ID: uc002qsf.1_intron_5_0_chr19_58864694_r.3p
GENE: (5)
chr19:58864644-58864893-


(1)
AGO2.ip 		(2)
B-CELL 		(4)
BREAST 		(7)
CELL-LINE 		(3)
CERVIX 		(1)
HEART 		(14)
LIVER 		(1)
OTHER 		(2)
SKIN

Sense strand
GCCCGAGCCACCCCACCGCCCTCCCTTGGGGCCTCATTGCTGCAGACGCTCACCCCAGACACTCACTGCACCGGAGTGAGCGCGACCATCATGTCCATGCTCGTGGTCTTTCTCTTGCTGTGGGGTGAGGCCTCCTGGGGTCTGGGTCCCTGGGGCGGGAGGGGGCGGGAACAGGAGCCTTACGGGGGCTGTCTCCGCAGGTGTCACCTGGGGCCCAGTGACAGAAGCAGCCATATGTGAGTGCAGGGGT
...............................................................(((.(((..((((.((.(((((.(((.......))).))))).)).))))..))).)))................................................................................................................................
.............................................................62...........................................................123.............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM532876(GSM532876)
G547T. (cervix)		GSM359188(GSM359188)
HepG2_2pM_2. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM532874(GSM532874)
G699T. (cervix)		SRR189782SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577741(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189786SRR040032(GSM532917)
G603N. (cervix)		TAX577453(Rovira)
total RNA. (breast)		SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
..................................................................TGCACCGGAGTGAGCGCGACCA..................................................................................................................................................................22113.0013.001.004.00--1.001.002.00-1.00--1.00-1.00---------1.00------------
..................................................................TGCACCGGAGTGAGCGCGAC....................................................................................................................................................................20111.0011.001.002.001.003.002.002.00------------------------------
..................................................................TGCACCGGAGTGAGCGCGACC...................................................................................................................................................................21111.0011.00-2.00-3.002.001.00--2.00--1.00------------------------
.....................................................................ACCGGAGTGAGCGCGACC...................................................................................................................................................................18110.0010.002.00--2.00-4.00-2.00----------------------------
................................................................ACTGCACCGGAGTGAGCGCG......................................................................................................................................................................2018.008.002.00-3.003.00--------------------------------
..................................................................TGCACCGGAGTGAGCGCGACCATCA...............................................................................................................................................................2517.007.001.00-5.00------1.00--------------------------
...................................................................GCACCGGAGTGAGCGCGACC...................................................................................................................................................................2017.007.004.00------2.001.00---------------------------
.................................................................................................................................................................................................................GGGGCCCAGTGACAGAAGCA.....................2017.007.001.001.004.00------1.00--------------------------
................................................................ACTGCACCGGAGTGAGCGCGA.....................................................................................................................................................................2116.006.001.00--5.00--------------------------------
...................................................................GCACCGGAGTGAGCGCGACCA..................................................................................................................................................................2116.006.001.001.00----1.00--2.00---1.00----------------------
................................................................ACTGCACCGGAGTGAGCGCGAC....................................................................................................................................................................2216.006.003.00--1.002.00-------------------------------
..................................................................TGCACCGGAGTGAGCGCG......................................................................................................................................................................1815.005.00---1.00-1.002.001.00----------------------------
................................................................ACTGCACCGGAGTGAGCGCGACC...................................................................................................................................................................2315.005.003.001.00-1.00--------------------------------
................................................................................................................................................................................................................TGGGGCCCAGTGACAGAAGCA.....................2115.005.002.002.001.00---------------------------------
...................................................................GCACCGGAGTGAGCGCGACCAT.................................................................................................................................................................2214.004.003.001.00----------------------------------
..................................................................TGCACCGGAGTGAGCGCGA.....................................................................................................................................................................1914.004.00--1.001.00-1.00-----1.00------------------------
................................................................................................................................................................................................................TGGGGCCCAGTGACAGAAGCAGCCA.................2514.004.00-1.001.00-2.00-------------------------------
.........................................GCAGACGCTCACCCCAGACA.............................................................................................................................................................................................2014.004.004.00-----------------------------------
........................................................................................................................................................................................................................AGTGACAGAAGCAGCCATA...............1914.004.003.001.00----------------------------------
.....................................................................ACCGGAGTGAGCGCGACCATCATG.............................................................................................................................................................2414.004.00--2.00----1.00--1.00-------------------------
...............................................................CACTGCACCGGAGTGAGCGCG......................................................................................................................................................................2113.003.00--3.00---------------------------------
.................................................................CTGCACCGGAGTGAGCGCGA.....................................................................................................................................................................2013.003.001.00---------2.00-------------------------
..................................................................TGCACCGGAGTGAGCGCGACCAT.................................................................................................................................................................2313.003.00----1.001.00-1.00----------------------------
