ID: uc002pbq.1_intron_0_0_chr19_45909977_f
GENE: CD3EAP(1)
chr19:45909927-45910401+


(10)
B-CELL 		(4)
BREAST 		(18)
CELL-LINE 		(3)
CERVIX 		(2)
HELA 		(4)
OTHER 		(13)
SKIN

Sense strand
CAGGGTTGCCTGAGGTGTGGGTCCCAGGATGGAGGAGCCCCAGGCCGGCGGTGAGGGTGCGGGTTGACGGGGTGCGGAGGGTGCGTTGGTGGAAGGAGAAAGGGGCGTCCGAGAGGGTTCGGGCGGAAAAGGAGGCGTACCTGCAAGCAGGACTTGCGAAGAGCGTGCATTCCCAGTGGGCGAACGGGAATTCGAACGGAGAGAGGGTTATCTTGTGGGGGGCTACCCGTGGAGAGCAAGGCGCCCCCAGGGGTTGGATCGGTGAAATTGAGGTCGCCCCTGGGGAACAGGTGGGCAGAAAGGAGAAACCAGGTTGAGGGGACTGGAGTGCTCACGAGGTTAAGACCAATGGACCGATAGGCGCGCCCTGCAAGATTGGACCGGCAAGGAGGTGTCAGTCGACCCCATTTCCCCTTCTGCTGCAGATGCTGCTCGGTTCTCTTGTCCCCCCAACTTTACCGCGAAGCCCCCAGCC
..................................................................................................................................................................................................................................((((((..(((.......((((((((((..((((...........)))))))))))))).....(((((((....((.....))...((.((....)).)).)))))))...)))....))).)))...........................................................................................................................
................................................................................................................................................................................................................................225..................................................................................................................................358...................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189783SRR040016(GSM532901)
G645N. (cervix)		GSM532880(GSM532880)
G659T. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189782SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040007(GSM532892)
G601T. (cervix)		TAX577739(Rovira)
total RNA. (breast)		SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR038853(GSM458536)
MELB. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR343337SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
................................................................................................................................................................................................................................................................................................................................................AGGTTAAGACCAATGGAC.........................................................................................................................18137.0037.0019.0018.00----------------------------------------------------
........................CAGGATGGAGGAGCCGTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................195.000.00----2.00---2.00---------------------------1.00-----------------
.AGGGTTGCCTGAGGTGTGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.004.00--4.00---------------------------------------------------
........................CAGGATGGAGGAGCCCCAGGCCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2513.003.00--3.00---------------------------------------------------
.......................CCAGGATGGAGGAGCCCCAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2213.003.00---2.00------------------------------------1.00-------------
.........................AGGATGGAGGAGCCCCAGGCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2313.003.00--2.00-1.00-------------------------------------------------
............AGGTGTGGGTCCCAGGATGGAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002.00--2.00---------------------------------------------------
......................CCCAGGATGGAGGAGCCCCAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002.00---------2.00--------------------------------------------
............AGGTGTGGGTCCCAGGATGGAGGAGCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002.00-------2.00----------------------------------------------
......................CCCAGGATGGAGGAGCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002.00-------------------------1.00----------------1.00-----------
.....................TCCCAGGATGGAGGAGCCCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00-----------------------------------------1.00------------
.......................................................................................................................................................................................................................................................CAGGGGTTGGATCGG.....................................................................................................................................................................................................................1511.001.00---------------------------------------------1.00--------
.....................................................................................................................................................................................................................................TGGAGAGCAAGGCGCCCCCAGGGGC.............................................................................................................................................................................................................................2511.001.00-----------1.00------------------------------------------
........................CAGGATGGAGGAGCCGTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00------------------------------------------------1.00-----
....................GTCCCAGGATGGAGGAGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00---1.00--------------------------------------------------
.AGGGTTGCCTGAGGTGTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00-----------------------------1.00------------------------
.....................................................................................................................................................................................................................................TGGAGAGCAAGGCGCCCCCAGGGG..............................................................................................................................................................................................................................2411.001.00-----1.00------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................GCAAGGAGGTGTCAGTGGTA........................................................................201.000.00-----------------------------------1.00------------------
..................................................................................................................................................GCAGGACTTGCGAAGAGCGTGCA..................................................................................................................................................................................................................................................................................................................2311.001.00-----------------------------------------------1.00------
.....................TCCCAGGATGGAGGAGCCCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00------------1.00-----------------------------------------
.......................................................................................................................................................................................................................TGGGGGGCTACCCGTGATT.................................................................................................................................................................................................................................................191.000.00----------------------------1.00-------------------------
........................CAGGATGGAGGAGCCGTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-----------------1.00------------------------------------
......................CCCAGGATGGAGGAGCCCCAGGCCGGCGGTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................3311.001.00------------------1.00-----------------------------------
.....................TCCCAGGATGGAGGAGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00------1.00-----------------------------------------------
.............................................................................AGGGTGCGTTGGTGGTATA...........................................................................................................................................................................................................................................................................................................................................................................................191.000.00----------------------------------------------1.00-------
.......................CCAGGATGGAGGAGCGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00----1.00-------------------------------------------------
............................ATGGAGGAGCCCCAGGCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00-----------------------1.00------------------------------
......................................................................................................................................................................................AACGGGAATTCGAACGGA...................................................................................................................................................................................................................................................................................1811.001.00--------------------1.00---------------------------------
............AGGTGTGGGTCCCAGGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-------------------------------------1.00----------------
...................................................TGAGGGTGCGGGTTGAATGG....................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00-------------------1.00----------------------------------
........................CAGGATGGAGGAGCCGCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00------------------------1.00-----------------------------
....................................................................................................................................................................................................................................................................................................GGGCAGAAAGGAGAAACCAGGTTGAGGGGACC.......................................................................................................................................................321.000.00-----1.00------------------------------------------------
...................................................TGAGGGTGCGGGTTGAGTGG....................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00---------------------1.00--------------------------------
........................................................................................GTGGAAGGAGAAAGGGGGCGC..............................................................................................................................................................................................................................................................................................................................................................................211.000.00---------------------------------------------------1.00--
...................................................................................................................GGTTCGGGCGGAAAAAAA......................................................................................................................................................................................................................................................................................................................................................181.000.00--------------------------------1.00---------------------
.......................CCAGGATGGAGGAGCCCCAGGCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00----------------------1.00-------------------------------
.......................................................................................................................................................................................................................................................................GAAATTGAGGTCGCCCCTGGGGAACAGGT.......................................................................................................................................................................................2911.001.00--------------------------1.00---------------------------
......................................................................................................................................................................................................................................................................................................................................................AGACCAATGGACCGATAGGCG................................................................................................................2111.001.00--1.00---------------------------------------------------
.....TTGCCTGAGGTGTGGGTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00---------------------------------------1.00--------------
......................CCCAGGATGGAGGAGCCCCAGGCCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001.00--1.00---------------------------------------------------
................................................................................................................................................................................................................................ACCCGTGGAGAGCAAAACC........................................................................................................................................................................................................................................191.000.00-------------------------------1.00----------------------
..........................................................................................................................................................................................................................................................................................................................................................................................GACCGGCAAGGAGGTGTCAGT............................................................................2111.001.00-------------------------------------------1.00----------
............................ATGGAGGAGCCCCAGGCCGGCGGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................251.000.00-----------1.00------------------------------------------
...............................................................................GGTGCGTTGGTGGAATAGT.........................................................................................................................................................................................................................................................................................................................................................................................191.000.00-------------------------------------------------1.00----
........................................................................................................................................................................................................................................................................................................................GTTGAGGGGACTGGAGTGCTCACGA..........................................................................................................................................2511.001.00-------------1.00----------------------------------------
........................CAGGATGGAGGAGCCCCAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00----------1.00-------------------------------------------
.......................................................................................................................................................................................ACGGGAATTCGAACGG....................................................................................................................................................................................................................................................................................1611.001.00---1.00--------------------------------------------------
......................................................................................................................................................................................................................................................................................................................AGGTTGAGGGGACTGGAGTGCTCA.............................................................................................................................................2411.001.00-------------1.00----------------------------------------
.....................................................................................................................................................................................................................................TGGAGAGCAAGGCGCCCCCAGGGGTTGGCCCG......................................................................................................................................................................................................................321.000.00-----1.00------------------------------------------------
