| (9) B-CELL | (1) BRAIN | (4) BREAST | (23) CELL-LINE | (2) CERVIX | (2) HELA | (3) OTHER | (2) RRP40.ip | (2) SKIN | (2) UTERUS | (1) XRN.ip |
| CTCGTTAAACAAGACCTACGAAGGATACTGGAAGTTTTGCAGTGCAGAAGGTGAGTGTCCTGTCTCTAAATACCTCAGAGCAGTAATCTTGGTCTCTGAGGCTGGGATCTGAGGCAAAACACAAGAGGGTTCTGAAAATAGAATCCATAGCCAATTAAGTTGTGAAAATAAAGGATGTTCGATTTCTGACGATATAAAAATCACATTGCACCATAGATATGTTATGAGCATTTCAACCACATTATTTTGA .......................................................................................................................(((((..((((((((....)))))))).(((....)))..)))))...................................................................................... ......................................................................................................................119...................................................173........................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell) | SRR033722(GSM497067) KMS12 cell line (KMS12). (B cell) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR033713(GSM497058) Burkitt Lymphoma (BL115). (B cell) | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR094131(GSM651907) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR029132(GSM416761) MB-MDA231. (cell line) | SRR033732(GSM497077) bjab cell line (bjab103). (B cell) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207110(GSM721072) Nuclear RNA. (cell line) | SRR330879(SRX091717) tissue: skin psoriatic involveddisease state:. (skin) | SRR107297(GSM677704) 18-30nt fraction of small RNA. (cell line) | GSM450601(GSM450601) miRNA sequencing raw reads from post-mortem s. (brain) | SRR033724(GSM497069) L428 cell line (L428). (B cell) | SRR060984(GSM569188) Human plasma cell [09-001]. (cell line) | SRR343333(GSM796036) KSHV (HHV8). (cell line) | SRR037937(GSM510475) 293cand2. (cell line) | SRR330861(SRX091699) tissue: skin psoriatic involveddisease state:. (skin) | SRR033730(GSM497075) Lymphoblastic (ALL411). (B cell) | SRR038856(GSM458539) D11. (cell line) | SRR037933(GSM510471) 293cand4_rep2. (cell line) | SRR207111(GSM721073) Whole cell RNA. (cell line) | SRR033712(GSM497057) Burkitt Lymphoma (BL510). (B cell) | SRR033718(GSM497063) Multiple Myeloma (U266). (B cell) | SRR094129(GSM651905) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR037935(GSM510473) 293cand3. (cell line) | SRR191586(GSM715696) 197genomic small RNA (size selected RNA from . (breast) | SRR191607(GSM715717) 192genomic small RNA (size selected RNA from . (breast) | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) | SRR207118(GSM721080) RRP40 knockdown. (RRP40 cell line) | SRR189782 | SRR033716(GSM497061) Mentle Cell Lymphoma (MCL114). (B cell) | TAX577739(Rovira) total RNA. (breast) | SRR040025(GSM532910) G613T. (cervix) | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | SRR029126(GSM416755) 143B. (cell line) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR038860(GSM458543) MM426. (cell line) | SRR037934(GSM510472) 293cand4_rep3. (cell line) | SRR038862(GSM458545) MM472. (cell line) | SRR191632(GSM715742) 78genomic small RNA (size selected RNA from t. (breast) | SRR040035(GSM532920) G001T. (cervix) | SRR029125(GSM416754) U2OS. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR343334 | SRR343335 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...........................................................................................................................AGAGGGTTCTGAAAAAAA............................................................................................................. | 18 | 50.00 | 0.00 | 8.00 | 2.00 | 6.00 | 4.00 | - | 3.00 | 1.00 | 3.00 | - | 2.00 | 2.00 | - | 1.00 | 1.00 | - | - | - | 2.00 | - | - | 1.00 | 1.00 | - | 1.00 | 1.00 | 1.00 | - | 1.00 | 1.00 | 1.00 | - | 1.00 | - | 1.00 | 1.00 | - | - | - | 1.00 | 1.00 | - | 1.00 | - | 1.00 | - | - | - | - | |
| ...........................................................................................................................AGAGGGTTCTGAAAAAAAA............................................................................................................ | 19 | 38.00 | 0.00 | - | 5.00 | 1.00 | 3.00 | 5.00 | 1.00 | 3.00 | - | - | - | - | 2.00 | - | 1.00 | 2.00 | 2.00 | 2.00 | - | 2.00 | 2.00 | 1.00 | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | 1.00 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | |
