ID: uc002ozx.4
GENE: TOMM40(5)
chr19:45397089-45397267+


(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(8)
B-CELL 		(2)
BRAIN 		(5)
BREAST 		(18)
CELL-LINE 		(1)
FIBROBLAST 		(3)
HEART 		(2)
HELA 		(6)
LIVER 		(1)
OTHER 		(7)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
AGGTCATTCACCAGCTGGGCCCCGGTCTCAGGTCCAAGATGGCCATCCAGGTGAGTGGGGCACGGAGGCTGCTGCTCCCCTCGGCCACCGTGAGCAGGGAGCCGCCCTCACACCCCCTCCTCTCCACAGACCCAGCAGTCGAAGTTTGTGAACTGGCAGGTGGACGGGGAGTATCGGGG
..................................................(((((.((((....((((..((.((((((((((.......))))..)))))).))))))....))))....))).))....................................................
..................................................51............................................................................129................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR038861(GSM458544)
MM466. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR038855(GSM458538)
D10. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189787SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		TAX577579(Rovira)
total RNA. (breast)		SRR038863(GSM458546)
MM603. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR038862(GSM458545)
MM472. (cell line)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
...................................................TGAGTGGGGCACGGAGGCTGCT..........................................................................................................2215.005.00---1.001.001.00--1.00--------------------1.00---------------------------
...................................................TGAGTGGGGCACGGAGGCTGCTGA........................................................................................................2415.003.00-2.001.00----------1.00------------------------1.00------------------
...................................................TGAGTGGGGCACGGAGGCTGCTG.........................................................................................................2313.003.001.00---------------------1.00----------1.00-----------------------
...................................................TGAGTGGGGCACGGAGGCTGCTGT........................................................................................................2413.003.00---2.00------------------------------------1.00----------------
...................................................TGAGTGGGGCACGGAGGCTGA...........................................................................................................2113.001.001.001.00------------1.00------------------------------------------
.....................................................................................................CCGCCCTCACACCCCCTCCTC.........................................................2112.002.00---------2.00-----------------------------------------------
...................................................TGAGTGGGGCACGGAGGCTGT...........................................................................................................2112.001.00-----------1.00---1.00-----------------------------------------
.............................................................................................................................................AAGTTTGTGAACTGGCAGGGG.................212.000.00-----2.00---------------------------------------------------
.....................................................................................................CCGCCCTCACACCCCCTCCTCT........................................................2212.002.00------------2.00--------------------------------------------
........................................................GGGGCACGGAGGCTGCTGCTC......................................................................................................2112.002.00----------2.00----------------------------------------------
.......................................................TGGGGCACGGAGGCTGCTGCTGA.....................................................................................................231.000.00----1.00----------------------------------------------------
.......................................................................................................................................CAGTCGAAGTTTGTGAACTGGCAGGTTGAC..............301.000.00------------------1.00--------------------------------------
...........................................................................................................................................CGAAGTTTGTGAACTGGCAGGG..................221.000.00-------------------1.00-------------------------------------
....................................................................................................................................................TGAACTGGCAGGTGGAAA.............181.000.00--------------------------------1.00------------------------
.....................................................AGTGGGGCACGGAGGCTGCTGAA.......................................................................................................231.000.00-------1.00-------------------------------------------------
...................................................TGAGTGGGGCACGGAGGCTG............................................................................................................2011.001.00------------------------------------1.00--------------------
...................................................TGAGTGGGGCACGGAGGCTTTA..........................................................................................................2211.001.00--1.00------------------------------------------------------
...................................................TGAGTGGGGCACGGAGGCTGG...........................................................................................................2111.001.00-----------1.00---------------------------------------------
...................................................TGAGTGGGGCACGGAG................................................................................................................1611.001.00--------------1.00------------------------------------------
..............................................................CGGAGGCTGCTGCTCCCCTCGGCCATA..........................................................................................271.000.00-----------------------------------------1.00---------------
.......................................................TGGGGCACGGAGGCTGCTGAA.......................................................................................................211.000.00-1.00-------------------------------------------------------
..........................................................GGCACGGAGGCTGCTGCT.......................................................................................................1811.001.00---------------------1.00-----------------------------------
