ID: uc002qtg.1_intron_4_0_chr19_59059081_f
GENE: TRIM28(5)
chr19:59059031-59059208+


(4)
AGO2.ip 		(5)
B-CELL 		(1)
BRAIN 		(10)
BREAST 		(25)
CELL-LINE 		(4)
CERVIX 		(5)
HEART 		(3)
HELA 		(1)
KIDNEY 		(5)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(23)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GGGGACAAACATGCAACATTGCAGAAGAGCACCAAGGAGGTTCGCAGCTCGTAAGTGTGGGTTCTGGGGCTGTGGGGGTGGCCCAGGGCAGCAAGACCCTACCTAGCCTGACCTGCTGTGTCCCCTAGAATCCGCCAGGTGTCTGACGTACAGAAGCGTGTGCAAGTGGATGTCAAGA
........................................................(((((((...(((((((((((.(((((...)))..))...))))))..))))))))))))..............................................................
..................................................51...........................................................................128................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189784DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR040011(GSM532896)
G529T. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191608(GSM715718)
193genomic small RNA (size selected RNA from . (breast)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR040023(GSM532908)
G575T. (cervix)		SRR189785TAX577741(Rovira)
total RNA. (breast)		SRR040039(GSM532924)
G531T. (cervix)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		TAX577579(Rovira)
total RNA. (breast)		SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR038863(GSM458546)
MM603. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR191572(GSM715682)
66genomic small RNA (size selected RNA from t. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..................................................GTAAGTGTGGGTTCTGGGGCTGTGGGGGTGGCCCAGGGCAGCAAGACCCTACCTAGCCTGACCTGCTGTGTCCCCTAG..................................................78126.0026.0011.00-15.00---------------------------------------------------------------------------------------
.......................................................................................................TAGCCTGACCTGCTGTGTCCCCTAGAA................................................27116.0016.00---4.00--4.001.00-----2.00---1.00--------------1.00------------------1.00----1.00------------------------------1.00--
.......................................................................................................TAGCCTGACCTGCTGTGTCCCCTAGA.................................................26113.0013.00---2.00------1.00--1.00------1.00------1.00-1.00--------1.00----------------1.00-----1.001.00-----1.00----1.00----------------
.......................................GTTCGCAGCTCGTAAGTGTGGGTTCTGGGGCTGTGGGGGTGGCCCAGGGCAGCAAGACCCTACCTAGCCTGACCTGCTGTGTCCCCTAG..................................................8917.007.007.00-----------------------------------------------------------------------------------------
.GGGACAAACATGCAACATCG.............................................................................................................................................................206.000.00-4.00--------------------------------------------------------------1.00------------------------1.00
.............................................................................................................................................TCTGACGTACAGAAGCGTGTGCAAGTGGA........2915.005.00----5.00-------------------------------------------------------------------------------------
........................................................................................................................................AGGTGTCTGACGTACAGAAGC.....................2114.004.00-----3.00---------------------------------------------------------------------------1.00--------
..................................................GTAAGTGTGGGTTCTGGGGCTGTGGGGGTGGCCCAGGGCAGCAAGACCCTACCTAGCCTGACCTGCTGTGTCCCCTAGT.................................................7914.0026.004.00-----------------------------------------------------------------------------------------
..................................................GTAAGTGTGGGTTCTGGGGCTGTGGGGGTGGCCCAGGGCAGCAAGACCCTACCTAGCCTGACCTGCTGTGTCCCC.....................................................7514.004.004.00-----------------------------------------------------------------------------------------
.............................................................................................................................................TCTGACGTACAGAAGCGTGTGC...............2214.004.00------------------2.00--2.00--------------------------------------------------------------------
.......................................................................................................TAGCCTGACCTGCTGTGTCCCCTAGAAG...............................................2813.0016.00---3.00--------------------------------------------------------------------------------------
.GGGACAAACATGCAACACT..............................................................................................................................................................193.000.00-3.00----------------------------------------------------------------------------------------
.........................AGAGCACCAAGGAGGTTCGCATT..................................................................................................................................2313.002.00--------------2.00-------------------------------------------------------------1.00-------------
............................................................................................................................................GTCTGACGTACAGAAGCGTGTG................2213.003.00---3.00--------------------------------------------------------------------------------------
......................................................................................................CTAGCCTGACCTGCTGTGTCCCCTAGA.................................................2712.002.00---------------2.00--------------------------------------------------------------------------
.......................................................................................................................................................AGAAGCGTGTGCAAGTGGATGTC....2312.002.00------------------------------2.00-----------------------------------------------------------
.....................................................................................................................................................ACAGAAGCGTGTGCAAGTGGATGT.....2412.002.00-------------------------2.00----------------------------------------------------------------
......................AGAAGAGCACCAAGGAGGTTCGCAGCT.................................................................................................................................2712.002.00----------1.00-----------------------------------------------------------1.00-------------------
.........................AGAGCACCAAGGAGGTTCGCA....................................................................................................................................2112.002.00-----------------------------------------------------------------1.00-------------1.00----------