| ......................................................................................................................................................CCAATTAAGTTGTGATATT................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................ACCTCAGAGCAGTAAGAC................................................................................................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................ATACTGGAAGTTTTGCA................................................................................................................................................................................................................. | 17 | 3 | 0.67 | 0.67 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.67 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| CTCGTTAAACAAGACCTACGAAGGATACTGGAAGTTTTGCAGTGCAGAAGGTGAGTGTCCTGTCTCTAAATACCTCAGAGCAGTAATCTTGGTCTCTGAGGCTGGGATCTGAGGCAAAACACAAGAGGGTTCTGAAAATAGAATCCATAGCCAATTAAGTTGTGAAAATAAAGGATGTTCGATTTCTGACGATATAAAAATCACATTGCACCATAGATATGTTATGAGCATTTCAACCACATTATTTTGA .......................................................................................................................(((((..((((((((....)))))))).(((....)))..)))))...................................................................................... ......................................................................................................................119...................................................173........................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell) | SRR033722(GSM497067) KMS12 cell line (KMS12). (B cell) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR033713(GSM497058) Burkitt Lymphoma (BL115). (B cell) | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR094131(GSM651907) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR029132(GSM416761) MB-MDA231. (cell line) | SRR033732(GSM497077) bjab cell line (bjab103). (B cell) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207110(GSM721072) Nuclear RNA. (cell line) | SRR330879(SRX091717) tissue: skin psoriatic involveddisease state:. (skin) | SRR107297(GSM677704) 18-30nt fraction of small RNA. (cell line) | GSM450601(GSM450601) miRNA sequencing raw reads from post-mortem s. (brain) | SRR033724(GSM497069) L428 cell line (L428). (B cell) | SRR060984(GSM569188) Human plasma cell [09-001]. (cell line) | SRR343333(GSM796036) KSHV (HHV8). (cell line) | SRR037937(GSM510475) 293cand2. (cell line) | SRR330861(SRX091699) tissue: skin psoriatic involveddisease state:. (skin) | SRR033730(GSM497075) Lymphoblastic (ALL411). (B cell) | SRR038856(GSM458539) D11. (cell line) | SRR037933(GSM510471) 293cand4_rep2. (cell line) | SRR207111(GSM721073) Whole cell RNA. (cell line) | SRR033712(GSM497057) Burkitt Lymphoma (BL510). (B cell) | SRR033718(GSM497063) Multiple Myeloma (U266). (B cell) | SRR094129(GSM651905) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR037935(GSM510473) 293cand3. (cell line) | SRR191586(GSM715696) 197genomic small RNA (size selected RNA from . (breast) | SRR191607(GSM715717) 192genomic small RNA (size selected RNA from . (breast) | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) | SRR207118(GSM721080) RRP40 knockdown. (RRP40 cell line) | SRR189782 | SRR033716(GSM497061) Mentle Cell Lymphoma (MCL114). (B cell) | TAX577739(Rovira) total RNA. (breast) | SRR040025(GSM532910) G613T. (cervix) | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | SRR029126(GSM416755) 143B. (cell line) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR038860(GSM458543) MM426. (cell line) | SRR037934(GSM510472) 293cand4_rep3. (cell line) | SRR038862(GSM458545) MM472. (cell line) | SRR191632(GSM715742) 78genomic small RNA (size selected RNA from t. (breast) | SRR040035(GSM532920) G001T. (cervix) | SRR029125(GSM416754) U2OS. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR343334 | SRR343335 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .................................................................................................................................................................GTGAAAATAAAGGATGTT....................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........CAAGACCTACGAAGGGTT............................................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................AAAGGATGTTCGATTG................................................................. | 16 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................ATGTTATGAGCATTTTTA.............. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ..................................................................................................................................................................TGAAAATAAAGGATGTTTTG.................................................................... | 20 | 0.57 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.29 | 0.29 | - | - | |
| ........................................................................................................................................TGGCTATGGATTCTATT................................................................................................. | 17 | 4 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 | 0.25 |
| ..................................................................................................................................................................ACATCCTTTATTTTCA........................................................................ | 16 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |