ID: uc002pak.2_intron_6_0_chr19_45561157_f.5p
GENE: (7)
chr19:45561107-45561356+


(5)
B-CELL 		(1)
BRAIN 		(6)
BREAST 		(11)
CELL-LINE 		(7)
CERVIX 		(2)
HEART 		(6)
LIVER 		(2)
OTHER 		(17)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GGCCGAGGAGGAGAGCAACTCGGACGAAGATGAGGTCATCCCCGACATCGGTGGGGTCCCCTCTCTGCCCTCCCCACCTGCAGTCCCTGGGCATCGTTTCTGTGTCTCGTCCCTCACCCTCTGTGGGGCACCCCGTGCTTACGAACCGTGTCTCTCTCCCTACCCCGCCCCAGGGCACACCAGCCTCCTGCTGCCCCTGTCTCACTCCTGTCCTCCTCCGTTCCGGCCTTCCTCTGCCTCACTCATCTCT
.................................................(((((((...............)))))))....(((....)))..............................................................................................................................................................
............................................45.......................................................102..................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189782SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR040028(GSM532913)
G026N. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577590(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR040010(GSM532895)
G529N. (cervix)		SRR189787SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040016(GSM532901)
G645N. (cervix)		SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR040031(GSM532916)
G013T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR191429(GSM715539)
166genomic small RNA (size selected RNA from . (breast)		SRR040012(GSM532897)
G648N. (cervix)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038853(GSM458536)
MELB. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................GCAGTCCCTGGGCATATAC........................................................................................................................................................1921.000.007.004.00--1.00-----2.00----1.00---1.00---1.00--------1.001.00--------------1.00--1.00---------
................AACTCGGACGAAGATGAG........................................................................................................................................................................................................................18111.0011.00---2.00------------2.00------------------1.00--1.001.00---1.00--1.00-------1.00-1.00----
...............................................................................GCAGTCCCTGGGCATCTACA.......................................................................................................................................................207.000.00--5.00-1.00-----1.00--------------------------------------------------
.................ACTCGGACGAAGATGAG........................................................................................................................................................................................................................1716.006.00-------3.00---------2.00-------------------------------1.00-----------
................AACTCGGACGAAGATGAGGT......................................................................................................................................................................................................................2013.003.00----1.00------2.00-------------------------------------------------
...............................................................................GCAGTCCCTGGGCATATAT........................................................................................................................................................192.000.00-------------------1.00--------------------1.00--------------------
..............................................................................TGCAGTCCCTGGGCATCTGCA.......................................................................................................................................................212.000.00-------------1.00--------------1.00--------------------------------
.............AGCAACTCGGACGAAGATGAGGTC.....................................................................................................................................................................................................................2412.002.00---2.00---------------------------------------------------------
.................ACTCGGACGAAGATGA.........................................................................................................................................................................................................................1612.002.00------1.00-----------------------------------1.00------------------
........AGGAGAGCAACTCGGACGAAG.............................................................................................................................................................................................................................2112.002.00----2.00--------------------------------------------------------
...............................................................................GCAGTCCCTGGGCATCTACC.......................................................................................................................................................202.000.00--------------------------1.00--------------1.00-------------------
..........GAGAGCAACTCGGACGAAGA............................................................................................................................................................................................................................2012.002.00---2.00---------------------------------------------------------
...............CAACTCGGACGAAGATGAGGTCAT...................................................................................................................................................................................................................2412.002.00---------2.00---------------------------------------------------
..............................................................................TGCAGTCCCTGGGCATATAT........................................................................................................................................................201.000.00-------------------------------1.00-----------------------------
.............................................................................CTGCAGTCCCTGGGCGTCT..........................................................................................................................................................191.000.00------------------------------------1.00------------------------
.............................................................................CTGCAGTCCCTGGGCATA...........................................................................................................................................................181.000.00-1.00-----------------------------------------------------------
.............AGCAACTCGGACGAAGATG..........................................................................................................................................................................................................................1911.001.00-----1.00-------------------------------------------------------
.......GAGGAGAGCAACTCGGACGAAGATGAG........................................................................................................................................................................................................................2711.001.00--------1.00----------------------------------------------------
...........AGAGCAACTCGGACGAAGATGAG........................................................................................................................................................................................................................2311.001.00-----1.00-------------------------------------------------------
.........GGAGAGCAACTCGGACGAAGA............................................................................................................................................................................................................................2111.001.00--------------------1.00----------------------------------------
.................ACTCGGACGAAGATG..........................................................................................................................................................................................................................1511.001.00---------------------1.00---------------------------------------
...............................................................................GCAGTCCCTGGGCATCTAC........................................................................................................................................................191.000.00---------------1.00---------------------------------------------
........................................................................................GGGCATCGTTTCTGTCTC................................................................................................................................................181.000.00---------------------------1.00---------------------------------
........AGGAGAGCAACTCGGACGAAGATGA.........................................................................................................................................................................................................................2511.001.00---------------------------------------------1.00---------------
...............................................................................GCAGTCCCTGGGCATATA.........................................................................................................................................................181.000.00-----------------------------------------------1.00-------------
.....AGGAGGAGAGCAACTCGGA..................................................................................................................................................................................................................................1911.001.00-----1.00-------------------------------------------------------
.........................................................CCCCTCTCTGCCCTCCCCCGC............................................................................................................................................................................211.000.00--------1.00----------------------------------------------------
...............................................................................GCAGTCCCTGGGCATCCA.........................................................................................................................................................181.000.00-----------------------------1.00-------------------------------
....................................................................................................................................................................................................................CTCCTCCGTTCCGGCCTTC...................1911.001.00-------------------------------------------------------1.00-----
...........AGAGCAACTCGGACGAAGATGAGGT......................................................................................................................................................................................................................2511.001.00------1.00------------------------------------------------------
...............................................................................GCAGTCCCTGGGCATACAC........................................................................................................................................................191.000.00------------1.00------------------------------------------------