.....................................................................................................................................................ACAGAAGCGTGTGCAAGTGGACGTC....2512.002.00---------2.00--------------------------------------------------------------------------------
.............................................................................................................................................TCTGACGTACAGAAGCGTGTGCAAGTGG.........2812.002.00----2.00-------------------------------------------------------------------------------------
.....................................................................................................................................................ACAGAAGCGTGTGCAAGTGGA........2112.002.00--------------------------------------------------1.00---1.00-----------------------------------
........................................................................................................................................AGGTGTCTGACGTACAGAAGCGTGTGCAAGTGG.........3312.002.00-----------1.00----------------------------1.00-------------------------------------------------
.GGGACAAACATGCAACACTG.............................................................................................................................................................202.000.00-2.00----------------------------------------------------------------------------------------
.........................AGAGCACCAAGGAGGTTCGCAGC..................................................................................................................................2312.002.00------------1.00------------------------------------1.00----------------------------------------
.GGGACAAACATGCAACAC...............................................................................................................................................................182.000.00-2.00----------------------------------------------------------------------------------------
...........................................................................................................................................................GCGTGTGCAAGTGGATGT.....1812.002.00-----------------------2.00------------------------------------------------------------------
......................AGAAGAGCACCAAGGAGGTTCGCAG...................................................................................................................................2512.002.00-----2.00------------------------------------------------------------------------------------
.........................................................................................................................................GGTGTCTGACGTACAGAAGCG....................2112.002.00------------------------1.00------------------------------------------1.00----------------------
...........................................................................................................................................................GCGTGTGCAAGTGGATGTCA...2012.002.00------2.00-----------------------------------------------------------------------------------
.GGGACAAACATGCAACATTG.............................................................................................................................................................2012.002.00-2.00----------------------------------------------------------------------------------------
................................................................................................................................................................TGCAAGTGGATGTCAAG.1712.002.00---------2.00--------------------------------------------------------------------------------
..........................................................................................................................................................AGCGTGTGCAAGTGGATGTCAA..2211.001.00-------1.00----------------------------------------------------------------------------------
........................................................................................................................................AGGTGTCTGACGTACAGAAGCGTGTGAAA.............291.000.00-----1.00------------------------------------------------------------------------------------
.........................AGAGCACCAAGGAGGTTCGCAGT..................................................................................................................................2311.001.00--------------------------------1.00---------------------------------------------------------
.........................................TCGCAGCTCGTAAGTAATC......................................................................................................................191.000.00--------1.00---------------------------------------------------------------------------------
.......................................GTTCGCAGCTCGTAAGT..........................................................................................................................1711.001.00-------------------1.00----------------------------------------------------------------------
....................................................................................................................................................TACAGAAGCGTGTGCAAGTGGATGG.....251.000.00----------1.00-------------------------------------------------------------------------------
.........................................................................................................................................GGTGTCTGACGTACAGAAGCGTGTT................251.000.00--------------------------1.00---------------------------------------------------------------
.........................................TCGCAGCTCGTAAGTACTC......................................................................................................................191.000.00--------1.00---------------------------------------------------------------------------------
.............................................................................................................................................TCTGACGTACAGAAGCGTGT.................2011.001.00----------------------------1.00-------------------------------------------------------------
.............................................................................................................................................TCTGACGTACAGAAGCGTG..................1911.001.00------------------------------------------------------------------------1.00-----------------
...........................................................................................................................................TGTCTGACGTACAGAAGC.....................1811.001.00-------------------1.00----------------------------------------------------------------------
