uc002qcs.1_intron_2_0_chr19_54483262

GTCCAAGAGGAACATCATTCTGGGCGCAGGGATCCTGTTCGTGGCAGCAGGTGAGAGGCAGAGGGAGGGGGCGACCGGGGCGGCCCACCTGGGCGCGCACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGTGAGTGCAAGTGCGCGTTCGTGTGTCTGCAAAGCCACCTTGCCCCGAGCACCCCCGGGGGCCCGGAGCCTTCCTAGGCGGTCCCCAAGCTCCATCGCCACCCGCTGGGT
.........................................................((..(((...(((.((.......)).))).)))..((((.((((((((((((((((..((......))..)))))))))))))))).))))..))..................................................................................................
..................................................51....................................................................................................153...............................................................................................

Size

Perfect hit

Total Norm

Perfect Norm

DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)

DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)

DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

SRR207116(GSM721078)
Nuclear RNA. (cell line)

GSM532876(GSM532876)
G547T. (cervix)

SRR037935(GSM510473)
293cand3. (cell line)

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)

DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)

GSM532877(GSM532877)
G691N. (cervix)

SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)

SRR040037(GSM532922)
G243T. (cervix)

SRR189787

SRR040028(GSM532913)
G026N. (cervix)

SRR189783

SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)

SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)

SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)

SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)

SRR189782

SRR037937(GSM510475)
293cand2. (cell line)

SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)

SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)

SRR040012(GSM532897)
G648N. (cervix)

SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)

SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)

SRR060168(GSM565978)
5-8F_nucleus. (cell line)

SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)

SRR029125(GSM416754)
U2OS. (cell line)

SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)

SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)

SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)

................................................................................................................................GCGCGCGCGCGCGTG...........................................................................................................

53.00

16.00

15.00

9.00

8.00

5.00

..................................................................................................................................GCGCGCGCGCGTGAGGTGT.....................................................................................................

1.00

0.00

1.00

...................................................................................................................................CGCGCGCGCGTGAGTGCGCG...................................................................................................

1.00

0.00

1.00

.....................................................AGAGGCAGAGGGAGGGGGGC.................................................................................................................................................................................

1.00

0.00

1.00

..................................................................................................ACGTGTGTGTGTGTGTGTGTGGAC................................................................................................................................

1.00

0.00

1.00

....................................................................................................................................GCGCGCGCGTGAGTGCGC....................................................................................................

1.00

0.00

1.00

...................................................................................................CGTGTGTGTGTGTGTGTGTGTGTCCGT............................................................................................................................

1.00

0.00

1.00

...................................................................................................................TGTGTGTGTGTGTGCGCCTCC..................................................................................................................

1.00

0.00

1.00

.......................................................................................................................................................TGCGCGTTCGTGTGTTAGG................................................................................

1.00

0.00

1.00

.....................................................................................................................................CGCGCGCGTGAGTGC......................................................................................................

1.00

.................................................................................................CACGTGTGTGTGTGTCATG......................................................................................................................................

1.00

0.00

1.00

..............................GATCCTGTTCGTGGCGCCA.........................................................................................................................................................................................................

1.00

0.00

1.00

..................................................................................................................................GCGCGCGCGCGTGAGGTGC.....................................................................................................

1.00

0.00

1.00

...................................................................................................................TGTGTGTGTGTGTGCGCCGG...................................................................................................................

1.00

0.00

1.00

..................................................GTGAGAGGCAGAGGGAGC......................................................................................................................................................................................

1.00

0.00

1.00

...............................ATCCTGTTCGTGGCACCA.........................................................................................................................................................................................................

1.00

0.00

1.00

.....................................................................................................................................CGCGCGCGTGAGTGCGGG...................................................................................................

1.00

..................................................................................................ACGTGTGTGTGTGTGTGTGTGTGTGTGGGG..........................................................................................................................

1.00

0.00

1.00

.....AGAGGAACATCATTCTGGGCGCAGGGATC........................................................................................................................................................................................................................

1.00

.........................................................................................................TGTGTGTGTGTGTGTGTGTGTGTGCGCGGC...................................................................................................................

1.00

0.00

1.00

...............................................................................................................TGTGTGTGTGTGTGTGTGCGCGGCG..................................................................................................................

1.00

0.00

1.00

...............CATTCTGGGCGCAGGG...........................................................................................................................................................................................................................

0.50

................................................................................................................................GCGCGCGCGCGCGTGAG.........................................................................................................

0.33

0.17

................................................................................................................................GCGCGCGCGCGCGTGAGG........................................................................................................

0.17

0.33

0.17

...............................................................................................................................................................................................CCCCCGGGGGCCCGG............................................

