCTTTTTATCCTTCATATTTTCATATCTGTACTTTTTCCTGTATTTTACAATGTATTTGTACGTTGTACAAATAATTGCTGATCATGTAAAAATATAGAAATATAGAAATTTTGTTGCCATACTTGGGTCTTTTCCACTATGAAATTGAAAAAAAATTCTATAATTCCTGGTTCTTTTA
................................................................................................((((((...(((.(((((((.(((((((((....))))))))).......((((.......)))).))))))))))))))))..........(((....)))....................................................
......................................................................................87...............................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR029128(GSM416757)
H520. (cell line)
SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR189784GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189786SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR189785SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
..................................................................................................................................................................................................................ATGAAATTGAAAAAAATCTG.................... 201.000.00---------1.00------------
.............................................................................................................................................................GTAAAAATATAGAAATATAGATC...................................................................... 231.000.00------------1.00---------
..................................GCAGACAGTAGTATTGGTTTT................................................................................................................................................................................................... 211.000.00-------1.00--------------
...............................ACCAATACTACTGTCTGCATT...................................................................................................................................................................................................... 2111.001.00-------1.00--------------