ID: uc002pkp.4
GENE: BCAT2(6)
chr19:49300230-49300497-


(3)
AGO2.ip 		(2)
AGO3.ip 		(3)
B-CELL 		(2)
BRAIN 		(9)
BREAST 		(13)
CELL-LINE 		(4)
CERVIX 		(1)
FIBROBLAST 		(5)
HEART 		(2)
HELA 		(1)
KIDNEY 		(4)
LIVER 		(1)
OTHER 		(20)
SKIN

Sense strand
CGAGGTGGGAACCATGAACATCTTTGTCTACTGGACCCACGAAGATGGGGGTAAGCCCACCCATGACCCAGCCCGAACCCTGGTGGAAGTGGGTGGCACCATCATTCCTGGCAGGTTACAGGCCCCAGGGATTCTGGGATGGGGGAAGGGGGTGGCTCTTAAGACGGCGGTGCTAGGGGGTGAGAGGTAACATCTTCCACCCCTTACACCTGCCCTAGTGCTGGAGCTGGTGACGCCCCCGCTGAATGGTGTTATCCTGCCTGGAGTG
.....................................................................................................................................................................(((((((.(((((((((.((((......))))))))))))))))).)))......................................................
...............................................................................................................................................................160.......................................................218................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR037935(GSM510473)
293cand3. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787GSM532880(GSM532880)
G659T. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR191459(GSM715569)
32genomic small RNA (size selected RNA from t. (breast)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR191580(GSM715690)
103genomic small RNA (size selected RNA from . (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577741(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040014(GSM532899)
G623N. (cervix)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR343335SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCTAG..................................................23121.0021.003.002.00-1.001.00-1.00--1.001.00----1.001.002.00--1.00-1.00--1.00---1.00-------------1.001.00---------1.00---------------
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCTA...................................................22115.0015.00--1.00-1.00-----1.00---2.00------1.00----1.00-1.00-1.00-----1.00--------1.00-----1.001.00----------1.00-1.00----
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCTAA..................................................2317.0015.00-----3.00---------1.00---1.00------------1.00--------------------1.00----------------
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCTAT..................................................2315.0015.002.00-----------1.00---------------------------------------------1.00---------1.00-
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCTAGT.................................................2415.005.001.00-1.00--------------------------------1.00--1.00---------1.00---------------------
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCTT...................................................2215.001.00------1.00---------1.00----------1.00---1.00-----------------------------------1.00--
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCTAGA.................................................2413.0021.00-----------------------------------------1.00----------------------1.00-1.00---
.......................................................................................................................................................................CGGTGCTAGGGGGTGA.....................................................................................1613.003.00-3.00--------------------------------------------------------------------
......................TTTGTCTACTGGACCCACGAAGATGG............................................................................................................................................................................................................................2612.002.00--------2.00-------------------------------------------------------------
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCCA...................................................2212.002.00------------------2.00---------------------------------------------------
.....................................................................................................................................................................................................CACCCCTTACACCTGCCCTATA.................................................222.000.00---2.00------------------------------------------------------------------
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCC.....................................................2012.002.00----------------------------------1.00-------1.00---------------------------
...................ATCTTTGTCTACTGGACCCACGAAGATGGGG..........................................................................................................................................................................................................................3111.001.00-----------------------1.00----------------------------------------------
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCT....................................................2111.001.00-------------------------------------------------------------1.00--------
.....................CTTTGTCTACTGGACCCACGAAGATG.............................................................................................................................................................................................................................2611.001.00-------------------1.00--------------------------------------------------
.GAGGTGGGAACCATGAA..........................................................................................................................................................................................................................................................1711.001.00--------------------------------------------------1.00-------------------
.....................................................................................................................................................................................................CACCCCTTACACCTGCCCCA...................................................201.000.00-------------------------------------1.00--------------------------------
............................................................................................................................................................................................................................CTGGAGCTGGTGACGCCCCCGC..........................2211.001.00-------------------------------------------------1.00--------------------
...........................CTACTGGACCCACGAAGATGG............................................................................................................................................................................................................................2111.001.00------------------------1.00---------------------------------------------
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCATT..................................................2311.002.00--1.00-------------------------------------------------------------------
.............................................................................................................................................................................TAGGGGGTGAGAGGTACC.............................................................................181.000.00-------------------------------------------------------1.00--------------
....................................................................................................................................................................CGGCGGTGCTAGGGGGTGAGAGTT................................................................................241.000.00-----------------------------------------------------------1.00----------
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCGA...................................................2211.002.001.00---------------------------------------------------------------------
..........................................................................................................................................ATGGGGGAAGGGGGTGTTTC..............................................................................................................201.000.00-------------1.00--------------------------------------------------------
................................................................................................................................................................................................TCTTCCACCCCTTACACCTGC.......................................................2111.001.00--1.00-------------------------------------------------------------------
....................................................................................................................................................................................................CCACCCCTTACACCTGCCCCTT..................................................221.000.001.00---------------------------------------------------------------------
.............................ACTGGACCCACGAAGAT..............................................................................................................................................................................................................................1711.001.00-----------1.00----------------------------------------------------------
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCTACA.................................................2411.0015.00--------------------------------------------------------1.00-------------
.......................TTGTCTACTGGACCCACGAAGATGG............................................................................................................................................................................................................................2511.001.00--------------------------------------------------------------1.00-------
....................................................................................................................................................................................................CCACCCCTTACACCTGCCCTAG..................................................2211.001.001.00---------------------------------------------------------------------
....GTGGGAACCATGAACTCTG.....................................................................................................................................................................................................................................................191.000.00---------------------------------1.00------------------------------------
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCATA..................................................2311.002.00----------------------------------------------1.00-----------------------
...........................................................................................................................................................................................TAACATCTTCCACCCCTTACACCTGCCCCAG..................................................311.000.001.00---------------------------------------------------------------------
............................................................................................................................................................................................................................CTGGAGCTGGTGACGCCCCCGCTGAATGGTGC................321.000.00-------------1.00--------------------------------------------------------
........................................................................................................................................GGATGGGGGAAGGGGACC..................................................................................................................181.000.00----------------------------------------1.00-----------------------------
...........................................................................AACCCTGGTGGAAGTGGG...............................................................................................................................................................................1811.001.00-----------------------------------------------1.00----------------------
..............TGAACATCTTTGTCTACTGG..........................................................................................................................................................................................................................................2011.001.00---------------------------------------------------------1.00------------
............................................................................................................................................GGGGGAAGGGGGTGGAAAA.............................................................................................................191.000.001.00---------------------------------------------------------------------
..................................................................................................................................................................GACGGCGGTGCTAGGGGGTGA.....................................................................................2111.001.00---------1.00------------------------------------------------------------
...................ATCTTTGTCTACTGGACCCACGAAG................................................................................................................................................................................................................................2511.001.00-----------1.00----------------------------------------------------------
.......................TTGTCTACTGGACCCACGAAGATGGGG..........................................................................................................................................................................................................................2711.001.00---------------------------------------------------------------------1.00
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCTTA..................................................2311.001.00------1.00---------------------------------------------------------------
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCCAG..................................................2311.002.00---------------------------------------1.00------------------------------
...................................................................................................................................................................................................TCCACCCCTTACACCTGCCCTTT..................................................2311.001.00------------1.00---------------------------------------------------------
....................TCTTTGTCTACTGGACCCATT...................................................................................................................................................................................................................................211.000.00----1.00-----------------------------------------------------------------
....................................CCACGAAGATGGGGGT........................................................................................................................................................................................................................1620.500.50--------------------0.50-------------------------------------------------
.................................................................................................................................................................................................................................................CTGAATGGTGTTATC............1570.140.14--0.14-------------------------------------------------------------------

