ID: uc002qii.3_intron_6_0_chr19_55449610_r.3p
GENE: (4)
chr19:55449560-55449809-


(2)
AGO1.ip
(6)
AGO2.ip
(2)
AGO3.ip
(8)
B-CELL
(2)
BRAIN
(15)
BREAST
(37)
CELL-LINE
(5)
CERVIX
(1)
HEART
(5)
HELA
(4)
LIVER
(1)
OTHER
(5)
SKIN
(1)
TESTES
(1)
UTERUS

Sense strand
TTATCTATTATTTTATTTTTTTTGTAAAACTTAAGATCTATACTGGTAGCAAAGCATGTGATGCAATATTGTTTACTATAGACACTGTTTTAGGTTGGTGCAAAAGTAATTGTGGTTTTTGCCATTGAAATGTGGTTTGCAGATGCCCATCTCACCATGCAGGTACTAGTCCTAAGAGATGAACGTGTGTTCTCCTGCAGGTGCACTTACCTAACCATTCCGAACTGGGCTCGGCAGGATCTTCGCTCTC
.....................................................((((....((.((((.((((((...)))))).)))).)).....))))..........(((((....))))).............................................................................................................................
..................................................51.........................................................................126..........................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR189786SRR189787SRR189782SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189784SRR390723(GSM850202)
total small RNA. (cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR029125(GSM416754)
U2OS. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR029124(GSM416753)
HeLa. (hela)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM416733(GSM416733)
HEK293. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM532929(GSM532929)
G702N. (cervix)
SRR189783GSM532871(GSM532871)
G652N. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR191454(GSM715564)
180genomic small RNA (size selected RNA from . (breast)
SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)
SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)
GSM532874(GSM532874)
G699T. (cervix)
SRR191400(GSM715510)
37genomic small RNA (size selected RNA from t. (breast)
SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)
GSM956925PAZD5SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)
SRR189785SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR037938(GSM510476)
293Red. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
TAX577742(Rovira)
total RNA. (breast)
SRR040006(GSM532891)
G601N. (cervix)
SRR029126(GSM416755)
143B. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR553576(SRX182782)
source: Testis. (testes)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR040024(GSM532909)
G613N. (cervix)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
TAX577743(Rovira)
total RNA. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.....................................................................................................AAAAGTAATTGTGGTTTTTGC................................................................................................................................2103156.003156.001388.00354.00270.00272.00256.00253.00195.00150.00-----3.006.002.002.00-----1.00-------1.00---2.00------1.00--------------------------------------------------
......................................................................................................AAAGTAATTGTGGTTTTTGC................................................................................................................................200205.00205.0072.0030.0016.0028.0025.0016.0013.004.00------1.00-----------------------------------------------------------------------------
....................................................................................................CAAAAGTAATTGTGGTTTTTGC................................................................................................................................220189.00189.0015.0038.0038.0041.0043.005.005.00------1.00-1.00--1.00-----------1.00-------------------------------------------------------------
....................................................................................................CAAAAGTAATTGTGGTTTTTG.................................................................................................................................210144.00144.0025.0025.0026.0019.0019.0011.006.0011.00-------1.00---1.00------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTTTTGCC...............................................................................................................................22093.0093.0020.0011.0011.005.0011.005.009.002.00-----4.00-2.00--4.004.00--2.00--2.00---------------1.00--------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTTTTG.................................................................................................................................20055.0055.0018.008.006.006.009.003.001.001.00-----3.00------------------------------------------------------------------------------
....................................................................................................CAAAAGTAATTGTGGTTTTTGATC..............................................................................................................................24034.00144.00-----------34.00--------------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTTCGGC................................................................................................................................21029.005.00--------16.0013.00----------------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTTTTGCCA..............................................................................................................................23023.0023.009.002.002.00-2.003.001.002.00-----------------1.00----1.00-------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTGGCC.................................................................................................................................2022.000.00--------20.002.00----------------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTTTTTCT...............................................................................................................................22015.006.00---------1.00----------2.00------2.00-2.00--2.00--2.00---------------------1.00---1.00----1.00---1.00---------------------
.........................................................................................................GTAATTGTGGTTTTTGC................................................................................................................................17012.0012.005.00-2.001.001.001.001.00----------------------------------------------------------1.00--------------------------
.....................................................................................................AAAAGTAATTGTGGTTGCC..................................................................................................................................199.000.00--------7.00-2.00---------------------------------------------------------------------------------
......................................................................................................AAAGTAATTGTGGTTTTTGCC...............................................................................................................................2109.009.002.001.001.002.00----------2.00-1.00---------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTTTT..................................................................................................................................1906.006.004.00-1.00---1.00-------------------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTT....................................................................................................................................1705.005.001.001.00-1.00-1.001.00-------------------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTTTTGCCAAC............................................................................................................................2504.0023.00-----------------------4.00--------------------------------------------------------------------
.............................................................................................GTTGGTGCAAAAGTAATTGTGGT......................................................................................................................................2304.004.00-1.00-1.00-1.001.00-------------------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTGGCC..................................................................................................................................194.000.00--------3.001.00----------------------------------------------------------------------------------
....................................................................................................CAAAAGTAATTGTGGTTTTTTAA...............................................................................................................................234.000.00---------------------------1.00---------------2.00-------------------------------1.00----------------
