ID: uc002qau.2_intron_1_0_chr19_53619178_r
GENE: (3)
chr19:53619128-53619615-


(4)
B-CELL
(2)
BRAIN
(3)
BREAST
(7)
CELL-LINE
(7)
CERVIX
(1)
FIBROBLAST
(3)
HEART
(2)
HELA
(1)
KIDNEY
(4)
LIVER
(2)
OTHER
(12)
SKIN
(1)
TESTES

Sense strand
TTTATACAGGGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTGGGTGAGGATAATTTTCTTCCAGAAGTCAAAATCTGCCCTTGGTATCTTTCCATTTTCCCTTGTGTGCCTCTTGGGAGCCCCTGCATTACCTGACTGAGTTTGAGGCCTTGTTGACTCTGAAATGAAAAGCTCCATAATGTGAACTCTGGAGTTTAACCATCCCCTTTTTCCAGATTTTCTGACCCCTTCATGATACAACAGTGGTGGTTCCAGAGCTGAAGTATCCATGAAAGCTTATGGTAGACTTCTGAAATACTCACTTCTTGTTTTCTGCCCCTGTGCTTTGATTCAGTAGTTCTTGGAAGGGAGCTAGATATTTGCATATTACAGTCTTCCCTAAGCATTCAGAGTTGGCATTCAGTGAAATAATTTGTGAAATATTTTCCTAGATCCATCTGTGATAGCCTCTCTTCTTATCCAAGCAAAGGGCTGAGATTCT
....................................................(((((......)))))....(((((.....(((...(((.......)))..(((((.............))))).....))).....)))))........................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR040035(GSM532920)
G001T. (cervix)
SRR040037(GSM532922)
G243T. (cervix)
SRR040034(GSM532919)
G001N. (cervix)
SRR189784SRR040036(GSM532921)
G243N. (cervix)
SRR029128(GSM416757)
H520. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR040029(GSM532914)
G026T. (cervix)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR040031(GSM532916)
G013T. (cervix)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040038(GSM532923)
G531N. (cervix)
SRR343335SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR029125(GSM416754)
U2OS. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR553576(SRX182782)
source: Testis. (testes)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
GSM359178(GSM359178)
hela_nucl_t. (hela)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
..................................................................................................................................................GTTTGAGGCCTTGTTCCGA...................................................................................................................................................................................................................................................................................................................................1925.000.0017.005.002.00--------------------1.00----------------------------
..................................................................................................................................................GTTTGAGGCCTTGTTCCG....................................................................................................................................................................................................................................................................................................................................1819.000.0011.005.002.00-1.00-----------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGAAATAATTTGCTA...............................................................183.000.00-----2.00---------1.00------------------------------------
..................................................................................................................................................GTTTGAGGCCTTGTTCCGC...................................................................................................................................................................................................................................................................................................................................193.000.003.00---------------------------------------------------
....................................................................................CCCTTGGTATCTTTCCATTTT...............................................................................................................................................................................................................................................................................................................................................................................................2113.003.00------2.001.00--------------------------------------------
.................................................................................................................................................................GACTCTGAAATGAAAAGGCT...................................................................................................................................................................................................................................................................................................................201.000.00---------------------1.00------------------------------
.....................................................................................................................................................................................................................................................................................................................................................TAGTTCTTGGAAGGGAGACCG..............................................................................................................................211.000.00--------------1.00-------------------------------------
......................................................................................................................................................................................................................................................ACAGTGGTGGTTCCAGAA................................................................................................................................................................................................................................181.000.00-------------------------------1.00--------------------
.............................ACAGGAACCTGGTCTCCCTGGGAACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2661.000.17--------1.00-------------------------------------------
......................................................................................................................................................................................................................................................ACAGTGGTGGTTCCATGG................................................................................................................................................................................................................................181.000.00------------1.00---------------------------------------
.......AGGGATGTGATGTTGGAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00------------------------------1.00---------------------
.........GGATGTGATGTTGGAGAATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00-----------------------------1.00----------------------
..................................................................................................................................................GTTTGAGGCCTTGTTCTGA...................................................................................................................................................................................................................................................................................................................................191.000.00----1.00-----------------------------------------------
..................................................................................................................................................GTTTGAGGCCTTGTTCCTA...................................................................................................................................................................................................................................................................................................................................191.000.00--1.00-------------------------------------------------
.............GTGATGTTGGAGAACTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-------1.00--------------------------------------------
..................................................................................................................................................GTTTGAGGCCTTGTTCCTT...................................................................................................................................................................................................................................................................................................................................191.000.001.00---------------------------------------------------
.....ACAGGGATGTGATGTTGGAGAACTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2681.000.12---------1.00------------------------------------------
...........ATGTGATGTTGGAGAACTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................211.000.00-------------------------1.00--------------------------
.............................................................................................TCTTTCCATTTTCCCTTCCT.......................................................................................................................................................................................................................................................................................................................................................................................201.000.00---------------------------1.00------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATCCATCTGTGATCGGT.................................201.000.00--------------------1.00-------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCAAAGGGCTGAGA....2011.001.00----------------------1.00-----------------------------
.....ACAGGGATGTGATGTTGGAGAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2381.000.12----------1.00-----------------------------------------
..................................................................................................................................................GTTTGAGGCCTTGTTCCGT...................................................................................................................................................................................................................................................................................................................................191.000.00-1.00--------------------------------------------------
.......AGGGATGTGATGTTGGAGAACTACAGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.500.50---------------------------------0.50------------------
.......AGGGATGTGATGTTGGAGAACTACAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.500.50--------------------------------0.50-------------------
.....ACAGGGATGTGATGTTGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2080.380.38---------------------------------------0.25--------0.12---
.TTATACAGGGATGTGATGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.330.33-------------------------------------0.33--------------
....................................................................................................................................................................................................................................................................................................................................CCTGTGCTTTGATTCA....................................................................................................................................................1630.330.33-----------------------------------0.33----------------
.....ACAGGGATGTGATGTTGGAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2180.250.25-----------------------------------------0.25----------
....TACAGGGATGTGATGTTGGAGAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2580.250.25----------------------------------------0.12------0.12----
..........GATGTGATGTTGGAGAACTACAGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2590.220.22------------------------------------------0.22---------
...................TTGGAGAACTACAGGAACCTGGTCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2660.170.17-------------------------------------------0.17--------
............................TACAGGAACCTGGTCTCCCTGGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................2460.170.17--------------------------------------------0.17-------
.............................ACAGGAACCTGGTCTCCCTGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2260.170.17--------0.17-------------------------------------------
..........................ACTACAGGAACCTGGTCTCCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.140.14---------------------------------------------0.14------
..........................ACTACAGGAACCTGGTCTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.140.14----------------------------------------------0.14-----
............................................................................................................................................................................................................................................................................AGTATCCATGAAAGC.............................................................................................................................................................................................................1570.140.14--------------------------------------0.14-------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCAAAGGGC.........1580.120.12--------------------------------------0.12-------------
..................GTTGGAGAACTACAGGAACCTGGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2580.120.12----------------------------------------0.12-----------
.....ACAGGGATGTGATGTTGGAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2280.120.12---------------------------------------------------0.12
.....ACAGGGATGTGATGTTGGAGAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2480.120.12--------------------------------0.12-------------------
......CAGGGATGTGATGTTGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1980.120.12--------------------------------------------------0.12-
....TACAGGGATGTGATGTTGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2180.120.12--------------------------------0.12-------------------