Antisense strand
CGAGGTGGGAACCATGAACATCTTTGTCTACTGGACCCACGAAGATGGGGGTAAGCCCACCCATGACCCAGCCCGAACCCTGGTGGAAGTGGGTGGCACCATCATTCCTGGCAGGTTACAGGCCCCAGGGATTCTGGGATGGGGGAAGGGGGTGGCTCTTAAGACGGCGGTGCTAGGGGGTGAGAGGTAACATCTTCCACCCCTTACACCTGCCCTAGTGCTGGAGCTGGTGACGCCCCCGCTGAATGGTGTTATCCTGCCTGGAGTG
.....................................................................................................................................................................(((((((.(((((((((.((((......))))))))))))))))).)))......................................................
...............................................................................................................................................................160.......................................................218................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR037935(GSM510473)
293cand3. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787GSM532880(GSM532880)
G659T. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR191459(GSM715569)
32genomic small RNA (size selected RNA from t. (breast)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR191580(GSM715690)
103genomic small RNA (size selected RNA from . (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577741(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040014(GSM532899)
G623N. (cervix)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR343335SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
........................................................................................................TTCCTGGCAGGTTACACGGC................................................................................................................................................ 203.000.00-------2.00----------------------------------------------------1.00---------
.........................................................................................................................................................................................GTGGAAGATGTTACC.................................................................... 1570.140.14--0.14-------------------------------------------------------------------