ID: uc002pfw.2_intron_5_0_chr19_47539388_f.5p
GENE: (6)
chr19:47539338-47539587+


(4)
B-CELL
(1)
BRAIN
(3)
BREAST
(10)
CELL-LINE
(5)
CERVIX
(2)
HEART
(7)
OTHER
(12)
SKIN
(1)
XRN.ip

Sense strand
CTCCTCTTCCTCCTCCTCTTCCTCTTCGCTTGCAGATACCCCCGAGATCGGTAATTCTAAGGGCTCCTAAAGAATGAAGTCTGAGGGTAGATCGGGGGACGCCCGCTGTACTGTATCCAGCCATGCCGCGTTTATACAAATAGCAGTGAAGTTAGAACTGTGTAGAACGAATCTTTGCAAAAGGAATCGGAGTATAAATTGAGGCGGTGAGACTTGGTTCCTTAAGCTTGCCAAACTCCCAAAGATTCGA
.......................................................................(((((..((.((.(((((...(((.((....)).))).....)))))...)).))..))))).....................................................................................................................
......................................................................71.................................................................138..............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR343335SRR343336SRR343334SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189785SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189782SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040037(GSM532922)
G243T. (cervix)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343337SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040034(GSM532919)
G001N. (cervix)
SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
GSM532874(GSM532874)
G699T. (cervix)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040017(GSM532902)
G645T. (cervix)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
...........................................................................GAAGTCTGAGGGTAGAT..............................................................................................................................................................1718.008.00---8.00----------------------------------------
..................................................................................................................ATCCAGCCATGCCGCGTGCA....................................................................................................................2016.004.002.003.001.00-----------------------------------------
...................................................................................................................TCCAGCCATGCCGCGTGTG....................................................................................................................1914.001.00-2.00-----------2.00------------------------------
..................................................................................................................ATCCAGCCATGCCGCGT.......................................................................................................................1714.004.001.001.001.00-------------------1.00---------------------
..................................................................................................................ATCCAGCCATGCCGCGTGTG....................................................................................................................2014.004.003.00-1.00-----------------------------------------
..................................................................................................................ATCCAGCCATGCCGCGTG......................................................................................................................1813.004.001.001.001.00-----------------------------------------
..................................................................................................................ATCCAGCCATGCCGCGTGAG....................................................................................................................2013.004.00----2.00-1.00-------------------------------------
...................................................................................................................TCCAGCCATGCCGCGTGC.....................................................................................................................1812.001.00-------1.00------------1.00-----------------------
..................................................................................................................ATCCAGCCATGCCGC.........................................................................................................................1512.002.00--1.00--------1.00--------------------------------
..................................................................................................................ATCCAGCCATGCCGCGTGAGT...................................................................................................................2112.004.00------2.00-------------------------------------
...................................................................................................................TCCAGCCATGCCGCGTG......................................................................................................................1712.001.00-1.00---------1.00--------------------------------
..................................................................................................................ATCCAGCCATGCCGCGTGT.....................................................................................................................1912.004.00--1.00--------------------------1.00--------------
...................................................................................................................TCCAGCCATGCCGCGTGCA....................................................................................................................1912.001.002.00-------------------------------------------
..........................................................................................................................................................................ATCTTTGCAAAAGGAATCGG............................................................2012.002.00------------------1.00------------------1.00------
....................................................................................................................CCAGCCATGCCGCGT.......................................................................................................................1532.002.000.670.330.33-----------0.33-----------------------0.33-----
..................................................................................................................ATCCAGCCATGCCGCGGGCA....................................................................................................................2011.001.001.00-------------------------------------------
..................................................................................................................ATCCAGCCATGCCGCG........................................................................................................................1611.001.001.00-------------------------------------------
.........................................................................................................................................................AGAACTGTGTAGAACGAATCTTTGCAAAAGG..................................................................3111.001.00------------------------------1.00-------------
...................................................................................................................TCCAGCCATGCCGCGTGCGG...................................................................................................................2011.001.00--------------------------1.00-----------------
......................................................................AGAATGAAGTCTGAGGGTAGA...............................................................................................................................................................2111.001.00---------------------------------1.00----------
.................................................................CCTAAAGAATGAAGTCTGAGGGTAGATC.............................................................................................................................................................2811.001.00------------1.00-------------------------------
...................................................................................................................TCCAGCCATGCCGCGTGATT...................................................................................................................2011.001.00----1.00---------------------------------------
...................TCCTCTTCGCTTGCAA.......................................................................................................................................................................................................................161.000.00----------------------------------1.00---------
..................................................................................................................ATCCAGCCATGCCGCGTGA.....................................................................................................................1911.004.00-----------------------------------1.00--------
...................................................................................................................TCCAGCCATGCCGCGT.......................................................................................................................1611.001.00-1.00------------------------------------------
............................................................................................................................................................ACTGTGTAGAACGAATCTTTGC........................................................................2211.001.00-----1.00--------------------------------------
.......................................................................GAATGAAGTCTGAGGGTAGATCGG...........................................................................................................................................................2411.001.00-----1.00--------------------------------------
.............................................................................................................................................................CTGTGTAGAACGAATCTTTGCAAAAG...................................................................2611.001.00-----1.00--------------------------------------
.....................................................................AAGAATGAAGTCTGAGGGTAGATCGG...........................................................................................................................................................2611.001.00-----1.00--------------------------------------
...................................................................................................................TCCAGCCATGCCGCGTGAGT...................................................................................................................2011.001.00----1.00---------------------------------------
..................................................................................................................ATCCAGCCATGCCGCGCGCA....................................................................................................................2011.001.00--1.00-----------------------------------------
.................................................................CCTAAAGAATGAAGTCTGAGGG...................................................................................................................................................................2211.001.00-----1.00--------------------------------------
..........................................................................................................................................................GAACTGTGTAGAACGAATCTTTGC........................................................................2411.001.00------------1.00-------------------------------
..................................................................................................................ATCCAGCCATGCCGCGTGC.....................................................................................................................1911.004.00--1.00-----------------------------------------
..................................................................................................................ATCCAGCCATGCCGCGTGAA....................................................................................................................2011.004.00----1.00---------------------------------------
.....CTTCCTCCTCCTCTTCCTAT.................................................................................................................................................................................................................................201.000.00---------------------1.00----------------------
....................................................................................................................CCAGCCATGCCGCGTGCA....................................................................................................................1830.672.00-------0.33---------------------------------0.33--
....................................................................................................................CCAGCCATGCCGCGTGT.....................................................................................................................1730.672.00---------------------------------------0.67----
....................................................................................................................CCAGCCATGCCGCGTGCGG...................................................................................................................1930.672.00----0.33-----------------------------------0.33---
.........................................................................ATGAAGTCTGAGGGTAGA...............................................................................................................................................................1820.500.50-----0.50--------------------------------------
....................................................................................................................CCAGCCATGCCGCGTGCG....................................................................................................................1830.332.00-0.33------------------------------------------
....................................................................................................................CCAGCCATGCCGCGTGTA....................................................................................................................1830.332.00--------------------------------------0.33-----
....................................................................................................................CCAGCCATGCCGCGTGCAG...................................................................................................................1930.332.00--------------0.33-----------------------------