..................................................GTAAGTGTGGGTTCTGGGGCTGTGGGGGTGGCCCAGGGCAGCAAGACCCTACCTAGCCTGACCTGCTGTGTCCCCTAGA.................................................7911.001.00--------------------------------------------------------------------------1.00---------------
.......................................................................................................................................CAGGTGTCTGACGTACAGAAGCGTGTGCAAGT...........3211.001.00----1.00-------------------------------------------------------------------------------------
....................................................................................................ACCTAGCCTGACCTGCTGTGTCC.......................................................2311.001.00--------1.00---------------------------------------------------------------------------------
.......................................................................................................................................................AGAAGCGTGTGCAAGTGGA........1911.001.00----------1.00-------------------------------------------------------------------------------
....................GCAGAAGAGCACCAAGGAGGTTCGCAGCTC................................................................................................................................3011.001.00---------------------------------1.00--------------------------------------------------------
..............AACATTGCAGAAGAGCACCAAGGAGGTT........................................................................................................................................2811.001.00----------------------------------------------------------------------------------1.00-------
............................................................................................................................................................CGTGTGCAAGTGGATGTCAA..2011.001.00-------------------------------1.00----------------------------------------------------------
..............................................................................................................ACCTGCTGTGTCCCCTAGAATCCGCCAG........................................2811.001.00------------------------------------------------------------------------------------1.00-----
....................................................AAGTGTGGGTTCTGGGAAA...........................................................................................................191.000.00-------1.00----------------------------------------------------------------------------------
.........................................................................................................................................GGTGTCTGACGTACAGAAGCGT...................2211.001.00-----------------------------------------------1.00------------------------------------------
...............................................................................................................................................TGACGTACAGAAGCGTGTGCAAGTGG.........2611.001.00----1.00-------------------------------------------------------------------------------------
.............................................................................................................................................TCTGACGTACAGAAGCGTGTACA..............2311.001.00-------------------------------------------------------------------------------------1.00----
..........................................................................................................................................................AGCGTGTGCAAGTGGTTGT.....191.000.00---------------------------------------------------------------1.00--------------------------
.......................................................................................................TAGCCTGACCTGCTGTGTCCCCTATAA................................................271.000.00-------1.00----------------------------------------------------------------------------------
.........................AGAGCACCAAGGAGGTTCGC.....................................................................................................................................2011.001.00------------1.00-----------------------------------------------------------------------------
.............................................................................................................................................TCTGACGTACAGAAGCGTGTGCAAG............2511.001.00----------------1.00-------------------------------------------------------------------------
.........................................................................................................................................GGTGTCTGACGTACAGAAGCGTGTGCAAGTGGA........3311.001.00------------------------------------------------1.00-----------------------------------------
.........................AGAGCACCAAGGAGGTTCGCAT...................................................................................................................................2211.002.00--------------------1.00---------------------------------------------------------------------
.............................................................................................................................................TCTGACGTACAGAAGCGTGTGCAAGTGGATGT.....3211.001.00---------------------------------------------1.00--------------------------------------------
......................................................................................................CTAGCCTGACCTGCTGTGTCCCCTAGAA................................................2811.001.00----------------------------------------------------------------------------------------1.00-
...........TGCAACATTGCAGAAGAGCACCAAGGA............................................................................................................................................2711.001.00----1.00-------------------------------------------------------------------------------------
........................AAGAGCACCAAGGAGGTTCGC.....................................................................................................................................2111.001.00-----------------------------------------------------1.00------------------------------------
......................................................................................................................................CCAGGTGTCTGACGTACAGAAGCGTGTGCAAGTGGA........3611.001.00------------------------------------1.00-----------------------------------------------------
.............................................................................................................................................................GTGTGCAAGTGGATGTCA...1811.001.00-----------------------------------------------------------------------------1.00------------
.....................................................AGTGTGGGTTCTGGGGCTG..........................................................................................................1911.001.00-----------------------------------1.00------------------------------------------------------
