ID: uc002pjr.2_intron_0_0_chr19_49122801_f.5p
GENE: (1)
chr19:49122751-49123000+


(8)
B-CELL
(2)
BREAST
(23)
CELL-LINE
(2)
CERVIX
(1)
HEART
(4)
HELA
(1)
KIDNEY
(2)
LIVER
(2)
OTHER
(1)
RRP40.ip
(15)
SKIN
(1)
TESTES

Sense strand
CGACGGCCTCTCAGTGGCTCCCGGAGGACCCGGCGGGCCCAGTGTTGGAGGTGAGGAGGCGGGGCTGGCAGGGCTAGTCGGGGCATCTGGAAATTTCCGACCCCACGCTTCGGGCGTTTCCTTATCAGGTTCACCGCTCCCTGATCTCGCGCTGCACTTCGTAGGCGCAGCCGCTGCTTGGGAAGTCCTACTTAAGGTCTAACCCGAGATGATCTTGCTGCACCTCAATCTATAGCATCCTGTATTCCCA
............................................................((((...((((.((.((((((((.....((((((.(((((.........))))).))))))......((....))...)))))).)).)).)))).))))..........................................................................................
............................................................61...........................................................................................................170..............................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR029127(GSM416756)
A549. (cell line)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR029132(GSM416761)
MB-MDA231. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR553576(SRX182782)
source: Testis. (testes)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189783SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR029124(GSM416753)
HeLa. (hela)
GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040036(GSM532921)
G243N. (cervix)
SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR038860(GSM458543)
MM426. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR038862(GSM458545)
MM472. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM359196(GSM359196)
m3m7G_ip. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR343336SRR343335SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR343337
.................................................................TGGCAGGGCTAGTCGTA........................................................................................................................................................................174.000.00-----------------------2.001.00-------------------------------1.00----------
.................................................................................................................................................CTCGCGCTGCACTTCGTAGGC....................................................................................2113.003.002.00------------------------------------------------------1.00-----------
................................GCGGGCCCAGTGTTGGAG........................................................................................................................................................................................................1813.003.00-------3.00-----------------------------------------------------------
............................................................................GTCGGGGCATCTGGAAATTTC.........................................................................................................................................................2113.003.003.00------------------------------------------------------------------
......................................CCAGTGTTGGAGGTGAGGAG................................................................................................................................................................................................2013.003.00-2.00--------------------------------------------1.00--------------------
.....................CGGAGGACCCGGCGGGCC...................................................................................................................................................................................................................1812.002.00------------1.00--------------------------------1.00---------------------
..............................................................................................................................AGGTTCACCGCTCCCTGATCTCGCGCTGCACTTCGT........................................................................................3612.002.00------------------------------1.00--------------------------1.00---------
...........................................................................AGTCGGGGCATCTGGAAATT...........................................................................................................................................................2012.002.00----2.00--------------------------------------------------------------
.............................................................................................................................................................TTCGTAGGCGCAGCCGC............................................................................1712.002.00--1.00----------------1.00-----------------------------------------------
........................................AGTGTTGGAGGTGAGGAGG...............................................................................................................................................................................................1912.002.00----------------------2.00--------------------------------------------
..............................................................................................................CGGGCGTTTCCTTATCAGGTT.......................................................................................................................2112.002.00-1.00----------------------------------------1.00------------------------
..........................................................................TAGTCGGGGCATCTGGAAATTTCC........................................................................................................................................................2412.002.00---2.00---------------------------------------------------------------
.........................................................................................................................................................................GCCGCTGCTTGGGAAGTCCTACTTAAGGTCT..................................................3112.002.00-----------------2.00-------------------------------------------------
.........................................................................CTAGTCGGGGCATCTGG................................................................................................................................................................1711.001.00-------------------1.00-----------------------------------------------
....................CCGGAGGACCCGGCGGCG....................................................................................................................................................................................................................181.000.00----------------1.00--------------------------------------------------
...........................................................CGGGGCTGGCAGGGCTAGTC...........................................................................................................................................................................2011.001.00----------1.00--------------------------------------------------------
................................................AGGTGAGGAGGCGGGGCTT.......................................................................................................................................................................................191.000.00---------------------1.00---------------------------------------------
..........................................................................TAGTCGGGGCATCTGGAAATTTCCGACCCCACGCTTCGGGCGTTTCC.................................................................................................................................4711.001.00---------------------------------------1.00---------------------------
............................CCCGGCGGGCCCAGTCG.............................................................................................................................................................................................................171.000.00-----------1.00-------------------------------------------------------
.....................CGGAGGACCCGGCGGGCCC..................................................................................................................................................................................................................1911.001.00------------------------------------------------------1.00------------
......................................CCAGTGTTGGAGGTGAGGAGGT..............................................................................................................................................................................................2211.001.00-1.00-----------------------------------------------------------------
.....................................................................................TCTGGAAATTTCCGACCC...................................................................................................................................................1811.001.00---------1.00---------------------------------------------------------
...............................................................................................................................................................................................................GATGATCTTGCTGCACCTC........................1911.001.00--------------1.00----------------------------------------------------
.......................................................................................................................................GCTCCCTGATCTCGCGCTG................................................................................................1911.001.00----------------------------------------------------1.00--------------
..............................................................................CGGGGCATCTGGAAATTTC.........................................................................................................................................................1911.001.00------1.00------------------------------------------------------------