..........................................................................CACCTGCAGTCCCTGGGCATCGTTTCT.....................................................................................................................................................2711.001.00-----------------------------------------------------1.00-------
...........................................................CCTCTCTGCCCTCCCCATTGT..........................................................................................................................................................................211.000.00------------------------1.00------------------------------------
..............................................................................................CGTTTCTGTGTCTCGGG...........................................................................................................................................171.000.00--------1.00----------------------------------------------------
.........GGAGAGCAACTCGGACGAAGATGAG........................................................................................................................................................................................................................2511.001.00-------------------------1.00-----------------------------------
..........GAGAGCAACTCGGACGAAGATG..........................................................................................................................................................................................................................2211.001.00------------------1.00------------------------------------------
..............GCAACTCGGACGAAGATGAGG.......................................................................................................................................................................................................................2111.001.00--------------------------------------------1.00----------------
...............................................................................GCAGTCCCTGGGCATCATC........................................................................................................................................................191.000.001.00------------------------------------------------------------
..........GAGAGCAACTCGGACGAAGATGAGGT......................................................................................................................................................................................................................2611.001.00------------------------------1.00------------------------------
.............AGCAACTCGGACGAAGATGAGGT......................................................................................................................................................................................................................2311.001.00----------------------------------------------------1.00--------
..............................................................................TGCAGTCCCTGGGCATCTCCC.......................................................................................................................................................211.000.00--1.00----------------------------------------------------------
.............................................................................CTGCAGTCCCTGGGCATCTA.........................................................................................................................................................201.000.00-------------1.00-----------------------------------------------
.................................................GGTGGGGTCCCCTCTCG........................................................................................................................................................................................171.000.00--------------------------------------------------1.00----------
...............................................................................GCAGTCCCTGGGCATCTCCA.......................................................................................................................................................201.000.00--1.00----------------------------------------------------------
........AGGAGAGCAACTCGGACG................................................................................................................................................................................................................................1811.001.00-----1.00-------------------------------------------------------
.............AGCAACTCGGACGAAGATGAG........................................................................................................................................................................................................................2111.001.00------1.00------------------------------------------------------
...............................................................................GCAGTCCCTGGGCATATAA........................................................................................................................................................191.000.001.00------------------------------------------------------------
...............................................................................GCAGTCCCTGGGCATATCC........................................................................................................................................................191.000.00-1.00-----------------------------------------------------------
...............CAACTCGGACGAAGATGAGGTC.....................................................................................................................................................................................................................2211.001.00---------1.00---------------------------------------------------
............GAGCAACTCGGACGA...............................................................................................................................................................................................................................1511.001.00------------------1.00------------------------------------------
..............................................................................TGCAGTCCCTGGGCATACAC........................................................................................................................................................201.000.00------------1.00------------------------------------------------
..................CTCGGACGAAGATGAGACG.....................................................................................................................................................................................................................191.000.00------1.00------------------------------------------------------
......GGAGGAGAGCAACTCGGACGAAGATGAGGT......................................................................................................................................................................................................................3011.001.00--------------------1.00----------------------------------------
......................................................................................CTGGGCATCGTTTCTG....................................................................................................................................................1620.500.50---------------------------------------------------------0.50---
........AGGAGAGCAACTCGG...................................................................................................................................................................................................................................1530.330.33----------------------------------------------------------0.33--

Antisense strand
GGCCGAGGAGGAGAGCAACTCGGACGAAGATGAGGTCATCCCCGACATCGGTGGGGTCCCCTCTCTGCCCTCCCCACCTGCAGTCCCTGGGCATCGTTTCTGTGTCTCGTCCCTCACCCTCTGTGGGGCACCCCGTGCTTACGAACCGTGTCTCTCTCCCTACCCCGCCCCAGGGCACACCAGCCTCCTGCTGCCCCTGTCTCACTCCTGTCCTCCTCCGTTCCGGCCTTCCTCTGCCTCACTCATCTCT
.................................................(((((((...............)))))))....(((....)))..............................................................................................................................................................
............................................45.......................................................102..................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189782SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR040028(GSM532913)
G026N. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577590(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR040010(GSM532895)
G529N. (cervix)		SRR189787SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040016(GSM532901)
G645N. (cervix)		SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR040031(GSM532916)
G013T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR191429(GSM715539)
166genomic small RNA (size selected RNA from . (breast)		SRR040012(GSM532897)
G648N. (cervix)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038853(GSM458536)
MELB. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................................................................................................................................................................CACCAGCCTCCTGCTAAAC...................................................... 191.000.00----------------------1.00--------------------------------------
......................................................GGTCCCCTCTCTGCCCTT.................................................................................................................................................................................. 181.000.00-------------------------------------1.00-----------------------
..........................................................CCCTCTCTGCCCTCCAAAC............................................................................................................................................................................. 191.000.00----------------------------------1.00--------------------------
..........................................................................................GGGTGAGGGACGAGACACAGAAACGATGC................................................................................................................................... 2911.001.00--------------1.00----------------------------------------------
..........................................................................................GACGAGACACAGAAACGATGC........................................................................................................................................... 2111.001.00--------------1.00----------------------------------------------
......................................................................................................................................................................................................GTCTCACTCCTGTCCTACG................................. 191.000.00-1.00-----------------------------------------------------------
......................................................................................................................................................................................CAGGGGCAGCAGGAGGC................................................... 1760.330.33-----------------------------------------------------------0.170.17