ID: uc002qmd.3_intron_3_0_chr19_56372914_f
GENE: (4)
chr19:56372864-56373407+


(1)
AGO1.ip
(4)
B-CELL
(8)
BREAST
(11)
CELL-LINE
(1)
HELA
(1)
KIDNEY
(2)
LIVER
(4)
OTHER
(6)
SKIN
(3)
UTERUS

Sense strand
ACCTGGTGTAACCAGCTGAGGCATCCCAGCTGTCGCCTTCAGAAGCTTGGGTGAGTTGAGAATCGACTTCGACTCGAGTATGTCACGGAGATGACCTATTCATCTCACCTCTAGCTTTCAGTCGAGGCTAACTGCACAAGCAAAGAATTAACATCCAGAGCAGTTGCTCAACCTCAGCACTTACAGACATCTCATGCAGATCATTCTTCATCATAGGGGTTGTTCTGTGCGTTGTAGGGTGTTAAGATGCATCCCTGGTCTCTACCCTCTAGATCCTAATAGCATCCCCTTGTCCAGATAACCAAAATAGTGTCCAGACACTGCCAGCTGTCCCTTGTGGGGGCAAAATCTCTCAAGTTGAGAACTACTGAGCTGTGTCATTGGGCTGTGAAATCAGAGAATGAGTTCATGATGGATGATGAGAGACAAACACAGGTGTGCAGGCTGTGCTCCCATTAGATGAAACTCATCCAAAATTTTCTTTGTTTTTGCAGAATAAATAACGTTTCCTTTTCTGGCCAGAGTGTTCTGCTCTTTGAGGTGC
....................................................................................................................................................................................................................................................................((((.....)))).....(((((......((((....))))......((((((....))))))...)))))(((....)))...........................................................................................................................................................................................................
.................................................................................................................................................................................................................................................................258................................................................................341.........................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR189787TAX577740(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR189784SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
TAX577741(Rovira)
total RNA. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
TAX577453(Rovira)
total RNA. (breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
TAX577744(Rovira)
total RNA. (breast)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................................................................................................................................................................................................................................TACCCTCTAGATCCTAATTTGT....................................................................................................................................................................................................................................................................2231.000.007.004.00-3.001.001.002.001.00--2.001.002.00-1.00---1.001.00-1.001.00------1.00--1.00-------
......................................................................................................................................................................................................................................................................TACCCTCTAGATCCTAATT.......................................................................................................................................................................................................................................................................195.000.002.00---1.00--------1.00-1.00------------------------
......................................................................................................................................................................................................................................................................TACCCTCTAGATCCTAATTTCT....................................................................................................................................................................................................................................................................224.000.004.00---------------------------------------
......................................................................................................................................................................................................................................................................TACCCTCTAGATCCTAATCTGT....................................................................................................................................................................................................................................................................223.000.002.00-1.00-------------------------------------
......................................................................................................................................................................................................................................................................TACCCTCTAGATCCTAATCTCT....................................................................................................................................................................................................................................................................222.000.00--2.00-------------------------------------
......................................................................................................................................................................................................................................................................TACCCTCTAGATCCTAATTCGT....................................................................................................................................................................................................................................................................222.000.00--1.00---------------------------1.00---------
......................................................................................................................................................................................................................................................................TACCCTCTAGATCCTAATTTG.....................................................................................................................................................................................................................................................................212.000.00-------1.00-----1.00--------------------------
......................................................................................................................................................................................................................................................................TACCCTCTAGATCCTAATTTGA....................................................................................................................................................................................................................................................................222.000.00-1.00--1.00-----------------------------------
......................................................................................................................................................................................................................................................................TACCCTCTAGATCCTAATTTC.....................................................................................................................................................................................................................................................................212.000.002.00---------------------------------------
......................................................................................................................................................................................................................................................................TACCCTCTAGATCCTAATTTGG....................................................................................................................................................................................................................................................................222.000.001.001.00--------------------------------------
......................................................................................................................................................................................................................................................................TACCCTCTAGATCCTAATATGT....................................................................................................................................................................................................................................................................222.000.00--------2.00-------------------------------
...........................................................................................................................................................................................................................................................................................................................AGACACTGCCAGCTGTCCAGTC...............................................................................................................................................................................................................222.000.00---------2.00------------------------------
......................................................................................................................................................................................................................................................................TACCCTCTAGATCCTAATGTC.....................................................................................................................................................................................................................................................................212.000.002.00---------------------------------------
......................................................................................................................................................................................................................................................................TACCCTCTAGATCCTAATGTG.....................................................................................................................................................................................................................................................................212.000.002.00---------------------------------------
......................................................................................................................................................................................................................................................................TACCCTCTAGATCCTAATCG......................................................................................................................................................................................................................................................................201.000.001.00---------------------------------------
......................................................................................................................................................................................................................................................................TACCCTCTAGATCCTAATTGT.....................................................................................................................................................................................................................................................................211.000.001.00---------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAATTTTCTTTGTGCGC......................................................191.000.00-------------------------------------1.00--
...................................CCTTCAGAAGCTTGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................161.000.00-----------------1.00----------------------
......................................................................................................................................................................................................................................................................TACCCTCTAGATCCTAATGTT.....................................................................................................................................................................................................................................................................211.000.001.00---------------------------------------
......................................................................................................................................................................................................................................................................TACCCTCTAGATCCTAATGTCT....................................................................................................................................................................................................................................................................221.000.001.00---------------------------------------
......................................................................................................................................................................................................................................................................TACCCTCTAGATCCTAATGTGT....................................................................................................................................................................................................................................................................221.000.001.00---------------------------------------
......................................................................................................................................................................................................................................................................TACCCTCTAGATCCTAATGTTG....................................................................................................................................................................................................................................................................221.000.001.00---------------------------------------
......................................................................................................................................................................................................................................................................TACCCTCTAGATCCTAATTTT.....................................................................................................................................................................................................................................................................211.000.001.00---------------------------------------
......................................................................................................................................................................................................................................................................TACCCTCTAGATCCTAATAGGA....................................................................................................................................................................................................................................................................221.000.00--------------------------1.00-------------
.....................................................................................................................................................................................................................................................................CTACCCTCTAGATCCTAATTTGT....................................................................................................................................................................................................................................................................231.000.00-1.00--------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCTGTGCTCCCATTAGATG..................................................................................2211.001.00----------------------------------1.00-----
......................................................................................................................................................................................................................................................................TACCCTCTAGATCCTAATGCCG....................................................................................................................................................................................................................................................................221.000.00--1.00-------------------------------------
......................................................................................................................................................................................................................................................................TACCCTCTAGATCCTAATGGG.....................................................................................................................................................................................................................................................................211.000.001.00---------------------------------------
.......................................................................................................................................................................................................................................................................ACCCTCTAGATCCTAATTTGA....................................................................................................................................................................................................................................................................211.000.001.00---------------------------------------
......................................................................................................................................................................................................................................................................TACCCTCTAGATCCTAATATC.....................................................................................................................................................................................................................................................................211.000.001.00---------------------------------------
.......................................................................................................................................................................................................................................................................ACCCTCTAGATCCTAATTTG.....................................................................................................................................................................................................................................................................201.000.001.00---------------------------------------
.....................................................................................................................................................................................................................................................................................................................................AGCTGTCCCTTGTGGGGGGAAC.....................................................................................................................................................................................................221.000.00---------------------------1.00------------
...........................................................................................................................................................................................................................TTGTTCTGTGCGTTGGCTG..................................................................................................................................................................................................................................................................................................................191.000.00------------------------1.00---------------
......................................................................................................................................................................................................................................................................TACCCTCTAGATCCTATT........................................................................................................................................................................................................................................................................181.000.001.00---------------------------------------
......................................................................................................................................................................................................................................................................TACCCTCTAGATCCTAATCTCG....................................................................................................................................................................................................................................................................221.000.00--1.00-------------------------------------
......................................................................................................................................................................................................................................................................TACCCTCTAGATCCTAATTTTT....................................................................................................................................................................................................................................................................221.000.00------------------------------------1.00---
............................................................................................................................................................................................................................................................................................................................................................................................TTGGGCTGTGAAATCTG...................................................................................................................................................171.000.00-----------------------------------1.00----
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACACAGGTGTGCAGG....................................................................................................1820.500.50--------------------------------------0.50-
................................................................................................................................................................................................................................CTGTGCGTTGTAGGGT................................................................................................................................................................................................................................................................................................................1660.170.17---------------------------------------0.17