...................................................................GCACCGGAGTGAGCGCGAC....................................................................................................................................................................1913.003.002.00---1.00-------------------------------
.....................................................................ACCGGAGTGAGCGCGACCATC................................................................................................................................................................2113.003.00--1.002.00--------------------------------
......................................................................CCGGAGTGAGCGCGACCAT.................................................................................................................................................................1913.003.00-1.00----2.00-----------------------------
....................................................................CACCGGAGTGAGCGCGACC...................................................................................................................................................................1913.003.001.00---2.00-------------------------------
.................................................................................................................................................................................................................GGGGCCCAGTGACAGAAGCAG....................2112.002.001.00-1.00---------------------------------
................................................................ACTGCACCGGAGTGAGCGCGACCATCA...............................................................................................................................................................2712.002.00-1.00-------1.00--------------------------
..................................................................TGCACCGGAGTGAGCGCGACCATC................................................................................................................................................................2412.002.00---2.00--------------------------------
.........................................GCAGACGCTCACCCCAGACACT...........................................................................................................................................................................................2212.002.00-2.00----------------------------------
........................................TGCAGACGCTCACCCCAGACACT...........................................................................................................................................................................................2312.002.00-1.00----1.00-----------------------------
....................................................................................ACCATCATGTCCATGCTCGT..................................................................................................................................................2012.002.002.00-----------------------------------
..................................................................TGCACCGGAGTGAGCGCGACCATA................................................................................................................................................................2412.003.00--1.00---1.00-----------------------------
................................CTCATTGCTGCAGACGCTCACCCCAGACACTCA.........................................................................................................................................................................................3312.002.00------------1.00--1.00--------------------
....................................................................CACCGGAGTGAGCGCGACCA..................................................................................................................................................................2012.002.00-2.00----------------------------------
...................................................................GCACCGGAGTGAGCGCGACCATA................................................................................................................................................................2312.004.001.001.00----------------------------------
...................................................................GCACCGGAGTGAGCGCGACCATC................................................................................................................................................................2312.002.002.00-----------------------------------
.......................................................................................................................................................................................................................CAGTGACAGAAGCAGCCATA...............2012.002.001.00-1.00---------------------------------
.................................................................CTGCACCGGAGTGAGCGCG......................................................................................................................................................................1912.002.001.00----1.00------------------------------
.................................................................CTGCACCGGAGTGAGCGCGACCATA................................................................................................................................................................252.000.001.001.00----------------------------------
................................................................................................................................................................................................................TGGGGCCCAGTGACAGAAGC......................2012.002.001.00---1.00-------------------------------
.....................................................................ACCGGAGTGAGCGCGACCA..................................................................................................................................................................1912.002.00--2.00---------------------------------
........................................................AGACACTCACTGCACCGGAGTGAGCGCGACCATCAT..............................................................................................................................................................3612.002.00------------1.00--1.00--------------------
................................................................ACTGCACCGGAGTGAGCGCGACCA..................................................................................................................................................................2412.002.00-1.001.00---------------------------------
................................................................................................................................................................................................................TGGGGCCCAGTGACAGAAGCAGCC..................2412.002.001.001.00----------------------------------
................................................................ACTGCACCGGAGTGAGCGCGACCAT.................................................................................................................................................................2512.002.001.00----1.00------------------------------
...............................................................CACTGCACCGGAGTGAGCGCGACC...................................................................................................................................................................2411.001.00--1.00---------------------------------
..................................................................................................................................................................................................................GGGCCCAGTGACAGAAGCAGCCA.................2311.001.00-1.00----------------------------------
.........................................GCAGACGCTCACCCCAGACAC............................................................................................................................................................................................2111.001.00-1.00----------------------------------