0.12

GTCCAAGAGGAACATCATTCTGGGCGCAGGGATCCTGTTCGTGGCAGCAGGTGAGAGGCAGAGGGAGGGGGCGACCGGGGCGGCCCACCTGGGCGCGCACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGTGAGTGCAAGTGCGCGTTCGTGTGTCTGCAAAGCCACCTTGCCCCGAGCACCCCCGGGGGCCCGGAGCCTTCCTAGGCGGTCCCCAAGCTCCATCGCCACCCGCTGGGT .........................................................((..(((...(((.((.......)).))).)))..((((.((((((((((((((((..((......))..)))))))))))))))).))))..)).................................................................................................. ..................................................51....................................................................................................153...............................................................................................	Size	Perfect hit	Total Norm	Perfect Norm	DRR000558(DRX000316) "THP-1 whole cell RNA, after 3 day treatment . (cell line)	DRR000559(DRX000317) "THP-1 whole cell RNA, no treatment". (cell line)	DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line)	DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line)	DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line)	SRR207116(GSM721078) Nuclear RNA. (cell line)	GSM532876(GSM532876) G547T. (cervix)	SRR037935(GSM510473) 293cand3. (cell line)	SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex)	DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela)	GSM532877(GSM532877) G691N. (cervix)	SRR444042(SRX128890) Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)	SRR040037(GSM532922) G243T. (cervix)	SRR189787	SRR040028(GSM532913) G026N. (cervix)	SRR189783	SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line)	SRR330891(SRX091729) tissue: skin psoriatic uninvolveddisease stat. (skin)	SRR553573(SRX182779) source: Cerebellum. (Cerebellum)	SRR330923(SRX091761) tissue: normal skindisease state: normal. (skin)	SRR037876(GSM522374) fibroblasts_cell_culture. (fibroblast)	SRR189782	SRR037937(GSM510475) 293cand2. (cell line)	SRR342900(SRX096796) small RNA seq of Right atrial tissue. (heart)	SRR330877(SRX091715) tissue: skin psoriatic involveddisease state:. (skin)	SRR040012(GSM532897) G648N. (cervix)	SRR330860(SRX091698) tissue: skin psoriatic involveddisease state:. (skin)	SRR444053(SRX128901) Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)	SRR060168(GSM565978) 5-8F_nucleus. (cell line)	SRR330895(SRX091733) tissue: skin psoriatic uninvolveddisease stat. (skin)	SRR326281(GSM769511) "Dicer mRNA was knocked down using siDicer, c. (cell line)	SRR029125(GSM416754) U2OS. (cell line)	SRR330889(SRX091727) tissue: skin psoriatic uninvolveddisease stat. (skin)	SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line)	SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line)	SRR330915(SRX091753) tissue: normal skindisease state: normal. (skin)
......................GCCACGAACAGGATCCCTGCGCC.............................................................................................................................................................................................................	23	1	3.00	3.00	-	-	-	-	-	3.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
............................................................................................................................................................................................GCACCCCCGGGGGCCCGGC...........................................	19		2.00	0.00	-	-	-	-	-	-	-	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
............................................................GAGGGAGGGGGCGACCGTC...........................................................................................................................................................................	19		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
......................................................................GCGACCGGGGCGGCCCTGG.................................................................................................................................................................	19		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-
............................................................................................................................................................................................GCACCCCCGGGGGCCC..............................................	16		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-
.....................................................................................................................................................................................................................GCGATGGAGCTTGGGGACCGCCTAG............	25	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
...............................................................................................................................................................................................CCCCCGGGGGCCCGGGCCG........................................	19	8	1.00	0.00	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
..................................................................................................................................................................................................................TTCCTAGGCGGTCCCTTC......................	18		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
................................................................................................................................................................................................CCCCGGGGGCCCGGAGCCA.......................................	19		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-
..................................................................................................................................................................................................................TTCCTAGGCGGTCCCTACC.....................	19		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
....................................GTTCGTGGCAGCAGGTGT....................................................................................................................................................................................................	18		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..............................CCTCTCACCTGCTGCCACGAACAGGATC................................................................................................................................................................................................	28	1	1.00	1.00	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................................................CGGAGCCTTCCTAGGCGGTT...........................	20		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-
................................................................................................................................................................................................................................CCAAGCTCCATCGCCCTGC.......	19		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................CTCGGGGCAAGGTGGCTT.............................................................	18	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-
..........................................................................................................................................GCGCACTTGCACTCACGC..............................................................................................	18	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
..............................................CCCTCTGCCTCTCACCTGC.........................................................................................................................................................................................	19	3	0.33	0.33	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.33	-	-	-