.....................................................AGTGGGGCACGGAGGCTGCTGT........................................................................................................221.000.00---------------------------------------1.00-----------------
...................................................TGAGTGGGGCACGGAGGCTGTAA.........................................................................................................2311.001.00----1.00----------------------------------------------------
...................................................TGAGTGGGGCACGGAGGCTGC...........................................................................................................2111.001.001.00--------------------------------------------------------
...................................................TGAGTGGGGCACGGAGG...............................................................................................................1711.001.001.00--------------------------------------------------------
..................................................GTGAGTGGGGCACGGAGGCTGCTG.........................................................................................................2411.001.00------1.00--------------------------------------------------
...................................................TGAGTGGGGCACGGAGGCTGCTGCAAA.....................................................................................................271.000.00----------------------------1.00----------------------------
...................................................TGAGTGGGGCACGGAGGCT.............................................................................................................1911.001.00-------1.00-------------------------------------------------
...................................................TGAGTGGGGCACGGAGGCTGAA..........................................................................................................2211.001.001.00--------------------------------------------------------
...................................................TGAGTGGGGCACGGAGGCTAA...........................................................................................................2111.001.001.00--------------------------------------------------------
.....................................................................................................................................AGCAGTCGAAGTTTGTGCTT..........................201.000.00----------------------------------1.00----------------------
.....................................................AGTGGGGCACGGAGGCTGCTGA........................................................................................................221.000.00-1.00-------------------------------------------------------
....................................................................................................................................................TGAACTGGCAGGTGGACAA............191.000.00-------------------------1.00-------------------------------
..................................................GTGAGTGGGGCACGGAGGCTGCTGCTCCCCTCG................................................................................................3311.001.00---------------------------1.00-----------------------------
...................................................TGAGTGGGGCACGGAGGCTGAAAA........................................................................................................2411.001.00--------1.00------------------------------------------------
...................................................................................................AGCCGCCCTCACACCCGT..............................................................181.000.00------1.00--------------------------------------------------
.................................................................................................................................................TTGTGAACTGGCAGGGGGA...............191.000.00-----------------1.00---------------------------------------
...................................................TGAGTGGGGCACGGAGGCATAT..........................................................................................................221.000.00-------------------------------1.00-------------------------
...................................................TGAGTGGGGCACGGAGGCTGCTAA........................................................................................................2411.005.00-------------1.00-------------------------------------------
..............................................................................CCTCGGCCACCGTGAGCAGGGAG..............................................................................2311.001.00-------------------------------------1.00-------------------
...................................................TGAGTGGGGCACGGAGGCTGCTGCA.......................................................................................................251.000.00--1.00------------------------------------------------------
...................................................TGAGTGGGGCACGGAGAAG.............................................................................................................1911.001.001.00--------------------------------------------------------
........................................................................................CGTGAGCAGGGAGCCGCCCTCAC....................................................................2311.001.00--------------------1.00------------------------------------
.................................................................................................................................ACCCAGCAGTCGAAGGC.................................171.000.00------------------------------------------1.00--------------
..............................................................................................................................................AGTTTGTGAACTGGCAGGGG.................201.000.00----------------1.00----------------------------------------
...................................................TGAGTGGGGCACGGAGGCTGCTGCTAT.....................................................................................................2711.001.00-----------------------------------1.00---------------------
..............................................................CGGAGGCTGCTGCTCCCCTCGGCCACC..........................................................................................2711.001.00-----------------------1.00---------------------------------
...................................................TGAGTGGGGCACGGAGA...............................................................................................................1711.001.00-1.00-------------------------------------------------------
...................................................TGAGTGGGGCACGGAGGCTGCTGCT.......................................................................................................2511.001.00------------------------------1.00--------------------------