Antisense strand
TTTATACAGGGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTGGGTGAGGATAATTTTCTTCCAGAAGTCAAAATCTGCCCTTGGTATCTTTCCATTTTCCCTTGTGTGCCTCTTGGGAGCCCCTGCATTACCTGACTGAGTTTGAGGCCTTGTTGACTCTGAAATGAAAAGCTCCATAATGTGAACTCTGGAGTTTAACCATCCCCTTTTTCCAGATTTTCTGACCCCTTCATGATACAACAGTGGTGGTTCCAGAGCTGAAGTATCCATGAAAGCTTATGGTAGACTTCTGAAATACTCACTTCTTGTTTTCTGCCCCTGTGCTTTGATTCAGTAGTTCTTGGAAGGGAGCTAGATATTTGCATATTACAGTCTTCCCTAAGCATTCAGAGTTGGCATTCAGTGAAATAATTTGTGAAATATTTTCCTAGATCCATCTGTGATAGCCTCTCTTCTTATCCAAGCAAAGGGCTGAGATTCT
....................................................(((((......)))))....(((((.....(((...(((.......)))..(((((.............))))).....))).....)))))........................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR040035(GSM532920)
G001T. (cervix)
SRR040037(GSM532922)
G243T. (cervix)
SRR040034(GSM532919)
G001N. (cervix)
SRR189784SRR040036(GSM532921)
G243N. (cervix)
SRR029128(GSM416757)
H520. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR040029(GSM532914)
G026T. (cervix)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR040031(GSM532916)
G013T. (cervix)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040038(GSM532923)
G531N. (cervix)
SRR343335SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR029125(GSM416754)
U2OS. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR553576(SRX182782)
source: Testis. (testes)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
GSM359178(GSM359178)
hela_nucl_t. (hela)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
...........................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCTAAGCATTTAAT.......................................................................................... 191.000.00--------------------------1.00-------------------------
.........................................................................................................................................................................................................................................................................................................................TGTTTTCTGCCCCTGTCAG............................................................................................................................................................ 191.000.00------------------------1.00---------------------------
.........................................................................................................................................................................................................................................................................................................................TGTTTTCTGCCCCTGTCCC............................................................................................................................................................ 191.000.00---1.00------------------------------------------------
...................................................................................................................................................TTTGAGGCCTTGTTGGG.................................................................................................................................................................................................................................................................................................................................... 171.000.00----------------1.00-----------------------------------
..................................................................................................CCATTTTCCCTTGTGTGTAA.................................................................................................................................................................................................................................................................................................................................................................................. 201.000.001.00---------------------------------------------------
..............TGATGTTGGAGAACTACAGGATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 231.000.00-----------1.00----------------------------------------
...................................................................................................................................................................................................................................................................................................................ACTTCTTGTTTTCTGCAC................................................................................................................................................................... 181.000.00-----------------1.00----------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGCAAAGGGCTGAGGAT.. 201.000.00---1.00------------------------------------------------
................................................................................................................................CCTGCATTACCTGACATAG..................................................................................................................................................................................................................................................................................................................................................... 191.000.00-------------------1.00--------------------------------
.................................GAACCTGGTCTCCCTTATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00------------------1.00---------------------------------
.......................................................................................................................................................................................................................................................................................................................CTTGTTTTCTGCCCCGTT............................................................................................................................................................... 181.000.00-------------1.00--------------------------------------
..........................................................................................................................................CAGAGTCAACAAGGCCTCAAACTCAGTCAG................................................................................................................................................................................................................................................................................................................................ 3011.001.00----------------------------1.00-----------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGCCCTTTGCTTGG..... 1720.500.50----------------------------------0.50-----------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAAGAAGAGAGGC.................... 1630.330.33------------------------------------0.33---------------
.......................................................................................................................................................................................................................................................................................................................................................................................CTTAGGGAAGACTGT.................................................................................................. 1580.120.12-------------------------------------------------0.12--