uc002qcl.2_intron_0_0_chr19_54369672

CCCAGCGGCCGCAGCCAGCCAGGCCGCGCCCGGGACGACTGCAGAGCGCGGTGAGTGAACGCGGCCAGAGGGAGGGACTCAGGCGTCCCAGGTCCCCGCCCTGCCCCTCCCCGGGGGCCCGACATCCCGACCCTCAGCTCCCTCTTTTTCTTTTGGCTCCGGCAGTCCGTTTTAGGGCCGCAGAGCCGCCTTTTAAAAACACACCCTGCATCCCTTCCCTGCCCTGGGGCTTCGGGCCCACCAGCCCCTT
..................................................................(((((((((((((.(((.(((...(((....)))..((((((....))))))..........)))))).)).))))))))))).....(((((..((.((((......)))).)).)))))...............................................................
........................................................57..................................................................................................................................189...........................................................

Size

Perfect hit

Total Norm

Perfect Norm

DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)

DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)

SRR207110(GSM721072)
Nuclear RNA. (cell line)

GSM339996(GSM339996)
hues6Neuron. (cell line)

SRR207111(GSM721073)
Whole cell RNA. (cell line)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

TAX577744(Rovira)
total RNA. (breast)

SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)

SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)

TAX577739(Rovira)
total RNA. (breast)

SRR390723(GSM850202)
total small RNA. (cell line)

SRR060168(GSM565978)
5-8F_nucleus. (cell line)

SRR033728(GSM497073)
MALT (MALT413). (B cell)

SRR029124(GSM416753)
HeLa. (hela)

TAX577580(Rovira)
total RNA. (breast)

SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)

SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)

SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)

SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)

SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)

TAX577741(Rovira)
total RNA. (breast)

SRR207116(GSM721078)
Nuclear RNA. (cell line)

SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)

TAX577745(Rovira)
total RNA. (breast)

SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)

SRR038852(GSM458535)
QF1160MB. (cell line)

RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)

SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)

SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)

SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)

SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)

SRR040030(GSM532915)
G013N. (cervix)

SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)

DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)

SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)

SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)

SRR553575(SRX182781)
source: Kidney. (Kidney)

GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR040028(GSM532913)
G026N. (cervix)

DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

SRR029129(GSM416758)
SW480. (cell line)

SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)

SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)

GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)

SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)

TAX577740(Rovira)
total RNA. (breast)

SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)

SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)

SRR015447(SRR015447)
nuclear small RNAs. (breast)

SRR029127(GSM416756)
A549. (cell line)

SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)

SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)

SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)

GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)

SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)

SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)

SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)

SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)

GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)

SRR015361(GSM380326)
Memory B cells (MM55). (B cell)

SRR037944(GSM510482)
293DcrTN_cand5. (cell line)

SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)

SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)

SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)

SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

GSM359177(GSM359177)
hela_nucl_a. (hela)

SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)

DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR189782

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)

...............................GGGACGACTGCAGAGCGCGGTGAG...................................................................................................................................................................................................

8.00

5.00

1.00

.................................GACGACTGCAGAGCGCGG.......................................................................................................................................................................................................

6.00

5.00

1.00

.............................................................CGGCCAGAGGGAGGGACTCAG........................................................................................................................................................................

5.00

1.00

2.00

1.00

...........................................................CGCGGCCAGAGGGAGGGACTCAGG.......................................................................................................................................................................

5.00

2.00

1.00

..........................................AGAGCGCGGTGAGTGAACGC............................................................................................................................................................................................

4.00

2.00

1.00

.............................................................CGGCCAGAGGGAGGGACT...........................................................................................................................................................................

4.00

1.00

...............................GGGACGACTGCAGAGCGCGG.......................................................................................................................................................................................................

3.00

1.00

....................................................................AGGGAGGGACTCAGGCGTC...................................................................................................................................................................

3.00

2.00

1.00

.............................................................CGGCCAGAGGGAGGGACTCAGG.......................................................................................................................................................................

3.00

1.00

..........................................................ACGCGGCCAGAGGGAGGGACTCAGG.......................................................................................................................................................................

3.00

........................................................................................................................................................................GTTTTAGGGCCGCAGAG.................................................................

3.00

1.00

2.00

............................................AGCGCGGTGAGTGAACGC............................................................................................................................................................................................

2.00

.......................CCGCGCCCGGGACGACTGCAGA.............................................................................................................................................................................................................

2.00

1.00

.............................................................CGGCCAGAGGGAGGGACTCA.........................................................................................................................................................................

2.00

1.00

........................................................................................................................................................................GTTTTAGGGCCGCAGAGC................................................................

2.00

...................................CGACTGCAGAGCGCGGTGAG...................................................................................................................................................................................................

2.00

1.00

..........................................................................................................CTCCCCGGGGGCCCGCTG..............................................................................................................................

2.00

0.00

2.00

............................CCCGGGACGACTGCAGAG............................................................................................................................................................................................................

