ID: uc002per.3_intron_1_0_chr19_46974372_r
GENE: (1)
chr19:46974322-46974643-


(3)
AGO2.ip 		(1)
B-CELL 		(3)
BRAIN 		(6)
BREAST 		(12)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(3)
HEART 		(1)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(12)
SKIN 		(1)
TESTES

Sense strand
TCCACTGCGTCTCCTTGGCCTGGCTGGGCGGTCGGAGGCTGATCTGCCAAGTAAGTCCCGGCTGGGCAGGCGGAGCGTCAGGCCCGGGGGAGGGTCCTAGGGCCTTTTGCTGCAGATTCAGGGACACGTGTGAGCACCGGGGCCTGGGTTGGGGAGGAGGGTGTTGGGAAAGCGCCAGGCCTCCTGCAGGCCAGCCGCGGAGGGGGCAGCTAGGATCTGTGAGCTTGGTCATCTTCCTGGGAACGTGACCTCGCTCCCTTGTCACCTTGCAGGATTACTGTTTGGAGACCGCTGCAGCCCACGTCCACCTGATAGACTATTT
..........................................................................((.....((((......))))(((((.((((((..((.((.(((((((.....(((....))).....))))))))).))..)))))).)))))...)).....................................................................................................................................................
......................................................................71.....................................................................................................174..................................................................................................................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189784SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR040018(GSM532903)
G701N. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM956925PAZD5SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...........................................................................CGTCAGGCCCGGGGGAG......................................................................................................................................................................................................................................17128.0028.0024.00------3.00---------------------------------1.00-----
...........................................................................CGTCAGGCCCGGGGGA.......................................................................................................................................................................................................................................1619.009.00---3.00-3.00----2.00-1.00----------------------------------
...........................................................................CGTCAGGCCCGGGGGAGG.....................................................................................................................................................................................................................................1813.003.00---------------1.00--------1.00--1.00-------------------
.....................................................................................................................................................TGGGGAGGAGGGTGTTGTGGT........................................................................................................................................................212.000.00---------2.00-------------------------------------
............................................................................GTCAGGCCCGGGGGAGGTT...................................................................................................................................................................................................................................1912.001.00-------------------1.00---------------1.00-----------
....................................................................................................................................................TTGGGGAGGAGGGTGTTTTG..........................................................................................................................................................202.000.00-1.00---------------1.00-----------------------------
.............................................................................TCAGGCCCGGGGGAGGT....................................................................................................................................................................................................................................1721.501.50--0.50-0.50--------------------------------------0.50---
.............................................................................TCAGGCCCGGGGGAGG.....................................................................................................................................................................................................................................1621.501.50--1.000.50-------------------------------------------
...............................................................................................................................................................................................................................................................CCCTTGTCACCTTGCAGGATTACTGTT........................................2711.001.00-------------------------------1.00---------------
...............................................................................................................................................................................................CAGCCGCGGAGGGGGCGCCG...............................................................................................................201.000.00------1.00----------------------------------------
................................................................................GGCCCGGGGGAGGGTCTCT...............................................................................................................................................................................................................................191.000.00----------------------------------------1.00------
....................................................................................................................................AGCACCGGGGCCTGGAGC............................................................................................................................................................................181.000.00------1.00----------------------------------------
............................................................................GTCAGGCCCGGGGGAGGT....................................................................................................................................................................................................................................1811.001.00-----------1.00-----------------------------------
....................................................................................................................................................TTGGGGAGGAGGGTGTTTAAT.........................................................................................................................................................211.000.00-1.00---------------------------------------------
....................................................................................................................................................TTGGGGAGGAGGGTGTTTATT.........................................................................................................................................................211.000.00-1.00---------------------------------------------
..............................................................................................................................................................................................................................................GGGAACGTGACCTCGTCTG.................................................................191.000.00---------------------1.00-------------------------
............................................................................GTCAGGCCCGGGGGAG......................................................................................................................................................................................................................................1611.001.001.00----------------------------------------------
..............................................................................CAGGCCCGGGGGAGGTTA..................................................................................................................................................................................................................................181.000.00--------------------1.00--------------------------
..............................................................................CAGGCCCGGGGGAGGTTCT.................................................................................................................................................................................................................................191.000.00-----------------------1.00-----------------------
............................................................................GTCAGGCCCGGGGGAGG.....................................................................................................................................................................................................................................1711.001.00-------------------------1.00---------------------
....................................................................................................................................................TTGGGGAGGAGGGTGTCTAG..........................................................................................................................................................201.000.00------------------------------1.00----------------
................................................................................GGCCCGGGGGAGGGTCTC................................................................................................................................................................................................................................181.000.00----------------1.00------------------------------
....................................................................................................................................AGCACCGGGGCCTGGGTCCCG.........................................................................................................................................................................211.000.00------1.00----------------------------------------
...........................................................................CGTCAGGCCCGGGGGAGGT....................................................................................................................................................................................................................................1911.003.00----------------------1.00------------------------
.........................................................................................................................................................................................................................................................................................TTGGAGACCGCTGCAGCCCACG...................2211.001.00------------------1.00----------------------------
....................................................................................................................................................TTGGGGAGGAGGGTGTTTGGT.........................................................................................................................................................211.000.00---------------------------------1.00-------------
.....................................................................................................................................................................................................................................................................................................GCAGCCCACGTCCACCTGATAGACTAC..271.000.00-------------1.00---------------------------------
..............TTGGCCTGGCTGGGCGGTCGGAGGC...........................................................................................................................................................................................................................................................................................2511.001.00--------------1.00--------------------------------
....................................................................................................................................................................................................................................TCATCTTCCTGGGAACGCTT..........................................................................201.000.00--------1.00--------------------------------------
....................................................................................................................................................................................................................................................................................ACTGTTTGGAGACCGCTG............................1811.001.00----------------------------------1.00------------
.......................................................................................................................................................................................................................................................................................GTTTGGAGACCGCTGAA..........................171.000.00----------------------------1.00------------------
...........................................................................CGTCAGGCCCGGGGGAGGTTCT.................................................................................................................................................................................................................................2211.003.00-----------------------------1.00-----------------
....................................................................................................................................................TTGGGGAGGAGGGTGTTTAT..........................................................................................................................................................201.000.00-1.00---------------------------------------------
............................................................................GTCAGGCCCGGGGGAGGTTC..................................................................................................................................................................................................................................2011.001.001.00----------------------------------------------
................................................................................GGCCCGGGGGAGGGTCTCTC..............................................................................................................................................................................................................................201.000.00-------------------------------------1.00---------
..................CCTGGCTGGGCGGTCCGC..............................................................................................................................................................................................................................................................................................181.000.00--------------------------------1.00--------------
.............................................................................TCAGGCCCGGGGGAG......................................................................................................................................................................................................................................1540.750.75---------------------------------------0.50-----0.25-
...........................................................................CGTCAGGCCCGGGGG........................................................................................................................................................................................................................................1540.750.750.25--------------------------------------0.50-------
............................................................................................................................................................GAGGGTGTTGGGAAAGC.....................................................................................................................................................1740.250.25--------------------------------------------0.25--
..................................................................................................................................................GGTTGGGGAGGAGGGTG...............................................................................................................................................................1790.110.11----------------------------------------------0.11