...................................................................................................GCAAAAGTAATTGTGGTTTTTG.................................................................................................................................2204.004.001.002.00---1.00--------------------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTTGGCA................................................................................................................................2103.005.00----------1.00-----------------------------------------------1.00-------------------------------1.00-
.....................................................................................................AAAAGTAATTGTGGTTGGC..................................................................................................................................193.000.00--------1.001.001.00---------------------------------------------------------------------------------
........................................................................................................AGTAATTGTGGTTTTTGC................................................................................................................................1803.003.00---------------3.00----------------------------------------------------------------------------
......................................................................................................AAAGTAATTGTGGTTTTTGCCA..............................................................................................................................2203.003.002.00----1.00--------------------------------------------------------------------------------------
..........................................................................................................TAATTGTGGTTTTTGC................................................................................................................................1603.003.00--2.00---1.00-------------------------------------------------------------------------------------
.........................................................................................TTAGGTTGGTGCAAAAGTAGA............................................................................................................................................213.000.00--------------------------------------------2.00-------------------------------------------1.00---
.....................................................................................................AAAAGTAATTGTGGTTTT...................................................................................................................................1803.003.002.00--1.00----------------------------------------------------------------------------------------
.............................................................................................GTTGGTGCAAAAGTAATTGTGGCT.....................................................................................................................................2403.002.00---1.001.001.00--------------------------------------------------------------------------------------
.........................................................................................................GTAATTGTGGTTTTTGCC...............................................................................................................................1803.003.00----1.001.001.00-------------------------------------------------------------------------------------
......................................................................................................AAAGTAATTGTGGTTTTTG.................................................................................................................................1903.003.00--2.00-1.00---------------------------------------------------------------------------------------
....................................................................................................CAAAAGTAATTGTGGTTTCGGT................................................................................................................................223.000.00--------1.002.00----------------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTTTTTAA...............................................................................................................................2203.006.00---------------------------------------1.00--------1.00-----1.00-------------------------------------
.............................................................................................GTTGGTGCAAAAGTAATTGTGGC......................................................................................................................................2303.002.001.00-1.001.00----------------------------------------------------------------------------------------
....CTATTATTTTATTTTTTCG...................................................................................................................................................................................................................................192.000.00----------------------------1.00--------------------1.00------------------------------------------
....................................................................................................CAAAAGTAATTGTGGTTCGT..................................................................................................................................2002.001.00--------2.00-----------------------------------------------------------------------------------
....................................................................................................CAAAAGTAATTGTGGTTTTTGCC...............................................................................................................................2302.002.001.00---------------------1.00---------------------------------------------------------------------
..........................................................TGATGCAATATTGTTTATAG............................................................................................................................................................................202.000.00----------2.00---------------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTGGCA.................................................................................................................................202.000.00--------2.00-----------------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTGC...................................................................................................................................182.000.00--------1.00-1.00---------------------------------------------------------------------------------
.............................................................................................GTTGGTGCAAAAGTAATTGTGG.......................................................................................................................................2202.002.001.00-1.00-----------------------------------------------------------------------------------------
......................................................................................................AAAGTAATTGTGGTTTTTGCCAGA............................................................................................................................2402.003.00---------------------------------1.00-----------1.00----------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTCGCC.................................................................................................................................202.000.00--------1.00-1.00---------------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTTTTGAAAA.............................................................................................................................2402.0055.00--1.00----------------------------1.00------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTGGC...................................................................................................................................182.000.00---------1.00-----------1.00----------------------------------------------------------------------
......................................................................................................AAAGTAATTGTGGTTTGGCA................................................................................................................................2002.001.00--------2.00-----------------------------------------------------------------------------------
......................................................................................................AAAGTAATTGTGGTTTCTTC................................................................................................................................2002.001.00---------------------------------------------------------------1.00--------1.00-------------------