2.00

1.00

........................................................................................................................................................................................................................................CGGGCCCACCAGCCCGGA

1.00

0.00

1.00

...............................................GCGGTGAGTGAACGCGGCCAGAG....................................................................................................................................................................................

1.00

.................................GACGACTGCAGAGCGCGGTGAGTGAACGCGGC.........................................................................................................................................................................................

1.00

............................CCCGGGACGACTGCAGA.............................................................................................................................................................................................................

1.00

............................CCCGGGACGACTGCAGAGC...........................................................................................................................................................................................................

1.00

........................................................................................................................................................................GTTTTAGGGCCGCAGA..................................................................

1.00

....................................GACTGCAGAGCGCGGTGAG...................................................................................................................................................................................................

1.00

...............................................GCGGTGAGTGAACGCGGCCCGAG....................................................................................................................................................................................

1.00

0.00

1.00

................................................CGGTGAGTGAACGCGGCCAA......................................................................................................................................................................................

1.00

0.00

1.00

...................CAGGCCGCGCCCGGGACGACTGCAGAG............................................................................................................................................................................................................

1.00

.................................................................................................GCCCTGCCCCTCCCCGA........................................................................................................................................

1.00

0.00

1.00

...............................................GCGGTGAGTGAACGCGGCCA.......................................................................................................................................................................................

1.00

....................................................GAGTGAACGCGGCCAGAG....................................................................................................................................................................................

1.00

.............................................................CGGCCAGAGGGAGGGACTCAGGC......................................................................................................................................................................

1.00

...............................GGGACGACTGCAGAGCGCGGTGCTCT.................................................................................................................................................................................................

1.00

0.00

1.00

...............................................................GCCAGAGGGAGGGACTCAGG.......................................................................................................................................................................

1.00

...........................................GAGCGCGGTGAGTGAACGC............................................................................................................................................................................................

1.00

.............................CCGGGACGACTGCAGAGC...........................................................................................................................................................................................................

1.00

............................................................GCGGCCAGAGGGAGGGACTC..........................................................................................................................................................................

1.00

...............................................................GCCAGAGGGAGGGACTCAGGC......................................................................................................................................................................

1.00

................................................................CCAGAGGGAGGGACTCAGGC......................................................................................................................................................................

1.00

.........................................................................................................................................................................TTTTAGGGCCGCAGAG.................................................................

1.00

.....................................................AGTGAACGCGGCCAGAGGGAG................................................................................................................................................................................

1.00

......................................................................GGAGGGACTCAGGCGTC...................................................................................................................................................................

1.00

..........................................................................................................................................TCCCTCTTTTTCTTTAATT.............................................................................................

1.00

0.00

1.00

........................................................................................................CCCTCCCCGGGGGCCCGCCG..............................................................................................................................

1.00

0.00

1.00

.........................................................................................................................................................................TTTTAGGGCCGCAGAGC................................................................

1.00

......................GCCGCGCCCGGGACGACTG.................................................................................................................................................................................................................

1.00

............................................................GCGGCCAGAGGGAGGGACTCAG........................................................................................................................................................................

1.00

.......................CCGCGCCCGGGACGA....................................................................................................................................................................................................................

1.00

................AGCCAGGCCGCGCCCGGGACGAC...................................................................................................................................................................................................................

1.00

..............................CGGGACGACTGCAGAGCG..........................................................................................................................................................................................................

1.00

..................................ACGACTGCAGAGCGCGGTGAA...................................................................................................................................................................................................

1.00

0.00

1.00

..................................ACGACTGCAGAGCGCGGT......................................................................................................................................................................................................

1.00

.............................................GCGCGGTGAGTGAACGC............................................................................................................................................................................................

1.00

....................................................GAGTGAACGCGGCCAGAGG...................................................................................................................................................................................

1.00

........................................................................................................................................................................................................................................CGGGCCCACCAGCCCGAG

1.00

0.00

1.00

...............................................................GCCAGAGGGAGGGACTCAG........................................................................................................................................................................

1.00

.............................................................CGGCCAGAGGGAGGGACTCAGGCGTC...................................................................................................................................................................

1.00

...............................................................................................................................................................CGGCAGTCCGTTTTAGGGCCGCAGAT.................................................................

1.00

0.00

1.00

............................................................................................................................................................................................................................GCCCTGGGGCTTCGGAAAT...........

1.00

0.00

1.00

....................................................................AGGGAGGGACTCAGGCGT....................................................................................................................................................................

1.00

..........................................AGAGCGCGGTGAGTGAAC..............................................................................................................................................................................................

1.00

.......................................................................................................................................AGCTCCCTCTTTTTCTTTTGGCTCCG.........................................................................................

1.00

.......................................................................................................CCCCTCCCCGGGGGC....................................................................................................................................

1.00

.....................................................AGTGAACGCGGCCAGAG....................................................................................................................................................................................

1.00

............................................AGCGCGGTGAGTGAACGCGG..........................................................................................................................................................................................

1.00

..............................CGGGACGACTGCAGAGCGCGGTGA....................................................................................................................................................................................................

