ID: uc002pyk.2_intron_1_0_chr19_52543837_r.5p
GENE: (3)
chr19:52544533-52544782-


(21)
B-CELL
(8)
BRAIN
(32)
BREAST
(6)
CELL-LINE
(1)
FIBROBLAST
(2)
HELA
(1)
OTHER
(3)
SKIN

Sense strand
TTTGTACCGGGATGTGATGTTGGAGATCTACAGCAACCTGCTATCAATGGGTGAGGACAGCTGCTCTGTGTCACCTGGAGGGTGCCCAGTCTGTGGCCTTTGCTTTCTCAGTTGCTTACCCTTGGAAGTTACTGCAGTGCTCTGAATATTAGATTTTTGGCACATCCTCTGGCTTCTGATAAAAGGATATACCGTCACCCCTCAGTGTCCAAGAGGGATTGGTTTCACAACTTTCCATGGATATGAAATC
........................................................................................................................................(((((..((((.....))))..))))).((((...............))))...............................................................
.................................................................................................................................130..........................................................191.........................................................
SizePerfect hitTotal NormPerfect NormSRR343336SRR343337SRR343334SRR343335SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR390723(GSM850202)
total small RNA. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR191464(GSM715574)
112genomic small RNA (size selected RNA from . (breast)
SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191436(GSM715546)
173genomic small RNA (size selected RNA from . (breast)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR029124(GSM416753)
HeLa. (hela)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191536(GSM715646)
183genomic small RNA (size selected RNA from . (breast)
SRR191469(GSM715579)
117genomic small RNA (size selected RNA from . (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR191509(GSM715619)
156genomic small RNA (size selected RNA from . (breast)
SRR191492(GSM715602)
154genomic small RNA (size selected RNA from . (breast)
SRR191608(GSM715718)
193genomic small RNA (size selected RNA from . (breast)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)
SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)
SRR191616(GSM715726)
103genomic small RNA (size selected RNA from . (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR191483(GSM715593)
11genomic small RNA (size selected RNA from t. (breast)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)
SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)
SRR191429(GSM715539)
166genomic small RNA (size selected RNA from . (breast)
SRR191496(GSM715606)
162genomic small RNA (size selected RNA from . (breast)
SRR191461(GSM715571)
35genomic small RNA (size selected RNA from t. (breast)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
SRR191539(GSM715649)
61genomic small RNA (size selected RNA from t. (breast)
SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
SRR191473(GSM715583)
121genomic small RNA (size selected RNA from . (breast)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR191490(GSM715600)
15genomic small RNA (size selected RNA from t. (breast)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.......................................................................................................................................................................TCTGGCTTCTGATAAAGCGA...............................................................20237.000.0071.0073.0035.0031.00-----------2.00----------1.001.00-1.00---1.001.00--1.00----1.001.001.00-1.00--1.00-1.001.00---1.00--1.001.001.001.00---1.00--1.001.00-1.001.001.001.00---
...................................................................................................................................................ATTAGATTTTTGGCACTT.....................................................................................1834.000.00----4.004.001.002.003.004.004.00---2.00----1.00-1.00-1.00----1.00-------1.00-------------1.00---1.00--------1.00---1.00---1.00-------
...................................................................................................................................................ATTAGATTTTTGGCACTTC....................................................................................1932.000.00----7.007.0011.00---2.002.00----1.00-2.00------------------------------------------------------------
....................................................................................................................................................TTAGATTTTTGGCACTTC....................................................................................1814.000.00-------4.001.00---2.003.001.00--------1.00-----------------1.00---------------1.00---------------------
....................................................................................................................................................TTAGATTTTTGGCACTTCC...................................................................................1914.000.00----1.001.00--1.002.00-1.001.00---1.00---1.00-1.00-1.00-----1.00----1.00--------------------------------1.00----------
...................................................................................................................................................ATTAGATTTTTGGCACTTCC...................................................................................208.000.00----2.002.00-4.00-----------------------------------------------------------------------
....................................................................................................................................................TTAGATTTTTGGCACTTCA...................................................................................198.000.00----4.004.00-------------------------------------------------------------------------
...................................................................................................................................................ATTAGATTTTTGGCACT......................................................................................173.000.00--------1.00-------------1.00-1.00------------------------------------------------------
.......................................................................................................................................................................TCTGGCTTCTGATAAAGCGG...............................................................203.000.001.00--1.00-------------------------------------------------------------1.00-------------
.......................................................................................................................................................................TCTGGCTTCTGATAAAGC.................................................................182.000.00-1.00----------------------------------------------1.00------------------------------
.......................................................................................................................................................................TCTGGCTTCTGATAAAAC.................................................................1812.001.002.00------------------------------------------------------------------------------
......................................................................................................................................CAGTGCTCTGAATATCAAA.................................................................................................192.000.00--------------------------------------1.00--------------1.00-------------------------
...................................................................................................................................................ATTAGATTTTTGGCAATT.....................................................................................1801.001.00--------1.00----------------------------------------------------------------------
....................................................................................................................................................TTAGATTTTTGGCACTTCT...................................................................................191.000.00---------1.00---------------------------------------------------------------------
..................................................GTGAGGACAGCTGCTCTGT.....................................................................................................................................................................................1911.001.00-------------------------------------------------------1.00-----------------------
....................TGGAGATCTACAGCAGGAA...................................................................................................................................................................................................................191.000.00----------------------------------------------------------------1.00--------------
......CCGGGATGTGATGTTGGAGT................................................................................................................................................................................................................................201.000.00---------------------------------------------1.00---------------------------------
...................................................................................................................................................ATTAGATTTTTGGCACTTCA...................................................................................201.000.00------------1.00------------------------------------------------------------------
..................................................GTGAGGACAGCTGCTCTGTGTCACCTGGAGGGT.......................................................................................................................................................................3311.001.00---------------------------------------1.00---------------------------------------
...................................................................................................................................................ATTAGATTTTTGGCA........................................................................................1501.001.00---------------------1.00---------------------------------------------------------
.......................................................................................................................................................................TCTGGCTTCTGATAAAA..................................................................1711.001.00----------------------------------------------------------1.00--------------------
........................GATCTACAGCAACCTGC.................................................................................................................................................................................................................1711.001.00--------------------------------1.00----------------------------------------------
...................................................................................................................................................ATTAGATTTTTGGCACTAC....................................................................................191.000.00--------------------1.00----------------------------------------------------------
....................................................................................................................................TGCAGTGCTCTGAATGTC....................................................................................................181.000.00-------------------------------1.00-----------------------------------------------
.....................................................................GTCACCTGGAGGGTGTTT...................................................................................................................................................................181.000.00-----------------1.00-------------------------------------------------------------
.......................................................................................................................................................................TCTGGCTTCTGATAAAGCGC...............................................................201.000.00---1.00---------------------------------------------------------------------------
...................................................................................................................................................ATTAGATTTTTGGCACTA.....................................................................................181.000.00-------------------1.00-----------------------------------------------------------
...................................................................................................................................................ATTAGATTTTTGGCACTCCA...................................................................................201.000.00-----------1.00-------------------------------------------------------------------
..TGTACCGGGATGTGATGTTGGAG.................................................................................................................................................................................................................................2340.250.25-----------------------------------------------------------------------------0.25-
...GTACCGGGATGTGATGTT.....................................................................................................................................................................................................................................1840.250.25----------------------------------------------------------------------------0.25--
..........................................................................................................................................................................................................CAGTGTCCAAGAGGGA................................1650.200.20------------------------------------------------------------------------------0.20