...............................................................................................TGGTGCAAAAGTAATTGTGGTTATG..................................................................................................................................252.000.00-------------------------------2.00------------------------------------------------------------
.........................................................................................TTAGGTTGGTGCAAAAGTAATTGTGGTTTGC..................................................................................................................................312.000.00----------------------------------------2.00---------------------------------------------------
..............................................................................................TTGGTGCAAAAGTAATTGTGGTT.....................................................................................................................................2302.002.00----2.00---------------------------------------------------------------------------------------
......................................................................................................AAAGTAATTGTGGTTTTTGATG..............................................................................................................................2202.003.00-------------------------------------1.001.00-----------------------------------------------------
......................................................................................................AAAGTAATTGTGGTTTTTTCT...............................................................................................................................2102.001.00---------------------------1.00-----------1.00----------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTTCGC.................................................................................................................................2001.005.00--------1.00-----------------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTATCT..................................................................................................................................191.000.00-----------------1.00--------------------------------------------------------------------------
...............................................................................................TGGTGCAAAAGTAATTGTGGT......................................................................................................................................2101.001.00--1.00-----------------------------------------------------------------------------------------
......................................................................................................AAAGTAATTGTGGTTTTT..................................................................................................................................1801.001.001.00-------------------------------------------------------------------------------------------
.....TATTATTTTATTTTTTTTGTTTTA.............................................................................................................................................................................................................................241.000.00----------------------------1.00---------------------------------------------------------------
....CTATTATTTTATTTTTTTTATTG...............................................................................................................................................................................................................................231.000.00----------------------------1.00---------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTGCA..................................................................................................................................191.000.00---------1.00----------------------------------------------------------------------------------
....................................................................................................CAAAAGTAATTGTGGTTTGGT.................................................................................................................................211.000.00---------1.00----------------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTCGCT.................................................................................................................................201.000.00--------1.00-----------------------------------------------------------------------------------
.............................................................................................GTTGGTGCAAAAGTAATGGC.........................................................................................................................................201.000.00-1.00------------------------------------------------------------------------------------------
.............................................................................................GTTGGTGCAAAAGTAATTGTCGA......................................................................................................................................231.000.00---------------------------------------------------------------------------------------1.00----
......................................................................................................AAAGTAATTGTGGTTTTTGGTGT.............................................................................................................................2301.003.00-----------------------------------------------------------1.00--------------------------------
.....................................................................................................AAAAGTAATTGTGGTTCGTT.................................................................................................................................201.000.00--------1.00-----------------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTCTGG.................................................................................................................................201.000.00---------1.00----------------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTGTCG.................................................................................................................................201.000.00----------1.00---------------------------------------------------------------------------------
....................................................................................................CAAAAGTAATTGTGGTTTTTGACTG.............................................................................................................................2501.00144.00-------------------------------------------------------1.00------------------------------------
....................................................................................................CAAAAGTAATTGTGGTTTTTGAGA..............................................................................................................................2401.00144.00-----------------------------------------------------1.00--------------------------------------
............................................................................................................................................................................................................................CGAACTGGGCTCGGCAGGA...........1911.001.00---------------------1.00----------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTTCTTG................................................................................................................................2101.005.00-------------------------------------------------------------------------1.00------------------
..............................................................................................TTGGTGCAAAAGTAATTGTGGT......................................................................................................................................2201.001.00---1.00----------------------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTTTTTTTA..............................................................................................................................2301.006.00------------------------------------1.00-------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTGGAT.................................................................................................................................201.000.00---------1.00----------------------------------------------------------------------------------
..............................................................................................................................................................................................................TTACCTAACCATTCCTTG..........................181.000.00-------------------------------------------------------------------1.00------------------------