Antisense strand
TCCACTGCGTCTCCTTGGCCTGGCTGGGCGGTCGGAGGCTGATCTGCCAAGTAAGTCCCGGCTGGGCAGGCGGAGCGTCAGGCCCGGGGGAGGGTCCTAGGGCCTTTTGCTGCAGATTCAGGGACACGTGTGAGCACCGGGGCCTGGGTTGGGGAGGAGGGTGTTGGGAAAGCGCCAGGCCTCCTGCAGGCCAGCCGCGGAGGGGGCAGCTAGGATCTGTGAGCTTGGTCATCTTCCTGGGAACGTGACCTCGCTCCCTTGTCACCTTGCAGGATTACTGTTTGGAGACCGCTGCAGCCCACGTCCACCTGATAGACTATTT
..........................................................................((.....((((......))))(((((.((((((..((.((.(((((((.....(((....))).....))))))))).))..)))))).)))))...)).....................................................................................................................................................
......................................................................71.....................................................................................................174..................................................................................................................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189784SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR040018(GSM532903)
G701N. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM956925PAZD5SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..............................................................................................................................................................................................CCAGCCGCGGAGGGGGG................................................................................................................... 172.000.00--1.00-1.00------------------------------------------
..............................................................................................................................................................................................CCCCCTCCGCGGCTGG.................................................................................................................... 1612.002.00--1.00-1.00------------------------------------------
.....................................................................................................................................................................................................CGGAGGGGGCAGCTAGTTT.......................................................................................................... 191.000.00--------1.00--------------------------------------
....................................................................................CGGGGGAGGGTCCTAACC............................................................................................................................................................................................................................ 181.000.00--------------------------1.00--------------------
..............................................................................................................................................................................................CCAGCCGCGGAGGGGGGG.................................................................................................................. 181.000.00----1.00------------------------------------------
.......CCAGCCAGGCCAAGGAGACG....................................................................................................................................................................................................................................................................................................... 2011.001.00------------------------------------1.00----------
.................................................................................GACCCTCCCCCGGGC.................................................................................................................................................................................................................................. 1520.500.50------------------------------------------0.50----
.....................................................................................................................................................................................................................................................AAGGGAGCGAGGTCA.............................................................. 1520.500.50-----------0.50-----------------------------------
.........................CAGCCTCCGACCGCCC......................................................................................................................................................................................................................................................................................... 1630.330.33------------------------------------------0.33----