....................GCAGAAGAGCACCAAGGAGGTTCGCA....................................................................................................................................2611.001.00-----1.00------------------------------------------------------------------------------------
.........................AGAGCACCAAGGAGGTTCGCAG...................................................................................................................................2211.001.00---------------------------------------------------------------------------1.00--------------
.....................................................................................................................................................ACAGAAGCGTGTGCAAGT...........1811.001.00-----------------------------------------------------------1.00------------------------------
...............................................................................................................................................TGACGTACAGAAGCGTGTG................1911.001.00--------------1.00---------------------------------------------------------------------------
......................................................................................................................................................CAGAAGCGTGTGCAAGTGGATGTC....2411.001.00------------------------------------------------------------------------------1.00-----------
..........................................................................................................................................................AGCGTGTGCAAGTGGATGTCA...2111.001.00--------------------------------------------------------------------------------1.00---------
..........................................................................................................CCTGACCTGCTGTGTCCCCTAGA.................................................2311.001.00------------------------------------------------------------1.00-----------------------------
...................................................................................................TACCTAGCCTGACCTGC..............................................................1711.001.00---------------------------------------1.00--------------------------------------------------
.................................................................................................................................ATCCGCCAGGTGTCTGACGTA............................2111.001.00------------------------1.00-----------------------------------------------------------------
.........................AGAGCACCAAGGAGGTTCG......................................................................................................................................1911.001.00------------1.00-----------------------------------------------------------------------------
.............................................................................................................................................TCTGACGTACAGAAGCGTGTG................2111.001.00----------------1.00-------------------------------------------------------------------------
.........................................................................................................................................GGTGTCTGACGTACAGA........................1711.001.00-----------------------------------------1.00------------------------------------------------
.......................................................................................................TAGCCTGACCTGCTGTGTCGAGA....................................................231.000.00----------------------------------------------------------1.00-------------------------------
........................................................................................................................................................GAAGCGTGTGCAAGTGGATGCG....221.000.00------------------------------------------------------------------1.00-----------------------
....................................................................................................ACCTAGCCTGACCTGCTGTGTAC.......................................................231.000.00--------1.00---------------------------------------------------------------------------------
.............CAACATTGCAGAAGAGCACCAA...............................................................................................................................................2211.001.00-----1.00------------------------------------------------------------------------------------
...........................................................................................................CTGACCTGCTGTGTCCCCCTAG.................................................221.000.00-------------------------------------1.00----------------------------------------------------
...................................................................................................................................CCGCCAGGTGTCTGACGTACAGAAGCGTGTG................3111.001.00-----------1.00------------------------------------------------------------------------------
...........TGCAACATTGCAGAAGAGCACCA................................................................................................................................................2311.001.00---------------------------------------------------------1.00--------------------------------
.......................................................................................................TAGCCTGACCTGCTGTGTCCCCTAGTA................................................2711.001.00-----------------------------------------------------------------------1.00------------------
........................................................GTGGGTTCTGGGGCTGTGGGGGTG..................................................................................................2411.001.00--------------------------------------------------------------------------------------1.00---
.GGGACAAACATGCAACATC..............................................................................................................................................................191.000.00-1.00----------------------------------------------------------------------------------------
........................................................................................................................................................GAAGCGTGTGCAAGTGGATGTCA...2311.001.00-------------------------------1.00----------------------------------------------------------
.....................................................................CTGTGGGGGTGGCCCAGG...........................................................................................1811.001.00----------------------------1.00-------------------------------------------------------------
......................AGAAGAGCACCAAGGAGGTGCGC.....................................................................................................................................231.000.00------1.00-----------------------------------------------------------------------------------