Antisense strand
ACCTGGTGTAACCAGCTGAGGCATCCCAGCTGTCGCCTTCAGAAGCTTGGGTGAGTTGAGAATCGACTTCGACTCGAGTATGTCACGGAGATGACCTATTCATCTCACCTCTAGCTTTCAGTCGAGGCTAACTGCACAAGCAAAGAATTAACATCCAGAGCAGTTGCTCAACCTCAGCACTTACAGACATCTCATGCAGATCATTCTTCATCATAGGGGTTGTTCTGTGCGTTGTAGGGTGTTAAGATGCATCCCTGGTCTCTACCCTCTAGATCCTAATAGCATCCCCTTGTCCAGATAACCAAAATAGTGTCCAGACACTGCCAGCTGTCCCTTGTGGGGGCAAAATCTCTCAAGTTGAGAACTACTGAGCTGTGTCATTGGGCTGTGAAATCAGAGAATGAGTTCATGATGGATGATGAGAGACAAACACAGGTGTGCAGGCTGTGCTCCCATTAGATGAAACTCATCCAAAATTTTCTTTGTTTTTGCAGAATAAATAACGTTTCCTTTTCTGGCCAGAGTGTTCTGCTCTTTGAGGTGC
....................................................................................................................................................................................................................................................................((((.....)))).....(((((......((((....))))......((((((....))))))...)))))(((....)))...........................................................................................................................................................................................................
.................................................................................................................................................................................................................................................................258................................................................................341.........................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR189787TAX577740(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR189784SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
TAX577741(Rovira)
total RNA. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
TAX577453(Rovira)
total RNA. (breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
TAX577744(Rovira)
total RNA. (breast)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAGTGTTCTGCTAAAG....... 192.000.00-----------------------1.00-1.00--------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCAGAATAAATAATACC..................................... 201.000.00-----1.00----------------------------------
..................................................................................................................................................ATTAACATCCAGAGCAATA........................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00---1.00------------------------------------
......................................................................................................................................................................................................GATCATTCTTCATCATAGAGA..................................................................................................................................................................................................................................................................................................................................... 211.000.00----------------1.00-----------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAGTGTTCTGCTAAA........ 181.000.00----------------------------1.00-----------
.........................................................................................................................................................TCCAGAGCAGTTGCTGCT..................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00--------------------1.00-------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCAGAGTGTTCTGCGTG......... 201.000.00-------------------------------1.00--------
......................................................................................................................................................................................................................................................................................................................TGTCCAGACACTGCCAGCTTTA.................................................................................................................................................................................................................... 221.000.00-----------1.00----------------------------
....................................................................................................CATCTCACCTCTAGCGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00---------------------------------1.00------