1.00

...............................................GCGGTGAGTGAACGCGGCCAG......................................................................................................................................................................................

1.00

.........................................................................................................................................................................................................CACCCTGCATCCCTTCCCTGCCCTGGGGAA...................

1.00

0.00

1.00

............................CCCGGGACGACTGCAGAGCGCGGT......................................................................................................................................................................................................

1.00

.......................................................TGAACGCGGCCAGAGTGGT................................................................................................................................................................................

1.00

0.00

1.00

.........................................................................................................................................................................TTTTAGGGCCGCAGA..................................................................

0.50

..........................................AGAGCGCGGTGAGTG.................................................................................................................................................................................................

0.50

...........................................................................................GTCCCCGCCCTGCCCCTC.............................................................................................................................................

0.33

.....................................................................................................................................................................................................................CTTCCCTGCCCTGGGGC....................

0.33

...........................................................................................................................................CCCTCTTTTTCTTTTGG..............................................................................................

0.33

.............................................................................................CCCCGCCCTGCCCCTCCCC..........................................................................................................................................

0.20

Size

Perfect hit

Total Norm

Perfect Norm

DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)

DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)

SRR207110(GSM721072)
Nuclear RNA. (cell line)

GSM339996(GSM339996)
hues6Neuron. (cell line)

SRR207111(GSM721073)
Whole cell RNA. (cell line)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

TAX577744(Rovira)
total RNA. (breast)

SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)

SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)

TAX577739(Rovira)
total RNA. (breast)

SRR390723(GSM850202)
total small RNA. (cell line)

SRR060168(GSM565978)
5-8F_nucleus. (cell line)

SRR033728(GSM497073)
MALT (MALT413). (B cell)

SRR029124(GSM416753)
HeLa. (hela)

TAX577580(Rovira)
total RNA. (breast)

SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)

SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)

SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)

SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)

SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)

TAX577741(Rovira)
total RNA. (breast)

SRR207116(GSM721078)
Nuclear RNA. (cell line)

SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)

TAX577745(Rovira)
total RNA. (breast)

SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)

SRR038852(GSM458535)
QF1160MB. (cell line)

RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)

SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)

SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)

SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)

SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)

SRR040030(GSM532915)
G013N. (cervix)

SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)

DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)

SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)

SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)

SRR553575(SRX182781)
source: Kidney. (Kidney)

GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR040028(GSM532913)
G026N. (cervix)

DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

SRR029129(GSM416758)
SW480. (cell line)

SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)

SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)

GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)

SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)

TAX577740(Rovira)
total RNA. (breast)

SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)

SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)

SRR015447(SRR015447)
nuclear small RNAs. (breast)

SRR029127(GSM416756)
A549. (cell line)

SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)

SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)

SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)

GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)

SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)

SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)

SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)

SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)

GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)

SRR015361(GSM380326)
Memory B cells (MM55). (B cell)

SRR037944(GSM510482)
293DcrTN_cand5. (cell line)

SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)

SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)

SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)

SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

GSM359177(GSM359177)
hela_nucl_a. (hela)

SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)

DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR189782

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)

..........................CTGCAGTCGTCCCGGGCG..............................................................................................................................................................................................................

2.00

.......................TGCAGTCGTCCCGGGCGCGG...............................................................................................................................................................................................................

1.00

.............................................................................................................................................CTCTTTTTCTTTTGGTCC...........................................................................................

1.00

0.00

1.00

.......................................................................................................CCCCTCCCCGGGGGCGGCG................................................................................................................................

1.00

0.00

1.00

............................................................................................TCCCCGCCCTGCCCCTAGAG..........................................................................................................................................

1.00

0.00

1.00

......................................................................................................................GCTGAGGGTCGGGATGTCGG................................................................................................................

1.00

..........................................................................................................................................................................................................................................GGCCCACCAGCCCCTAGTG

1.00

0.00

1.00

...............................................................................................................................................................................................................AGCCCCAGGGCAGGGAAGGGATGC...................

1.00

..........................................................................................GGTCCCCGCCCTGCCCCTAG............................................................................................................................................

1.00

0.00

1.00

..............................................................................................................................CCGACCCTCAGCTCCCACT.........................................................................................................

1.00

0.00

1.00

........................................................................................................................................GCTCCCTCTTTTTCTTTTAAG.............................................................................................

1.00

0.00

1.00

...........................................................................................GTCCCCGCCCTGCCCCTA.............................................................................................................................................

1.00

0.00

1.00

......................................................................................................................CCGACATCCCGACCCTAA..................................................................................................................

1.00

0.00

1.00

..............................................................................TCAGGCGTCCCAGGTA............................................................................................................................................................

1.00

0.00

1.00

.......................................................................................................................AGGGTCGGGATGTCG....................................................................................................................

1.00

.........CGGCCTGGCTGGCTGCG................................................................................................................................................................................................................................

0.50

..............................................................................................GGGGAGGGGCAGGGCGGG..........................................................................................................................................

0.14