ID: uc002phg.3_intron_9_0_chr19_48043136_r
GENE: (3)
chr19:48043086-48043482-


(2)
B-CELL 		(2)
BRAIN 		(3)
BREAST 		(6)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(3)
LIVER 		(4)
OTHER 		(1)
RRP40.ip 		(6)
SKIN 		(1)
TESTES

Sense strand
GTTTTCACAGCGACCAGTGGCCGTCACCTCGAGGGAAGCAGGAACCGCAGGTGAAGGGGGACGACCAGTGGCTTGGTGGTTACTGGGTTTCTGGCAGGCCTGTGGGGAGTAAACGAGATTGGTGTCACTTATCTCAGGATGGGGACGTCACTCTGGGTCGGGGGCTGGAGTCAGGCTGTGTGGCTCTCCAGGGGCAGGCCATTGCCATGGGCTGCAGCAGCTCTCCAGCTTGGTCCATGCCACAGACTCACTGCTGTTTTCTATGACAGCTTTTTTTGCTGAAGCAGCTCTTCCTTTCCCCACCTACCTTATCTCTTAAAGAGCCATCTCTTCTCTTCTGTGTTTAGGTGTTTGGCACAGAGTTTTGCAAGCCGCTAAGACAGGTGCTGAGGCCAGA
.................................................................................................................................................................................................................((((((..((((.....((((((((....)))).)).))....((((((......)))))).......))))..))))))............................................................................................................
.................................................................................................................................................................................................................210.....................................................................................298.................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR343336SRR040036(GSM532921)
G243N. (cervix)		SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		TAX577738(Rovira)
total RNA. (breast)		GSM532886(GSM532886)
G850T. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR343334SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335
....................................................................................................................................................................................................................................................................................TGCTGAAGCAGCTCTGGA.......................................................................................................18438.000.00262.00176.00----------------------------
....................................................................................................................................................................................................................................................................................TGCTGAAGCAGCTCTGGAT......................................................................................................1955.000.0040.0015.00----------------------------
....................................................................................................................................................................................................................................................................................TGCTGAAGCAGCTCTGGAC......................................................................................................1953.000.0036.0017.00----------------------------
....................................................................................................................................................................................................................................................................................TGCTGAAGCAGCTCTGGAA......................................................................................................1919.000.0016.003.00----------------------------
....................................................................................................................................................................................................................................................................................TGCTGAAGCAGCTCTGT........................................................................................................177.000.007.00-----------------------------
....................................................................................................................................................................................................................................................................................TGCTGAAGCAGCTCTGGAG......................................................................................................197.000.007.00-----------------------------
....................................................................................................................................................................................................................................................................................TGCTGAAGCAGCTCTGGC.......................................................................................................183.000.001.002.00----------------------------
....................................................................................................................................................................................................................................................................................TGCTGAAGCAGCTCTGAC.......................................................................................................183.000.002.001.00----------------------------
....................................................................................................................................................................................................................................................................................TGCTGAAGCAGCTCTGACC......................................................................................................192.000.00-2.00----------------------------
....................................................................................................................................................................................................................................................................................TGCTGAAGCAGCTCTGGTT......................................................................................................192.000.001.001.00----------------------------
....................................................................................................................................................................................................................................................................................TGCTGAAGCAGCTCTGAAG......................................................................................................192.000.002.00-----------------------------
....................................................................................................................................................................................................................................................................................TGCTGAAGCAGCTCTGGGA......................................................................................................192.000.002.00-----------------------------
....TCACAGCGACCAGTGCC........................................................................................................................................................................................................................................................................................................................................................................................171.000.00-----------------------1.00------
...TTCACAGCGACCAGTCTCT.......................................................................................................................................................................................................................................................................................................................................................................................191.000.00----------1.00-------------------
......................................................................................................................................................................................................................CAGCAGCTCTCCAGCGTG.....................................................................................................................................................................181.000.00---------------1.00--------------
.............................................................................................................................................................................................................................................................................................................................................................................TGCAAGCCGCTAAGACAGGTGCTGAG......2611.001.00--1.00---------------------------
....................................................................................................................................................................................................................................................................................TGCTGAAGCAGCTCTGACT......................................................................................................191.000.001.00-----------------------------
....................................................................................................................................................................................................................................................................................TGCTGAAGCAGCTCTTGAAC.....................................................................................................201.000.001.00-----------------------------
..................................................................................................................................................................................................................................................................................TTTGCTGAAGCAGCTTATA........................................................................................................191.000.00----------------------1.00-------
................................................................................................................................................................................................................................................................................................................................................................TGGCACAGAGTTTTGCAAGCCGCTAAGACA...............3011.001.00--1.00---------------------------
.........................................................................................TCTGGCAGGCCTGTGGGCGCG...............................................................................................................................................................................................................................................................................................211.000.00------1.00-----------------------
...................................................................................................................................................................................................................................................................................................................................................................CACAGAGTTTTGCAAGCCGCTAAGACAGGT............3011.001.00--1.00---------------------------
...................................................................................................................................................................................................................................................................................................................................................................CACAGAGTTTTGCAAGCCGCTAAGACAGGTG...........3111.001.00--1.00---------------------------
.........................................................................................TCTGGCAGGCCTGTGGTACC................................................................................................................................................................................................................................................................................................201.000.00-------------1.00----------------
....................................................................................................................................................................................................................................................................................TGCTGAAGCAGCTCTGATC......................................................................................................191.000.001.00-----------------------------
......................................................................................................................................................CTCTGGGTCGGGGGCGGAC....................................................................................................................................................................................................................................191.000.00----------------1.00-------------
........................................................................................................................................................CTGGGTCGGGGGCTGGGGC..................................................................................................................................................................................................................................191.000.00--1.00---------------------------
.....................................................................................................................................................................................................................................................................................GCTGAAGCAGCTCTTGACT.....................................................................................................191.000.00-1.00----------------------------
...................................................................................................................................................................................................................................................................................TTGCTGAAGCAGCTCTGGA.......................................................................................................191.000.001.00-----------------------------
.................................................................................................................................................................................................................................................................................................................ACCTTATCTCTTAAAG............................................................................1690.330.33---------------------------0.22-0.11
.........................................................................................................................................................TGGGTCGGGGGCTGGA....................................................................................................................................................................................................................................1630.330.33------------------------0.33-----
..................................................................................................................................................................................................................................................CAGACTCACTGCTGTT...........................................................................................................................................1670.290.29-------------------------0.29----