.................................................................................................................................................................................................................GGGGCCCAGTGACAGAAG.......................1811.001.00--1.00---------------------------------
.....................................TGCTGCAGACGCTCACCCCAGAC..............................................................................................................................................................................................2311.001.001.00-----------------------------------
..............................................................TCACTGCACCGGAGTGAGCGCGA.....................................................................................................................................................................2311.001.00--1.00---------------------------------
.......................................................................................................................................................................................................................CAGTGACAGAAGCAGCCA.................1811.001.001.00-----------------------------------
.....................................................................................................CGTGGTCTTTCTCTTGCT...................................................................................................................................1811.001.00--1.00---------------------------------
.....................................................................ACCGGAGTGAGCGCGACCAT.................................................................................................................................................................2011.001.00--------1.00---------------------------
..................................................................TGCACCGGAGTGAGCGCGACCATCAT..............................................................................................................................................................2611.001.00-1.00----------------------------------
...................................................................GCACCGGAGTGAGCGCGATA...................................................................................................................................................................201.000.001.00-----------------------------------
.....................................TGCTGCAGACGCTCACCCCAGA...............................................................................................................................................................................................2211.001.00-------1.00----------------------------
................................................................................................ATGCTCGTGGTCTTTCTCTTG.....................................................................................................................................2111.001.001.00-----------------------------------
...................................................................GCACCGGAGTGAGCGCGACCATCA...............................................................................................................................................................2411.001.001.00-----------------------------------
...................................ATTGCTGCAGACGCTCACCCCAGAC..............................................................................................................................................................................................2511.001.001.00-----------------------------------
..............................................................................AGCGCGACCATCATGTCCATG.......................................................................................................................................................2111.001.00----------1.00-------------------------
............................................................................................................................................................................................................................ACAGAAGCAGCCATATTGGT..........201.000.00------------------------1.00-----------
................................................................ACTGCACCGGAGTGAGCGCGACCATCATGT............................................................................................................................................................3011.001.00------------------1.00-----------------
................................................................................................................................................................................................................TGGGGCCCAGTGACAGAAG.......................1911.001.00--1.00---------------------------------
..........................................................................................................................................................GCGGGAGGGGGCGGG.................................................................................1501.001.00----------------------------1.00-------
...................................ATTGCTGCAGACGCTCACCCCAGA...............................................................................................................................................................................................2411.001.001.00-----------------------------------
..............................................................................................................................................................................................................CCTGGGGCCCAGTGACAGAAGCA.....................2311.001.001.00-----------------------------------
.....................................................................ACCGGAGTGAGCGCGCCC...................................................................................................................................................................181.000.00---1.00--------------------------------
.................................TCATTGCTGCAGACGCTCACC....................................................................................................................................................................................................2111.001.001.00-----------------------------------
.................................................................CTGCACCGGAGTGAGCGCGAC....................................................................................................................................................................2111.001.001.00-----------------------------------
.....................................................................ACCGGAGTGAGCGCGACCATCAT..............................................................................................................................................................2311.001.00---1.00--------------------------------
.............................................................CTCACTGCACCGGAGTGAGCGCGACC...................................................................................................................................................................2611.001.00-1.00----------------------------------
..................................................................TGCACCGGAGTGAGCGCGACCATCATGT............................................................................................................................................................2811.001.00-1.00----------------------------------
.........................................................................................................................................................................................................................GTGACAGAAGCAGCCATATT.............201.000.001.00-----------------------------------
.....................................................................ACCGGAGTGAGCGCGACCATTT...............................................................................................................................................................2211.001.00-------1.00----------------------------
....................................TTGCTGCAGACGCTCACCCCAGAC..............................................................................................................................................................................................2411.001.001.00-----------------------------------