.........................AGGATGGAGGAGCCCCAGGCCGGCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00--1.00---------------------------------------------------
................................................................................................................................................AAGCAGGACTTGCGAT...........................................................................................................................................................................................................................................................................................................................161.000.00----------------------------------------------------1.00-
................GTGGGTCCCAGGATGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00---1.00--------------------------------------------------
............................................................................................................................................CTGCAAGCAGGACTTTGAG............................................................................................................................................................................................................................................................................................................................191.000.00--------------------------------------------------1.00---
.............................................................................AGGGTGCGTTGGTGGA..............................................................................................................................................................................................................................................................................................................................................................................................1620.500.50-----------------------------------------------------0.50
.......................................................................................................................................................................................................................................................................................................................GGTTGAGGGGACTGGA....................................................................................................................................................1630.330.33------0.33-----------------------------------------------

Antisense strand
CAGGGTTGCCTGAGGTGTGGGTCCCAGGATGGAGGAGCCCCAGGCCGGCGGTGAGGGTGCGGGTTGACGGGGTGCGGAGGGTGCGTTGGTGGAAGGAGAAAGGGGCGTCCGAGAGGGTTCGGGCGGAAAAGGAGGCGTACCTGCAAGCAGGACTTGCGAAGAGCGTGCATTCCCAGTGGGCGAACGGGAATTCGAACGGAGAGAGGGTTATCTTGTGGGGGGCTACCCGTGGAGAGCAAGGCGCCCCCAGGGGTTGGATCGGTGAAATTGAGGTCGCCCCTGGGGAACAGGTGGGCAGAAAGGAGAAACCAGGTTGAGGGGACTGGAGTGCTCACGAGGTTAAGACCAATGGACCGATAGGCGCGCCCTGCAAGATTGGACCGGCAAGGAGGTGTCAGTCGACCCCATTTCCCCTTCTGCTGCAGATGCTGCTCGGTTCTCTTGTCCCCCCAACTTTACCGCGAAGCCCCCAGCC
..................................................................................................................................................................................................................................((((((..(((.......((((((((((..((((...........)))))))))))))).....(((((((....((.....))...((.((....)).)).)))))))...)))....))).)))...........................................................................................................................
................................................................................................................................................................................................................................225..................................................................................................................................358...................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189783SRR040016(GSM532901)
G645N. (cervix)		GSM532880(GSM532880)
G659T. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189782SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040007(GSM532892)
G601T. (cervix)		TAX577739(Rovira)
total RNA. (breast)		SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR038853(GSM458536)
MELB. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR343337SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGCGGTAAAGTTGG......... 1711.001.00---------------1.00--------------------------------------
..................................................................................................................................................................TCGCCCACTGGGAATGCACGC.................................................................................................................................................................................................................................................................................................... 2111.001.00----------------1.00-------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGGGTCGACTGA................................................................ 1711.001.00---------------------------------1.00--------------------
....................................................................................................................................................................................................................................................................................................................................GGAGTGCTCACGAGGGG...................................................................................................................................... 171.000.00------------------------------1.00-----------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCCTTCTGCTGCCTCA................................................ 191.000.00--------------1.00---------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGCTCGGTTCTCGG................................ 181.000.00----------------------------------1.00-------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCTTGTCCCCCCAGAA.................... 191.000.00--------------------------------------1.00---------------
...................................................................................................................................................CGCTCTTCGCAAGTCCTG...................................................................................................................................................................................................................................................................................................................... 1811.001.00------------1.00-----------------------------------------
.....................................................................................................................................................................................CTCTCCGTTCGAATTCCCGTTC................................................................................................................................................................................................................................................................................ 2211.001.00---------------------------1.00--------------------------
...............................................CGTCAACCCGCACCCTCACCGC...................................................................................................................................................................................................................................................................................................................................................................................................................... 2211.001.00----------1.00-------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCGGTAAAGTTGG.......... 1611.001.00--------------------------------------------1.00---------
...................................................................................................................................................................................................................................................................................................................................................TTAAGACCAATGGACAA....................................................................................................................... 171.000.00--------------1.00---------------------------------------