Antisense strand
CTCCTCTTCCTCCTCCTCTTCCTCTTCGCTTGCAGATACCCCCGAGATCGGTAATTCTAAGGGCTCCTAAAGAATGAAGTCTGAGGGTAGATCGGGGGACGCCCGCTGTACTGTATCCAGCCATGCCGCGTTTATACAAATAGCAGTGAAGTTAGAACTGTGTAGAACGAATCTTTGCAAAAGGAATCGGAGTATAAATTGAGGCGGTGAGACTTGGTTCCTTAAGCTTGCCAAACTCCCAAAGATTCGA
.......................................................................(((((..((.((.(((((...(((.((....)).))).....)))))...)).))..))))).....................................................................................................................
......................................................................71.................................................................138..............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR343335SRR343336SRR343334SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189785SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189782SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040037(GSM532922)
G243T. (cervix)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343337SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040034(GSM532919)
G001N. (cervix)
SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
GSM532874(GSM532874)
G699T. (cervix)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040017(GSM532902)
G645T. (cervix)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
...CTCTTCCTCCTCCTCTTCC.................................................................................................................................................................................................................................... 193.000.00----------2.00-----------------1.00---------------
...CTCTTCCTCCTCCTCTTCCCT.................................................................................................................................................................................................................................. 211.000.00------------------------1.00-------------------
....GAAGAGGAAGAGGAGGAGGAAGA............................................................................................................................................................................................................................... 2301.001.00--------1.00-----------------------------------
......................................................................................................CTGGATACAGTACAGCGG.................................................................................................................................. 1811.001.00------------------------------------1.00-------
...CTCTTCCTCCTCCTCTTCCCC.................................................................................................................................................................................................................................. 211.000.00---------1.00----------------------------------
..........TCCTCCTCTTCCTCTTCGCG............................................................................................................................................................................................................................ 201.000.00-------1.00------------------------------------
...CTCTTCCTCCTCCTCTTCCAA.................................................................................................................................................................................................................................. 211.000.00-------------------------1.00------------------
.TCCTCTTCCTCCTCCTCTTCCTTT................................................................................................................................................................................................................................. 241.000.00-----------------------1.00--------------------
.....................................................................................................................................................................................................................GCAAGCTTAAGGAACCAA................... 1811.001.00---------1.00----------------------------------
...AGAGGAGGAGGAAGAG....................................................................................................................................................................................................................................... 1601.001.00--------------------------------1.00-----------
...AGCGAAGAGGAAGAGGAGGAGGAAGAG............................................................................................................................................................................................................................ 2711.001.00--------------1.00-----------------------------
...CTCTTCCTCCTCCTCTTCCCG.................................................................................................................................................................................................................................. 211.000.00---------------------------1.00----------------
............................................................................................ACAGCGGGCGTCCCCCG............................................................................................................................................. 1711.001.00----1.00---------------------------------------
.TCCTCTTCCTCCTCCTCTTCCTCAGA............................................................................................................................................................................................................................... 261.000.00---------------1.00----------------------------
.....CTTCCTCCTCCTCTTCCG................................................................................................................................................................................................................................... 181.000.00--------1.00-----------------------------------
.....CTTCCTCCTCCTCTTCCGTGG................................................................................................................................................................................................................................ 211.000.00-------------------1.00------------------------
......TTCCTCCTCCTCTTCCTCTTCGCAGGG......................................................................................................................................................................................................................... 271.000.00----------------1.00---------------------------
....................................................................................................GCCCGCTGTACTGTAACCA................................................................................................................................... 191.000.00-----------------1.00--------------------------
...CTCTTCCTCCTCCTCTTCCC................................................................................................................................................................................................................................... 201.000.00-------------------------------1.00------------
.......CGAAGAGGAAGAGGAGGAGGA.............................................................................................................................................................................................................................. 2170.290.29--------0.14----------------------------------0.14
...............................................................................................................................................AGTTCTAACTTCACTG........................................................................................... 1660.170.17------------------------------------------0.17-
........CGAAGAGGAAGAGGAGGAGG.............................................................................................................................................................................................................................. 2070.140.14---------------0.14----------------------------