....................................................................................................CAAAAGTAATTGTGGTTTCCGT................................................................................................................................221.000.00---------1.00----------------------------------------------------------------------------------
..........................................................................................................................................................................................................................TCCGAACTGGGCTCGGCA..............1811.001.00---------------------1.00----------------------------------------------------------------------
...............................................................................................TGGTGCAAAAGTAATTGTGGTTAGG..................................................................................................................................251.000.00----------------------------------------------1.00---------------------------------------------
....................................................................................................CAAAAGTAATTGTGGTTGC...................................................................................................................................1901.001.00--------1.00-----------------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTTTTCGC...............................................................................................................................2201.006.00---------1.00----------------------------------------------------------------------------------
..................................................................................................................................................................................................................................GGGCTCGGCAGGATCTTCGCT...2111.001.00--------------------------------------------------------------1.00-----------------------------
.....................................................................................................AAAAGTAATTGTGGTTTTTGAT...............................................................................................................................2201.0055.00-----------------------------------------------------------------------------1.00--------------
...............................................................................................TGGTGCAAAAGTAATTGTGG.......................................................................................................................................2001.001.00--1.00-----------------------------------------------------------------------------------------
....................................................................................................CAAAAGTAATTGTGGTT.....................................................................................................................................1701.001.00-1.00------------------------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTTCTG.................................................................................................................................2001.005.00---------------1.00----------------------------------------------------------------------------
......................................................................................................AAAGTAATTGTGGTTT....................................................................................................................................1601.001.00----1.00---------------------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTGTCA.................................................................................................................................201.000.00---------------------------------1.00----------------------------------------------------------
....CTATTATTTTATTTTTCTTG..................................................................................................................................................................................................................................201.000.00-------------------------------------------------------------------------------------------1.00
.....................................................................................................AAAAGTAATTGTGGTTTGGCT................................................................................................................................2101.005.00----------1.00---------------------------------------------------------------------------------
....................................................................................................CAAAAGTAATTGTGGTTTGGTT................................................................................................................................221.000.00---------1.00----------------------------------------------------------------------------------
......................................................................................................AAAGTAATTGTGGTTTTTGAT...............................................................................................................................2101.003.00----------------------------------------------------------------------------------1.00---------
.....................................................................................................AAAAGTAATTGTGGTTTGTAA................................................................................................................................2101.005.00------------------------------------------------------------------------------1.00-------------
......................................................................................................AAAGTAATTGTGGTTTCGGC................................................................................................................................2001.001.00---------1.00----------------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTTTTCTC...............................................................................................................................2201.006.00---------1.00----------------------------------------------------------------------------------
..........................................................................................................................................................................................................................TCCGAACTGGGCTCGGCAGGA...........2111.001.00---------------------------------------------------------------------1.00----------------------
.....................................................................................................AAAAGTAATTGTGGTTTTTTTGC..............................................................................................................................2301.006.00--------1.00-----------------------------------------------------------------------------------
........................................................................................................................................................................................................................ATTCCGAACTGGGCTCGGCA..............2011.001.00---------------------1.00----------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTTTTGCCGA.............................................................................................................................2401.0093.00----------------------------------------------------1.00---------------------------------------
.................................................................................................................................................................................................................................TGGGCTCGGCAGGATCTTCG.....2011.001.00---------------------1.00----------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTTTTCGAC..............................................................................................................................2301.006.00--------------------------------------------------------------------1.00-----------------------
.....................................................................................................AAAAGTAATTGTGGTTTTTTAG...............................................................................................................................2201.006.00--------------------------------1.00-----------------------------------------------------------
....CTATTATTTTATTTTTTTTTTG................................................................................................................................................................................................................................221.000.00--------------------------------------------------------------------------------------1.00-----