.......................................................................CGGAGTGAGCGCGACCATC................................................................................................................................................................1911.001.00--------1.00---------------------------
.....................................................................ACCGGAGTGAGCGCGACCATCATA.............................................................................................................................................................2411.001.00--1.00---------------------------------
................................................................ACTGCACCGGAGTGAGCGCGTCGT..................................................................................................................................................................2411.008.00---------1.00--------------------------
................................................................................................................................................................................................................TGGGGCCCAGTGACAGAAGCAG....................2211.001.00--1.00---------------------------------
.........................................................................................................................................................................................................................GTGACAGAAGCAGCCATATTTT...........221.000.001.00-----------------------------------
...........................................................................................................................................................................................................................GACAGAAGCAGCCATATTTTA..........211.000.001.00-----------------------------------
.............................................................................................................................................................GGAGGGGGCGGGAACAGGATGAT......................................................................231.000.00-----------------1.00------------------
......................................................................................................................................................TGGGGCGGGAGGGGGCGTGGT...............................................................................211.000.00-------------------------------1.00----
.......................................CTGCAGACGCTCACCCCAGACA.............................................................................................................................................................................................2211.001.00-1.00----------------------------------
........................................................................................................................................................................................................................AGTGACAGAAGCAGCCAT................1811.001.00--1.00---------------------------------
.......................................................................................................................................................................................................................CAGTGACAGAAGCAGGCAT................191.000.00--1.00---------------------------------
......................................................................CCGGAGTGAGCGCGACCATCATATA...........................................................................................................................................................251.000.001.00-----------------------------------
............................................................................................................................................................................................................CACCTGGGGCCCAGTGACAGAAGCAG....................2611.001.00--1.00---------------------------------
................................................................................................................................................................................................................TGGGGCCCAGTGACAGAAGCAGC...................2311.001.00----1.00-------------------------------
......................................GCTGCAGACGCTCACCCCAGACA.............................................................................................................................................................................................2311.001.00-1.00----------------------------------
......................................................................CCGGAGTGAGCGCGACCA..................................................................................................................................................................1811.001.00-1.00----------------------------------
...................................ATTGCTGCAGACGCTCACCCCAGACA.............................................................................................................................................................................................2611.001.00-1.00----------------------------------
................................................................ACTGCACCGGAGTGAGCG........................................................................................................................................................................1811.001.00---1.00--------------------------------
............................................................................................................................................TCTGGGTCCCTGGGGCGG............................................................................................1811.001.00--------------------------------1.00---
......................................................................................................................................................TGGGGCGGGAGGGGGTGTA.................................................................................191.000.00--------------------1.00---------------
................................................................ACTGCACCGGAGTGAGCGC.......................................................................................................................................................................1911.001.00-----1.00------------------------------
....................................................................CACCGGAGTGAGCGCGAC....................................................................................................................................................................1811.001.00-1.00----------------------------------
...................................................ACCCCAGACACTCACTGCA....................................................................................................................................................................................1911.001.00--------1.00---------------------------
.....................................................................ACCGGAGTGAGCGCGACCATCT...............................................................................................................................................................2211.003.00----------1.00-------------------------
.............................................................................................................................................................GGAGGGGGCGGGAACAGGAGGG.......................................................................221.000.00---------------------1.00--------------
.......................................................................................................................................................................................................GGTGTCACCTGGGGCCCAGTGACAGAAGCA.....................3011.001.00-1.00----------------------------------
.........................................GCAGACGCTCACCCCAGACACTCA.........................................................................................................................................................................................2411.001.00-1.00----------------------------------