Antisense strand
TTTGTACCGGGATGTGATGTTGGAGATCTACAGCAACCTGCTATCAATGGGTGAGGACAGCTGCTCTGTGTCACCTGGAGGGTGCCCAGTCTGTGGCCTTTGCTTTCTCAGTTGCTTACCCTTGGAAGTTACTGCAGTGCTCTGAATATTAGATTTTTGGCACATCCTCTGGCTTCTGATAAAAGGATATACCGTCACCCCTCAGTGTCCAAGAGGGATTGGTTTCACAACTTTCCATGGATATGAAATC
........................................................................................................................................(((((..((((.....))))..))))).((((...............))))...............................................................
.................................................................................................................................130..........................................................191.........................................................
SizePerfect hitTotal NormPerfect NormSRR343336SRR343337SRR343334SRR343335SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR390723(GSM850202)
total small RNA. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR191464(GSM715574)
112genomic small RNA (size selected RNA from . (breast)
SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191436(GSM715546)
173genomic small RNA (size selected RNA from . (breast)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR029124(GSM416753)
HeLa. (hela)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191536(GSM715646)
183genomic small RNA (size selected RNA from . (breast)
SRR191469(GSM715579)
117genomic small RNA (size selected RNA from . (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR191509(GSM715619)
156genomic small RNA (size selected RNA from . (breast)
SRR191492(GSM715602)
154genomic small RNA (size selected RNA from . (breast)
SRR191608(GSM715718)
193genomic small RNA (size selected RNA from . (breast)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)
SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)
SRR191616(GSM715726)
103genomic small RNA (size selected RNA from . (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR191483(GSM715593)
11genomic small RNA (size selected RNA from t. (breast)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)
SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)
SRR191429(GSM715539)
166genomic small RNA (size selected RNA from . (breast)
SRR191496(GSM715606)
162genomic small RNA (size selected RNA from . (breast)
SRR191461(GSM715571)
35genomic small RNA (size selected RNA from t. (breast)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
SRR191539(GSM715649)
61genomic small RNA (size selected RNA from t. (breast)
SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
SRR191473(GSM715583)
121genomic small RNA (size selected RNA from . (breast)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR191490(GSM715600)
15genomic small RNA (size selected RNA from t. (breast)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.......................................................................................................................................................................TCTGGCTTCTGATAAACA................................................................. 1831.000.006.005.009.0010.00------------------------------------1.00--------------------------------------
.......................................................................................................................................................................TCTGGCTTCTGATAAACAA................................................................ 194.000.00--3.001.00---------------------------------------------------------------------------
.......................................................................................................................................................................TCTGGCTTCTGATAAAC.................................................................. 172.000.00--1.001.00---------------------------------------------------------------------------
....................................................................................................................................................................TCCTCTGGCTTCTGACGT.................................................................... 181.000.00-----------------------------------------------1.00-------------------------------
.....................................................................................................................................................................CCTCTGGCTTCTGATAATAC................................................................. 201.000.00-----------------1.00-------------------------------------------------------------
...............................................................................................................................................................................................................................TTCACAACTTTCCATCGC......... 181.000.00-------------------------1.00-----------------------------------------------------