ID: uc002qlt.2_intron_4_0_chr19_56172556_f.5p
GENE: (5)
chr19:56172506-56172755+


(1)
AGO2.ip
(3)
B-CELL
(1)
BRAIN
(7)
BREAST
(6)
CELL-LINE
(13)
CERVIX
(3)
HEART
(3)
LIVER
(3)
OTHER
(24)
SKIN

Sense strand
GACAAGCCCGGCGCCTCTACGTGGGCAACATCCCCTTTGGCATCACTGAGGTACTGCCCTCCCCTGCCCCCTACCCTCTCCCTTGTCCCTCTACCCCGTTCCTCCCCTTCCCTCCATTCCCTTTCCCCAACCTGCACGGGTCAGACTCTGCTCCTGCAAGACCCCCCGGCCCCCTCCCAGACGGACCGATGGAGTTGAGCCAGCCAGGGGCCGGGCTGGGGGTGGCCCTCCCTCCCTCCTCTTCCCCTCT
...................................................................................................................................(((...(((((....(((((....))).))......))))).....)))......................................................................
..............................................................................................................111......................................................................184................................................................
SizePerfect hitTotal NormPerfect NormSRR040012(GSM532897)
G648N. (cervix)
SRR040022(GSM532907)
G575N. (cervix)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR040032(GSM532917)
G603N. (cervix)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784GSM532889(GSM532889)
G576N. (cervix)
SRR040040(GSM532925)
G612N. (cervix)
SRR040016(GSM532901)
G645N. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM532887(GSM532887)
G761N. (cervix)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR040034(GSM532919)
G001N. (cervix)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
GSM532877(GSM532877)
G691N. (cervix)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR040008(GSM532893)
G727N. (cervix)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR343335SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)
SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
GSM532879(GSM532879)
G659N. (cervix)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
.................................................................................................................................................................CCCCCCGGCCCCCTCCGCC......................................................................1918.000.006.001.00-3.001.00------2.001.001.00---------------1.00------------1.00------1.00-------------
.................................................................................................................................................................CCCCCCGGCCCCCTCCGC.......................................................................1815.000.006.002.00--1.00----------------2.00-----1.00---1.00-----1.00---------------1.00---------
.................................................................................................................................................................CCCCCCGGCCCCCTCCGCCC.....................................................................208.000.002.001.00-1.00---1.00-----1.00------------------1.00------------1.00-----------------
..................................................................................................................................................................CCCCCGGCCCCCTCCGCC......................................................................186.000.00--------1.001.00---------1.00----------1.00-------------1.00----------------1.00-
..................................................................................................................................................................CCCCCGGCCCCCTCCGC.......................................................................175.000.00-------2.00-----------1.00--------------1.001.00---------------------------
..................................................................................................................................................................CCCCCGGCCCCCTCCGCCC.....................................................................195.000.001.00-------1.00---------------------------1.00--1.00-------1.00---------------
...................................................................................................................................................................CCCCGGCCCCCTCCCTCTC....................................................................194.000.00--4.00------------------------------------------------------------
.................................................................................................................................................................CCCCCCGGCCCCCTCCCCCC.....................................................................203.000.001.00---2.00----------------------------------------------------------
................................CCCTTTGGCATCACTGAG........................................................................................................................................................................................................1813.003.00------------------2.00------------------------------------1.00-------
.............CCTCTACGTGGGCAACATC..........................................................................................................................................................................................................................1912.002.00--------------------2.00------------------------------------------
............................................................................................ACCCCGTTCCTCCCC...............................................................................................................................................1512.002.00---------------2.00-----------------------------------------------
.........................CAACATCCCCTTTGGCATCACCG..........................................................................................................................................................................................................232.000.00----------2.00----------------------------------------------------
..................................................................................................................................................................................AGACGGACCGATGGAGTTG.....................................................1912.002.00----------------2.00----------------------------------------------
..............CTCTACGTGGGCAACATC..........................................................................................................................................................................................................................1811.001.00-----------------------------------------1.00---------------------
................................................................................................................................................................ACCCCCCGGCCCCCTCCCCCCC....................................................................221.000.00------------1.00--------------------------------------------------
..............................................................................................................................................AGACTCTGCTCCTGCAAGAC........................................................................................2011.001.00----------------------1.00----------------------------------------
...................................................................................................................ATTCCCTTTCCCCAACCTG....................................................................................................................1911.001.00--------------------------1.00------------------------------------
.....................................................................................................................................GCACGGGTCAGACTCTGAAA.................................................................................................201.000.00---------1.00-----------------------------------------------------
.................................................................................................................................................................CCCCCCGGCCCCCTCCCACGGC...................................................................221.000.00------------------------------------------------------------1.00--
................................................................................................................................................................ACCCCCCGGCCCCCTCCGCCC.....................................................................211.000.00-1.00-------------------------------------------------------------
.........................CAACATCCCCTTTGGCATCACTG..........................................................................................................................................................................................................2311.001.00------------------------------------------------1.00--------------
.................................................................................................................................................................CCCCCCGGCCCCCTCCCCCCC....................................................................211.000.00-1.00-------------------------------------------------------------
...................................TTTGGCATCACTGAGGAGG....................................................................................................................................................................................................191.000.00---------------------------------------------------------1.00-----
....................GTGGGCAACATCCCCTTTGGCATC..............................................................................................................................................................................................................2411.001.00----------------------------------------------------------1.00----
...........................ACATCCCCTTTGGCATCACTGAG........................................................................................................................................................................................................2311.001.00----------------------------------------1.00----------------------
.................................................................................................................................................................CCCCCCGGCCCCCTCTGCC......................................................................191.000.00--------------------------------------------------------1.00------
.....................................................................................................................................................................................CGGACCGATGGAGTTGAGCCAGCCAGG..........................................2711.001.00------------------------1.00--------------------------------------
.................................................................................................................................................................CCCCCCGGCCCCCTCCGCCT.....................................................................201.000.00------------------------------------------------------1.00--------
.........................................................................................................................................GGGTCAGACTCTGCTCCTGCAAGAC........................................................................................2511.001.00----------------------1.00----------------------------------------
..............................................................................................................................CCAACCTGCACGGGTCAG..........................................................................................................1811.001.00----------------------------------------------------1.00----------
...............TCTACGTGGGCAACATCCCCTTTGGCATC..............................................................................................................................................................................................................2911.001.00-----------------1.00---------------------------------------------
.........................................................CCTCCCCTGCCCCCTACC...............................................................................................................................................................................1850.400.40-----------------------0.20--------------------------------------0.20
.....................................................................CCTACCCTCTCCCTTGT....................................................................................................................................................................1730.330.33--------0.33------------------------------------------------------