.....................................................................................................AAAAGTAATTGTGGTTTGCG.................................................................................................................................2001.005.00--------1.00-----------------------------------------------------------------------------------
.................................................................................................GTGCAAAAGTAATTGTGGTTT....................................................................................................................................2101.001.00------------------------------------------1.00-------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTTTTTAT...............................................................................................................................2201.006.00------------------------1.00-------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTCGGC.................................................................................................................................201.000.00---------1.00----------------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTTAGGC................................................................................................................................2101.005.00----1.00---------------------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTTTAGCT...............................................................................................................................2201.003.00--------1.00-----------------------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTTGCCGA.............................................................................................................................221.000.00--------------------------------------------------------------------------------1.00-----------
.....................................................................................................AAAAGTAATTGTGGTTTCGTC................................................................................................................................2101.005.00------------------------1.00-------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTCGC..................................................................................................................................191.000.00---------1.00----------------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTTCTTC................................................................................................................................2101.005.00----------------------------------------------------------------------------1.00---------------
.....................................................................................................AAAAGTAATTGTGGTTTGTGA................................................................................................................................2101.005.00---1.00----------------------------------------------------------------------------------------
....................................................................................................CAAAAGTAATTGTGGTTCCTG.................................................................................................................................2101.001.00--------1.00-----------------------------------------------------------------------------------
..........................................................................................TAGGTTGGTGCAAAAGTAATGGC.........................................................................................................................................231.000.00----------------1.00---------------------------------------------------------------------------

Antisense strand
TTATCTATTATTTTATTTTTTTTGTAAAACTTAAGATCTATACTGGTAGCAAAGCATGTGATGCAATATTGTTTACTATAGACACTGTTTTAGGTTGGTGCAAAAGTAATTGTGGTTTTTGCCATTGAAATGTGGTTTGCAGATGCCCATCTCACCATGCAGGTACTAGTCCTAAGAGATGAACGTGTGTTCTCCTGCAGGTGCACTTACCTAACCATTCCGAACTGGGCTCGGCAGGATCTTCGCTCTC
.....................................................((((....((.((((.((((((...)))))).)))).)).....))))..........(((((....))))).............................................................................................................................
..................................................51.........................................................................126..........................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR189786SRR189787SRR189782SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189784SRR390723(GSM850202)
total small RNA. (cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR029125(GSM416754)
U2OS. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR029124(GSM416753)
HeLa. (hela)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM416733(GSM416733)
HEK293. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM532929(GSM532929)
G702N. (cervix)
SRR189783GSM532871(GSM532871)
G652N. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR191454(GSM715564)
180genomic small RNA (size selected RNA from . (breast)
SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)
SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)
GSM532874(GSM532874)
G699T. (cervix)
SRR191400(GSM715510)
37genomic small RNA (size selected RNA from t. (breast)
SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)
GSM956925PAZD5SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)
SRR189785SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR037938(GSM510476)
293Red. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
TAX577742(Rovira)
total RNA. (breast)
SRR040006(GSM532891)
G601N. (cervix)
SRR029126(GSM416755)
143B. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR553576(SRX182782)
source: Testis. (testes)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR040024(GSM532909)
G613N. (cervix)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
TAX577743(Rovira)
total RNA. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.......................................................................................................AAGTAATTGTGGTTTTTCTGT.............................................................................................................................. 2136.000.00--------28.007.001.00---------------------------------------------------------------------------------
................................................................................................AAACCACAATTACTTTTGCACC.................................................................................................................................... 22024.0024.003.003.007.002.005.001.002.00-------1.00-----------------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTTGCTGT............................................................................................................................. 2223.000.00--------8.009.001.00-5.00-------------------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTTGC................................................................................................................................ 1914.000.00----------13.00---------------------------------------------1.00-----------------------------------
......................................................................................................AAAGTAATTGTGGTTTTTGCGT.............................................................................................................................. 22014.000.00--------7.002.001.00-4.00-------------------------------------------------------------------------------
......................................................................................................AAAGTAATTGTGGTTTTTCGTA.............................................................................................................................. 22014.000.00--------12.002.00----------------------------------------------------------------------------------
..................................................................................................TGCAAAAGTAATTGTGGTTTTTATC............................................................................................................................... 2512.000.00-----------12.00--------------------------------------------------------------------------------
...................................................................................................AAAAACCACAATTACTTTTGC.................................................................................................................................. 21011.0011.004.002.00-2.002.00--------1.00------------------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTTGCA............................................................................................................................... 2011.000.00--------2.002.006.00----------------------------------------------------------------------1.00----------