.................................................................CTGCACCGGAGTGAGCGCGACCATCATG.............................................................................................................................................................2811.001.00-1.00----------------------------------
............................................GACGCTCACCCCAGACACT...........................................................................................................................................................................................1911.001.001.00-----------------------------------
..................................................................................................................................................................................................CCGCAGGTGTCACCTGTAT.....................................191.000.00------------------------------1.00-----
...................................ATTGCTGCAGACGCTCACC....................................................................................................................................................................................................1911.001.00------1.00-----------------------------
............................................................................................................................................................................................................................ACAGAAGCAGCCATATTTT...........191.000.00-1.00----------------------------------
........................................................................GGAGTGAGCGCGACCATC................................................................................................................................................................1811.001.00-1.00----------------------------------
...................................ATTGCTGCAGACGCTCACCCC..................................................................................................................................................................................................2111.001.00----1.00-------------------------------
.....................................................................ACCGGAGTGAGCGCGACCATCA...............................................................................................................................................................2211.001.00--1.00---------------------------------
..........................................................................................................................................................................................................................TGACAGAAGCAGCCATATTT............201.000.00--1.00---------------------------------
.................................................................................................................................................................................................................GGGGCCCAGTGACAGAAGCAGCA..................231.000.00------1.00-----------------------------
...................................................................GCACCGGAGTGAGCGCGACCATCAT..............................................................................................................................................................2511.001.00----1.00-------------------------------
..................................................................................................................................................................................................................GGGCCCAGTGACAGAAGCA.....................1920.500.50---------------------------------0.50--

Antisense strand
GCCCGAGCCACCCCACCGCCCTCCCTTGGGGCCTCATTGCTGCAGACGCTCACCCCAGACACTCACTGCACCGGAGTGAGCGCGACCATCATGTCCATGCTCGTGGTCTTTCTCTTGCTGTGGGGTGAGGCCTCCTGGGGTCTGGGTCCCTGGGGCGGGAGGGGGCGGGAACAGGAGCCTTACGGGGGCTGTCTCCGCAGGTGTCACCTGGGGCCCAGTGACAGAAGCAGCCATATGTGAGTGCAGGGGT
...............................................................(((.(((..((((.((.(((((.(((.......))).))))).)).))))..))).)))................................................................................................................................
.............................................................62...........................................................123.............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM532876(GSM532876)
G547T. (cervix)		GSM359188(GSM359188)
HepG2_2pM_2. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM532874(GSM532874)
G699T. (cervix)		SRR189782SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577741(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189786SRR040032(GSM532917)
G603N. (cervix)		TAX577453(Rovira)
total RNA. (breast)		SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
.................................TCATTGCTGCAGACGCTCACAAG.................................................................................................................................................................................................. 232.000.00--------------2.00---------------------
.........ACCCCACCGCCCTCCCTA............................................................................................................................................................................................................................... 181.000.00---------------------------1.00--------
........CACCCCACCGCCCTCCGTA............................................................................................................................................................................................................................... 191.000.00----------------------1.00-------------
...........................................................................................................................................................CGGGAGGGGGCGGGATGG............................................................................. 181.000.00-----------------------------1.00------
........................................................................................................................................................................................................ACTGGGCCCCAGGTGACAC............................... 1911.001.00----------------1.00-------------------
...................................................................................................................AGACCCCAGGAGGCCTCACCCCACAGCA........................................................................................................... 2811.001.001.00-----------------------------------
....................................................................................ACCATCATGTCCATGCTT.................................................................................................................................................... 181.000.00--------------------------1.00---------
.......................................................GTCGCGCTCACTCCGGTGCAGTGAGTGTCTG.................................................................................................................................................................... 3111.001.00-------------------1.00----------------
.................................................................CTGCACCGGAGTGAGCGCGACCATCGAG............................................................................................................................................................. 281.000.00-------------------------1.00----------
...............................................GAGTGTCTGGGGTGAGC.......................................................................................................................................................................................... 1720.500.50----------------0.50-------------------
............................................................................................................CCCACAGCAAGAGAAA.............................................................................................................................. 1660.170.17----------------------------------0.17-
..........AGGGAGGGCGGTGGGG................................................................................................................................................................................................................................ 1690.110.11-----------------------------------0.11