Antisense strand
GTTTTCACAGCGACCAGTGGCCGTCACCTCGAGGGAAGCAGGAACCGCAGGTGAAGGGGGACGACCAGTGGCTTGGTGGTTACTGGGTTTCTGGCAGGCCTGTGGGGAGTAAACGAGATTGGTGTCACTTATCTCAGGATGGGGACGTCACTCTGGGTCGGGGGCTGGAGTCAGGCTGTGTGGCTCTCCAGGGGCAGGCCATTGCCATGGGCTGCAGCAGCTCTCCAGCTTGGTCCATGCCACAGACTCACTGCTGTTTTCTATGACAGCTTTTTTTGCTGAAGCAGCTCTTCCTTTCCCCACCTACCTTATCTCTTAAAGAGCCATCTCTTCTCTTCTGTGTTTAGGTGTTTGGCACAGAGTTTTGCAAGCCGCTAAGACAGGTGCTGAGGCCAGA
.................................................................................................................................................................................................................((((((..((((.....((((((((....)))).)).))....((((((......)))))).......))))..))))))............................................................................................................
.................................................................................................................................................................................................................210.....................................................................................298.................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR343336SRR040036(GSM532921)
G243N. (cervix)		SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		TAX577738(Rovira)
total RNA. (breast)		GSM532886(GSM532886)
G850T. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR343334SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335
........................................................................................................................................................................................................................GCAGCTCTCCAGCTTGGTG.................................................................................................................................................................. 192.000.00-------1.00---1.00------------------
.........................................................AGCCACTGGTCGTCCC.................................................................................................................................................................................................................................................................................................................................... 1611.001.00------------1.00-----------------
........................................................................................................................................................................................................................................................................................GAAGCAGCTCTTCCTTCTGC................................................................................................. 201.000.00----1.00-------------------------
...............................................................................................................................................................................................................................................AAACAGCAGTGAGTCTGTGG.......................................................................................................................................... 2011.001.00---------------------1.00--------
........................................................................................................................................................................................................................GCAGCTCTCCAGCTTGG.................................................................................................................................................................... 171.000.00-------------------1.00----------
......ACAGCGACCAGTGGCCGCTTG.................................................................................................................................................................................................................................................................................................................................................................................. 211.000.00--------------------1.00---------
........................................................................................................................................................................................................................GCAGCTCTCCAGCTTGGT................................................................................................................................................................... 181.000.00--------------1.00---------------
.............................................................................................................................................................................................................................................................................................AGCTCTTCCTTTCCCTTC.............................................................................................. 181.000.00-----------------1.00------------
.............................................................................................................................................................................................................................GTGGCATGGACCAAGCTGGAGA.......................................................................................................................................................... 2211.001.00------------------1.00-----------
........................................................................................................................................................................................................................GCAGCTCTCCAGCTTGGGTG................................................................................................................................................................. 201.000.00---1.00--------------------------
............................................CCGCAGGTGAAGGGGGG................................................................................................................................................................................................................................................................................................................................................ 171.000.00-1.00----------------------------
......................................................................................................................................................................................................................................................................................................................................TCTCTTCTCTTCTGTCGG..................................................... 181.000.00--------1.00---------------------
......................................................................................................................................................................................................................................................................................................TTTCCCCACCTACCTAAAA.................................................................................... 191.000.00-----1.00------------------------
........................................................................................................................................................................................................................GCAGCTCTCCAGCTTGGGGG................................................................................................................................................................. 201.000.00---1.00--------------------------
.......................................................................................................................................................................................................................................................................................TGAAGCAGCTCTTCCTTT.................................................................................................... 181.000.00---------1.00--------------------
...................................................................................................................................................................................................................CTGGAGAGCTGCTGCAG......................................................................................................................................................................... 1740.250.25--------------------------0.25---
...............................................................................................................................................................................................................................ATGGACCAAGCTGGA............................................................................................................................................................... 1580.120.12----------------------------0.12-