...............................................................................................AACCACAATTACTTTTGCACCA..................................................................................................................................... 2209.009.00-3.003.00-1.001.00----------------1.00---------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTGCAC............................................................................................................................... 209.000.00--------2.004.003.00---------------------------------------------------------------------------------
....................................................................................................AAAAACCACAATTACTTTTG.................................................................................................................................. 2009.009.00-2.001.001.004.00-----------1.00---------------------------------------------------------------------------
......................................................................................................AAAGTAATTGTGGTTTTTCGT............................................................................................................................... 2106.000.00--------2.002.001.00------------------------------------------------------------1.00--------------------
................................................................................................AACCACAATTACTTTTGCACC..................................................................................................................................... 2106.006.001.001.00--1.001.00-1.00------1.00-----------------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTTGGC............................................................................................................................... 205.000.00----------3.00-2.00-------------------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTGTAA............................................................................................................................... 205.000.00--------1.00-4.00---------------------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTGCA................................................................................................................................ 195.000.00-----------------5.00--------------------------------------------------------------------------
...............................................................................................ACCACAATTACTTTTGCACCA...................................................................................................................................... 2105.005.00-1.00---1.00--------1.00---1.00------1.00------------------------------------------------------------------
...................................................................................................CAAAAACCACAATTACTTTTGC................................................................................................................................. 2205.005.001.001.00-1.001.001.00--------------------------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTTGGTA.............................................................................................................................. 214.000.00--------4.00-----------------------------------------------------------------------------------
......................................................................................................AAAGTAATTGTGGTTTTCGTA............................................................................................................................... 214.000.00--------4.00-----------------------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTTCGTA.............................................................................................................................. 214.000.00--------4.00-----------------------------------------------------------------------------------
.................................................................................................AAAACCACAATTACTTTTGCAC................................................................................................................................... 2204.004.00-2.00-----------2.00------------------------------------------------------------------------------
..................................................................................................AAAAACCACAATTACTTTTGCA.................................................................................................................................. 2204.004.001.00--1.00---1.00----------------------------------1.00-------------------------------------------------
....................................................................................................CAAAAGTAATTGTGGTTTTTATC............................................................................................................................... 234.000.00-----------4.00--------------------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTTGCAC.............................................................................................................................. 213.000.00--------1.002.00----------------------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTTGTAA.............................................................................................................................. 213.000.00--------2.001.00----------------------------------------------------------------------------------
....................................................................................................CAAAAGTAATTGTGGTTTTTAAA............................................................................................................................... 233.000.00--------------------1.00-----2.00-----------------------------------------------------------------
........................................................................................................AGTAATTGTGGTTTTTGCCATCC........................................................................................................................... 232.000.00----------2.00---------------------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTTGCCG.............................................................................................................................. 212.000.00------------2.00-------------------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTTCCG............................................................................................................................... 202.000.00------------2.00-------------------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTTATGT.............................................................................................................................. 212.000.00--------1.00---------------1.00-------------------------------------------------------------------
.................................................................................................AAACCACAATTACTTTTGCAC.................................................................................................................................... 2102.002.00----------------2.00---------------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTTCCGT.............................................................................................................................. 212.000.00--------1.001.00----------------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTTTTTTA............................................................................................................................... 2202.000.00----------1.00-------------------------------------------------1.00-------------------------------
....................................................................................................CAAAAACCACAATTACTTTTG................................................................................................................................. 2102.002.002.00-------------------------------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTTGCTGA............................................................................................................................. 222.000.00--------1.001.00----------------------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTGCAT............................................................................................................................... 202.000.00--------1.001.00----------------------------------------------------------------------------------
.........................................................................................................GTAATTGTGGTTTTTGCCATTCC.......................................................................................................................... 232.000.00------------2.00-------------------------------------------------------------------------------