.........................................................................................................................................TCCCTGATCTCGCGC..................................................................................................1511.001.00--1.00----------------------------------------------------------------
........................................................................................................................................CTCCCTGATCTCGCGCC.................................................................................................171.000.00---------------------------------1.00---------------------------------
.........................................................................................................................................................................GCCGCTGCTTGGGAAGTC...............................................................1811.001.00----------1.00--------------------------------------------------------
.........................................................................CTAGTCGGGGCATCTGGA...............................................................................................................................................................1811.001.00-1.00-----------------------------------------------------------------
..............................................................................CGGGGCATCTGGAAATTT..........................................................................................................................................................1811.001.00-1.00-----------------------------------------------------------------
............................................TTGGAGGTGAGGAGGCGGGGCTGGCAGGGCTA..............................................................................................................................................................................3211.001.00----------------------------------1.00--------------------------------
..........................................................................................................................................CCCTGATCTCGCGCTGC...............................................................................................1711.001.00--1.00----------------------------------------------------------------
...............................................GAGGTGAGGAGGCGGGGCTGG......................................................................................................................................................................................2111.001.00--------------------------------1.00----------------------------------
.................................................................................................................................................................................TTGGGAAGTCCTACTTAAGG.....................................................2011.001.001.00------------------------------------------------------------------
...............................................................................................................................................ATCTCGCGCTGCACTTCGTAGGC....................................................................................2311.001.00-----------------------------------1.00-------------------------------
.....................................................................................TCTGGAAATTTCCGACCCCACGCTTCGGG........................................................................................................................................2911.001.00------1.00------------------------------------------------------------
..............................................................................................................................................GATCTCGCGCTGCACTTCGTA.......................................................................................2111.001.00---------------1.00---------------------------------------------------
...............................................GAGGTGAGGAGGCGGGGCA........................................................................................................................................................................................191.000.00---------------1.00---------------------------------------------------
....................................................GAGGAGGCGGGGCTGGCTCTT.................................................................................................................................................................................211.000.00---------------------------1.00---------------------------------------
.......................................................................................................................................GCTCCCTGATCTCGCGCTGC...............................................................................................2011.001.00-----------------------------------------------------1.00-------------
..........................................................................................................GCTTCGGGCGTTTCCTTATC............................................................................................................................2011.001.00-------------------------------------1.00-----------------------------
..............................................................................CGGGGCATCTGGAAATTTA.........................................................................................................................................................1911.001.00------------1.00------------------------------------------------------
...........................................GTTGGAGGTGAGGAGGCG.............................................................................................................................................................................................1811.001.00------1.00------------------------------------------------------------
...................CCCGGAGGACCCGGCGGT.....................................................................................................................................................................................................................181.000.00---------------------------------------------------1.00---------------
............................................................GGGGCTGGCAGGGCTAGTCGGGGCAT....................................................................................................................................................................2611.001.00--------------1.00----------------------------------------------------
.............................................................................................................TCGGGCGTTTCCTTATCAGG.........................................................................................................................2011.001.00-------------------------------------------------1.00-----------------
.........................................GTGTTGGAGGTGAGGAGGCGGG...........................................................................................................................................................................................2211.001.00------------------1.00------------------------------------------------
......................................CCAGTGTTGGAGGTGAGGAGG...............................................................................................................................................................................................2111.001.00------------------------------------1.00------------------------------
........................................................................................................................................................................................................................................TAGCATCCTGTATTCTGC181.000.00-------------------------------------------1.00-----------------------
.....................................................AGGAGGCGGGGCTGGCAGGG.................................................................................................................................................................................2021.001.00----1.00--------------------------------------------------------------
.................................................................................................................................................................................TTGGGAAGTCCTACTTAAGAG....................................................211.000.00----------------1.00--------------------------------------------------
..............TGGCTCCCGGAGGACCCGGCG.......................................................................................................................................................................................................................2111.001.00-----------------------------------------------1.00-------------------
...........................................................................................................................................CCTGATCTCGCGCTGCACT............................................................................................1911.001.00-----------------------------1.00-------------------------------------
....................................................................................................................................................................................................GTCTAACCCGAGATGATC....................................1811.001.001.00------------------------------------------------------------------
.............................................TGGAGGTGAGGAGGCGGGGCTGGCAGGGC................................................................................................................................................................................2911.001.00------------------------------------------------1.00------------------