.....................................................................................................CCGCCCTCACACCCCC..............................................................1620.500.50---------------0.50-----------------------------------------
....................................................................................................................................CAGCAGTCGAAGTTTGTGAACT.........................2250.400.40-------------------0.20-------------------------0.20-----------
.....................................................................................................................................AGCAGTCGAAGTTTGTGAAC..........................2050.400.40---------------------------------------------0.20--------0.20--
..........................................................................................................................................TCGAAGTTTGTGAACTGGC......................1950.400.40--------------------------------------------0.20-----------0.20
........................................................................................................................................................CTGGCAGGTGGACGGGGAGTAT.....2250.400.40----------------0.40----------------------------------------
.....ATTCACCAGCTGGGCCCCG...........................................................................................................................................................1940.250.25-----------------0.25---------------------------------------
......................CGGTCTCAGGTCCAAGA............................................................................................................................................1740.250.25-------------------------------------------0.25-------------
..................................................................................................................................................TGTGAACTGGCAGGTGGACGGGGAG........2550.200.20----------------0.20----------------------------------------
....................................................................................................................................CAGCAGTCGAAGTTTGTGAACTGGC......................2550.200.20-------------------------------------------------0.20-------
.......................................................................................................................................................ACTGGCAGGTGGACGGGGA.........1950.200.20--0.20------------------------------------------------------
.........................................................................................................................................GTCGAAGTTTGTGAACTGGCAG....................2250.200.20--------------------------------------------------0.20------
....................................................................................................................................CAGCAGTCGAAGTTTGTGAACTGGCAGGTG.................3050.200.20---------------------------------------------------0.20-----
...............................................................................................................................AGACCCAGCAGTCGAAGTTTGTGAA...........................2550.200.20-------------------------------------------0.20-------------
..........................................................................................................................................TCGAAGTTTGTGAACTGGCAGGTGGAC..............2750.200.20--------------------------------------------0.20------------
........................................................................................................................................................CTGGCAGGTGGACGGGGAGTATCGGG.2650.200.20----------------------------------------------------0.20----
.....................................................................................................................................AGCAGTCGAAGTTTGTGAACTGGCAGGTGGACG.............3350.200.20------------------0.20--------------------------------------
..................................................................................................................................CCCAGCAGTCGAAGTTTGTGAACTGGCAGG...................3050.200.20-----------------------------------------------------0.20---
.........................................................................................................................................GTCGAAGTTTGTGAACTGGCAGGTGGACGGG...........3150.200.20-------------------------------------------------------0.20-

Antisense strand
AGGTCATTCACCAGCTGGGCCCCGGTCTCAGGTCCAAGATGGCCATCCAGGTGAGTGGGGCACGGAGGCTGCTGCTCCCCTCGGCCACCGTGAGCAGGGAGCCGCCCTCACACCCCCTCCTCTCCACAGACCCAGCAGTCGAAGTTTGTGAACTGGCAGGTGGACGGGGAGTATCGGGG
..................................................(((((.((((....((((..((.((((((((((.......))))..)))))).))))))....))))....))).))....................................................
..................................................51............................................................................129................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR038861(GSM458544)
MM466. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR038855(GSM458538)
D10. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189787SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		TAX577579(Rovira)
total RNA. (breast)		SRR038863(GSM458546)
MM603. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR038862(GSM458545)
MM472. (cell line)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
..............................................................................................................................................AGTTTGTGAACTGGCAGGTGGACGGGGAGTATCC... 341.000.00------------------------1.00--------------------------------
...............................................................................CTCACGGTGGCCGAG..................................................................................... 1531.001.00---------------0.33------------------------------0.330.33---------
.......................................................................................................GCCCTCACACCCCCTCCTCTTC...................................................... 221.000.00--------------------------1.00------------------------------
...............................................................................CTCGGCCACCGTGAGTGC.................................................................................. 180.330.00------------------------------------------------0.33--------
.................................................................................................................CTGTGGAGAGGAGGGG.................................................. 1680.120.12--------------------0.12------------------------------------