......................................................................................................AAAGTAATTGTGGTTTTTATT............................................................................................................................... 2102.000.00----------2.00---------------------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTTGTC............................................................................................................................... 202.000.00----------2.00---------------------------------------------------------------------------------
.................................................................................................GTGCAAAAGTAATTGTGGTTTGGG................................................................................................................................. 2402.000.00-------------------------------------1.001.00-----------------------------------------------------
...............................................................................................TGGTGCAAAAGTAATTGTGGTTCT................................................................................................................................... 242.000.00--------2.00-----------------------------------------------------------------------------------
...................................................................................................GCAAAAGTAATTGTGGTTTTA.................................................................................................................................. 212.000.00--------------------2.00-----------------------------------------------------------------------
......................................................................................................AAAGTAATTGTGGTTTTTCGAA.............................................................................................................................. 2202.000.00---------1.00---------------------------------------------------------------------------1.00------
.......................................................................................................AAGTAATTGTGGTTTTTCGCA.............................................................................................................................. 211.000.00--------1.00-----------------------------------------------------------------------------------
......................................................................................................AAAGTAATTGTGGTTTTTGCGA.............................................................................................................................. 2201.000.00--------1.00-----------------------------------------------------------------------------------
..........................................................................................................TAATTGTGGTTTTTGCCAGTC........................................................................................................................... 211.000.00--------------------------1.00-----------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTCGCA............................................................................................................................... 201.000.00--------1.00-----------------------------------------------------------------------------------
.........................................................................................................GTAATTGTGGTTTTTGCCAGCT........................................................................................................................... 221.000.00----------1.00---------------------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTTGCTGG............................................................................................................................. 221.000.00---------1.00----------------------------------------------------------------------------------
........................................................................................................AGTAATTGTGGTTTTTGCCATCA........................................................................................................................... 231.000.00----------1.00---------------------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTGTT................................................................................................................................ 191.000.00----------1.00---------------------------------------------------------------------------------
.........................................................................................................GTAATTGTGGTTTTTGCCATCCT.......................................................................................................................... 231.000.00--------1.00-----------------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTTTTCAT............................................................................................................................... 2201.000.00------------------------1.00-------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTTCCC............................................................................................................................... 201.000.00----------1.00---------------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTTTTTTAA.............................................................................................................................. 2301.000.00----------------------------------------------------------------1.00---------------------------
....................................................................................................CAAAAGTAATTGTGGTTTTAAA................................................................................................................................ 221.000.00--------------------------------------------------1.00-----------------------------------------
...................................................................................................AAAACCACAATTACTTTTGC................................................................................................................................... 2001.001.001.00-------------------------------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTTGCAT.............................................................................................................................. 211.000.00------------------------------------1.00-------------------------------------------------------
..................................................................................................TGCAAAAGTAATTGTGGTACAG.................................................................................................................................. 221.000.00---------------------------------------------1.00----------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTCGG................................................................................................................................ 191.000.00----------1.00---------------------------------------------------------------------------------
......................................................................................................AAAGTAATTGTGGTTTTTGAGT.............................................................................................................................. 2201.000.00--------1.00-----------------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTTTTAA................................................................................................................................ 2101.000.00------------1.00-------------------------------------------------------------------------------
..................................................................................................TGCAAAAGTAATTGTGGTTTTAT................................................................................................................................. 231.000.00-----------------------------------------------1.00--------------------------------------------
........................................................................................................AGTAATTGTGGTTTTTGCCACC............................................................................................................................ 221.000.00----------1.00---------------------------------------------------------------------------------
.........................................................................................................GTAATTGTGGTTTTTGCTAG............................................................................................................................. 201.000.00----------1.00---------------------------------------------------------------------------------