Antisense strand
GACAAGCCCGGCGCCTCTACGTGGGCAACATCCCCTTTGGCATCACTGAGGTACTGCCCTCCCCTGCCCCCTACCCTCTCCCTTGTCCCTCTACCCCGTTCCTCCCCTTCCCTCCATTCCCTTTCCCCAACCTGCACGGGTCAGACTCTGCTCCTGCAAGACCCCCCGGCCCCCTCCCAGACGGACCGATGGAGTTGAGCCAGCCAGGGGCCGGGCTGGGGGTGGCCCTCCCTCCCTCCTCTTCCCCTCT
...................................................................................................................................(((...(((((....(((((....))).))......))))).....)))......................................................................
..............................................................................................................111......................................................................184................................................................
SizePerfect hitTotal NormPerfect NormSRR040012(GSM532897)
G648N. (cervix)
SRR040022(GSM532907)
G575N. (cervix)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR040032(GSM532917)
G603N. (cervix)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784GSM532889(GSM532889)
G576N. (cervix)
SRR040040(GSM532925)
G612N. (cervix)
SRR040016(GSM532901)
G645N. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM532887(GSM532887)
G761N. (cervix)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR040034(GSM532919)
G001N. (cervix)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
GSM532877(GSM532877)
G691N. (cervix)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR040008(GSM532893)
G727N. (cervix)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR343335SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)
SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
GSM532879(GSM532879)
G659N. (cervix)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
....................................................................................................................................................................................................GAGCCAGCCAGGGGCGCCA................................... 195.000.00-----2.001.00----------------1.00--------------1.00------------------------
....................................................................................................................................................................................................GAGCCAGCCAGGGGCCGCCA.................................. 204.000.00------1.00---------------------1.00----1.00-------------------------1.00---
....................................................................................................................................................................................................GAGCCAGCCAGGGGCCGGCCA................................. 213.000.00------1.00------------------------------------1.00--1.00----------------
.........................................................................CCCTCTCCCTTGTCCCTCTAGC........................................................................................................................................................... 221.000.00--------------------------------------------------1.00------------
................................................................................CCTTGTCCCTCTACCCTAGA...................................................................................................................................................... 201.000.00--------------1.00------------------------------------------------
....................................................................................................................................................................................................GAGCCAGCCAGGGGCGCCC................................... 191.000.00-----1.00---------------------------------------------------------
............................................................................................................................................................................CCTCCCAGACGGACCGC............................................................. 171.000.00--------------1.00------------------------------------------------
.......................................................AGGGTAGGGGGCAGGGGAGGGC............................................................................................................................................................................. 2211.001.00---------------------------------------------------1.00-----------
............................................................................................................................................................CAAGACCCCCCGGCCA.............................................................................. 161.000.00-----------------1.00---------------------------------------------
.......................................................................TACCCTCTCCCTTGTCTG................................................................................................................................................................. 181.000.00-------------------------1.00-------------------------------------