.......................................................................................................TAGCCTGACCTGCTGTGTCCCCTAG..................................................2511.001.00-----------------------------1.00------------------------------------------------------------
..............................................................................................................................................CTGACGTACAGAAGCGTGTGCAT.............231.000.00----------------1.00-------------------------------------------------------------------------
.............................................................................................................................................TCTGACGTACAGAAGCGTGTGCAAGTG..........2711.001.00----1.00-------------------------------------------------------------------------------------
.......................................................................................................................................CAGGTGTCTGACGTACAGAAGC.....................2211.001.00-------------------------------------------1.00----------------------------------------------
.......................................................................................................................................CAGGTGTCTGACGTACAGAAGCGTGTG................2711.001.00---------------------------1.00--------------------------------------------------------------
.................................AAGGAGGTTCGCAGCTCAA..............................................................................................................................191.000.00------------------------------------------1.00-----------------------------------------------
..................................................................................................................................................CGTACAGAAGCGTGTGCAAGTGGATGTC....2811.001.00-----------1.00------------------------------------------------------------------------------
......................................................................................................CTAGCCTGACCTGCTGTGTCCCCTAG..................................................2611.001.00------1.00-----------------------------------------------------------------------------------
............................GCACCAAGGAGGTTCGCAG...................................................................................................................................1911.001.00-----------------------------------------------------------------------------------1.00------
.......................................................................................................TAGCCTGACCTGCTGTGTCCCCTAGAAC...............................................2811.0016.00---1.00--------------------------------------------------------------------------------------
..........................................................................................................CCTGACCTGCTGTGTCCCCTAGC.................................................231.000.00----------------------------------------------------1.00-------------------------------------
..........................................................................................................................................GTGTCTGACGTACAGAAGC.....................1911.001.00--------------------------------------------1.00---------------------------------------------
......................................................................................................................................CCAGGTGTCTGACGTACA..........................1811.001.00----------------------1.00-------------------------------------------------------------------
..............................................................................................................ACCTGCTGTGTCCCCAGTG.................................................191.000.00----------------------------------1.00-------------------------------------------------------
..........................................................................................................................................................AGCGTGTGCAAGTGGATGTCAAG.2311.001.00----------------------------------------------1.00-------------------------------------------
..................................................................................................................................TCCGCCAGGTGTCTGACGTACAGAAGC.....................2711.001.00----1.00-------------------------------------------------------------------------------------
......................AGAAGAGCACCAAGGA............................................................................................................................................1630.330.33---------------------------------0.33--------------------------------------------------------
..............................................................TCTGGGGCTGTGGGGGTG..................................................................................................1830.330.33----------------------------------0.33-------------------------------------------------------
......................................................GTGTGGGTTCTGGGGC............................................................................................................1650.200.20-----------------------------------0.20------------------------------------------------------

Antisense strand
GGGGACAAACATGCAACATTGCAGAAGAGCACCAAGGAGGTTCGCAGCTCGTAAGTGTGGGTTCTGGGGCTGTGGGGGTGGCCCAGGGCAGCAAGACCCTACCTAGCCTGACCTGCTGTGTCCCCTAGAATCCGCCAGGTGTCTGACGTACAGAAGCGTGTGCAAGTGGATGTCAAGA
........................................................(((((((...(((((((((((.(((((...)))..))...))))))..))))))))))))..............................................................
..................................................51...........................................................................128................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189784DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR040011(GSM532896)
G529T. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191608(GSM715718)
193genomic small RNA (size selected RNA from . (breast)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR040023(GSM532908)
G575T. (cervix)		SRR189785TAX577741(Rovira)
total RNA. (breast)		SRR040039(GSM532924)
G531T. (cervix)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		TAX577579(Rovira)
total RNA. (breast)		SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR038863(GSM458546)
MM603. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR191572(GSM715682)
66genomic small RNA (size selected RNA from t. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
............................................................GTTCTGGGGCTGTGGTCTG................................................................................................... 191.000.00-----------------1.00------------------------------------------------------------------------