..............................................................................................AACCACAATTACTTTTGCACCAA..................................................................................................................................... 2301.001.00-----1.00--------------------------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTCG................................................................................................................................. 181.000.00----------1.00---------------------------------------------------------------------------------
.........................................................................................................GTAATTGTGGTTTTTCTTG.............................................................................................................................. 191.000.00----------1.00---------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................CAGGATCTTCGCTCTTCT 181.000.00--------------------------------------------------------------------------1.00-----------------
.......................................................................................................AAGTAATTGTGGTTTGCAC................................................................................................................................ 191.000.00--------1.00-----------------------------------------------------------------------------------
.........................................................................................................GTAATTGTGGTTTTTGCCACC............................................................................................................................ 211.000.00--------------------------1.00-----------------------------------------------------------------
...........................................................................................AGGTTGGTGCAAAAGTAATTCAT........................................................................................................................................ 231.000.00------------------------------------------------------------------------------------1.00-------
...TCTATTATTTTATTTTTTAGTT................................................................................................................................................................................................................................. 221.000.00-------------------------------------------------------------------------------1.00------------
.........................................................................................................GTAATTGTGGTTTTTGGCA.............................................................................................................................. 191.000.00--------1.00-----------------------------------------------------------------------------------
.....................................................................................................AAAAGTAATTGTGGTTTTTTCAT.............................................................................................................................. 2301.000.00-----------------------------1.00--------------------------------------------------------------
........................................................................................................AGTAATTGTGGTTTTTGGA............................................................................................................................... 191.000.00--------1.00-----------------------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTTCGC............................................................................................................................... 201.000.00--------1.00-----------------------------------------------------------------------------------
......................................................................................................AAAGTAATTGTGGTTTTTCGA............................................................................................................................... 2101.000.00---------1.00----------------------------------------------------------------------------------
....................................................................................................CAAAAGTAATTGTGGTAAA................................................................................................................................... 191.000.00-----------------------------------------------------------------------------------1.00--------
.......................................................................................................AAGTAATTGTGGTTTTTGGG............................................................................................................................... 201.000.00----------1.00---------------------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTTGAGG.............................................................................................................................. 211.000.00----------1.00---------------------------------------------------------------------------------
...................................................................................................GCAAAAGTAATTGTGGTTTGCT................................................................................................................................. 221.000.00-----------------------------------------------------------------------------------------1.00--
.......................................................................................................AAGTAATTGTGGTTTTCCG................................................................................................................................ 191.000.00----------1.00---------------------------------------------------------------------------------
......................................................................................................AAAGTAATTGTGGTTTTATGA............................................................................................................................... 211.000.00----------1.00---------------------------------------------------------------------------------
........................................................................................................AGTAATTGTGGTTTTTGGC............................................................................................................................... 191.000.00--------1.00-----------------------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTTCTT............................................................................................................................... 201.000.00----------1.00---------------------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTTGTA............................................................................................................................... 201.000.00--------1.00-----------------------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTTGA................................................................................................................................ 191.000.00----------1.00---------------------------------------------------------------------------------
................................................................................................ACCACAATTACTTTTGCACC...................................................................................................................................... 2001.001.001.00-------------------------------------------------------------------------------------------
......................................................................................................AAAGTAATTGTGGTTTTTAGTA.............................................................................................................................. 2201.000.00------------1.00-------------------------------------------------------------------------------
.............................................................................................................TTGTGGTTTTTGCCATTACTC........................................................................................................................ 211.000.00--------1.00-----------------------------------------------------------------------------------
.......................................................................................................AAGTAATTGTGGTTTTTGCGT.............................................................................................................................. 211.000.00--------1.00-----------------------------------------------------------------------------------
..................................................................................................TGCAAAAGTAATTGTGGTTACAT................................................................................................................................. 231.000.00---------------------------------------------------1.00----------------------------------------