................................................AGGTGAGGAGGCGGGGCTG.......................................................................................................................................................................................1911.001.00---------------------1.00---------------------------------------------
.............................................................GGGCTGGCAGGGCTAGTC...........................................................................................................................................................................1811.001.00------------------1.00------------------------------------------------
.........................................................................................................................................TCCCTGATCTCGCGCTGCACTTCGTAGG.....................................................................................2811.001.00-------------------------1.00-----------------------------------------
..........................................................................TAGTCGGGGCATCTGGAAATTTC.........................................................................................................................................................2311.001.00-----------------------------------------1.00-------------------------
...........................................................CGGGGCTGGCAGGGCTAG.............................................................................................................................................................................1830.330.33------------------------------------------------------------0.33------
..........................................................................................................................................................................................................................TGCACCTCAATCTAT.................1550.200.20------------------------0.20------------------------------------------
..........................................................GCGGGGCTGGCAGGGC................................................................................................................................................................................1680.120.12-----------------------------------------------------------------0.12-

Antisense strand
CGACGGCCTCTCAGTGGCTCCCGGAGGACCCGGCGGGCCCAGTGTTGGAGGTGAGGAGGCGGGGCTGGCAGGGCTAGTCGGGGCATCTGGAAATTTCCGACCCCACGCTTCGGGCGTTTCCTTATCAGGTTCACCGCTCCCTGATCTCGCGCTGCACTTCGTAGGCGCAGCCGCTGCTTGGGAAGTCCTACTTAAGGTCTAACCCGAGATGATCTTGCTGCACCTCAATCTATAGCATCCTGTATTCCCA
............................................................((((...((((.((.((((((((.....((((((.(((((.........))))).))))))......((....))...)))))).)).)).)))).))))..........................................................................................
............................................................61...........................................................................................................170..............................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR029127(GSM416756)
A549. (cell line)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR029132(GSM416761)
MB-MDA231. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR553576(SRX182782)
source: Testis. (testes)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189783SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR029124(GSM416753)
HeLa. (hela)
GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040036(GSM532921)
G243N. (cervix)
SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR038860(GSM458543)
MM426. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR038862(GSM458545)
MM472. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM359196(GSM359196)
m3m7G_ip. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR343336SRR343335SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR343337
..............................................................................................TTCCGACCCCACGCTTGTTC........................................................................................................................................ 206.000.00-----3.00--3.00----------------------------------------------------------
...................CCCGGAGGACCCGGCGGGG.................................................................................................................................................................................................................... 192.000.00--------------------------1.00-----------------1.00----------------------
..............................................................................................................................................................................................................................GGATGCTATAGATTGAGG.......... 1812.002.00---------2.00---------------------------------------------------------
...................CCCGGAGGACCCGGCGGG..................................................................................................................................................................................................................... 181.000.00---1.00---------------------------------------------------------------
.........................................................................................................................................................GCAGCGGCTGCGCCTACGAAGTGC......................................................................... 2411.001.00----------------------------1.00--------------------------------------
...................CCCGGAGGACCCGGCGGGGA................................................................................................................................................................................................................... 201.000.00-------------1.00-----------------------------------------------------
...................CCCGCCGGGTCCTCCGGG..................................................................................................................................................................................................................... 1811.001.00-------------1.00-----------------------------------------------------
...................CCCGGAGGACCCGGCGGGGC................................................................................................................................................................................................................... 201.000.00--------------------------------------1.00----------------------------
...................CCCGGAGGACCCGGCGGGGA................................................................................................................................................................................................................... 201.000.00-----------1.00-------------------------------------------------------
...............................................................................................................................................................................TAGACCTTAAGTAGGACTTCCCAAGC................................................. 2611.001.00--------------------1.00----------------------------------------------
..................................................................................................................................................................AGGCGCAGCCGCTGCGGAA..................................................................... 191.000.00-------------------------------1.00-----------------------------------
..................TCCCGGAGGACCCGGCGCGGC................................................................................................................................................................................................................... 211.000.00----------------------------------------1.00--------------------------
...............................................................................................TCCGACCCCACGCTTGGT......................................................................................................................................... 181.000.00--------------------------------------------------1.00----------------
............................................................................................................................................................................TAGACCTTAAGTAGGACTTCCCAAGCAGC................................................. 2911.001.00--------------------1.00----------------------------------------------
......................CCCGCCGGGTCCTCC..................................................................................................................................................................................................................... 1580.620.62-------------------------0.12------------------------------------0.120.120.12-0.12
............................ACTGGGCCCGCCGGG............................................................................................................................................................................................................... 1520.500.50----------------------------------------------------------0.50--------
..........................................................................................................................GCGGTGAACCTGATA................................................................................................................. 1530.330.33-----------------------------------------------------------0.33-------
........................................................................................................................................................................TTCCCAAGCAGCGGCT.................................................................. 1640.250.25-------------------------------------------------------------0.25-----