ID: uc002oxj.3
GENE: SMG9(10)
chr19:44237836-44238085-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(5)
B-CELL 		(4)
BRAIN 		(8)
BREAST 		(29)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(3)
HEART 		(3)
HELA 		(1)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(7)
SKIN 		(1)
XRN.ip

Sense strand
GGCAGAAATCAGACCTGACTCACTTCTGGGTCCCCAGCATTGCCCTACACAGAGCCTGGTGCTAAAGTGAAGTGAAGTTATATAAATATTTACACAGTGATCTGAACTCAGGGGTAACAACAGGTCTTTGGGGTGAGAAAGGGGAGTCCATGAAGCCAAGCGATGTCTGCCTGACAGGGCCCGTCTCTTCCCACCCTCAGTCTTCTTGCAGAACAAAGCTCGCCGAGAGGACTTCTGTCCTCGGAAGCTG
................................................................................................................................(((((((.((((((((.((((.....((...))..((((.....)))))))))).))).))).))))).))...................................................
.........................................................................................................................122...........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR038863(GSM458546)
MM603. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR189784DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR038857(GSM458540)
D20. (cell line)		SRR189787SRR029125(GSM416754)
U2OS. (cell line)		SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040008(GSM532893)
G727N. (cervix)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR029126(GSM416755)
143B. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038862(GSM458545)
MM472. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189785SRR038860(GSM458543)
MM426. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR029131(GSM416760)
MCF7. (cell line)		SRR191572(GSM715682)
66genomic small RNA (size selected RNA from t. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		TAX577741(Rovira)
total RNA. (breast)
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGT.......................................................................................................21134.0034.0021.005.00-----1.00--1.00-1.00---1.00-1.001.00--------1.00-----------1.00----------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCT.....................................................................................................22121.0012.0018.00---------------------1.00------1.00-------------1.00-------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTCT.....................................................................................................23114.009.009.00--1.001.001.001.00-------------------------------------------1.00------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTC......................................................................................................21112.0012.00-7.00--2.002.00-----------1.00---------------------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTC......................................................................................................2219.009.001.00----1.00----1.00--1.00-2.00----1.00--------------------------1.00-----1.00---------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTCA.....................................................................................................2318.009.005.00--1.00------1.00---------------------1.00------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAG........................................................................................................2028.008.003.00-----0.501.00-----------------------------------------------0.50----0.500.50-0.50-0.500.500.50-
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCA.....................................................................................................2218.0012.003.00--2.00---------1.00--1.00--------1.00-------------------------------------------
.............................................................................................................................CTTTGGGGTGAGAAAGGGGAGTCCATGAAGCCAAGCGATGTCTGCCTGACAGGGCCCGTCTCTTCCCACCCTCAG..................................................7517.007.00--7.00------------------------------------------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAG........................................................................................................1926.006.004.00----------0.50------------------1.00----------------------------0.50---------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCAA....................................................................................................2316.0012.006.00--------------------------------------------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGT.......................................................................................................2015.005.003.00-----------------1.00----1.00---------------------------------------------
................................................................................................................................TGGGGTGAGAAAGGGGAGTCCAT...................................................................................................2315.005.005.00--------------------------------------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTCAT....................................................................................................2415.009.00---2.00----------------------------------1.00---1.00-----------1.00--------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCAT....................................................................................................2313.0012.00--------------2.00-----------------------------1.00------------------------
.......................................................................................................................ACAGGTCTTTGGGGTGAGAAAGGG...........................................................................................................2412.002.00--------2.00------------------------------------------------------------
..............................................................................................................................................................................CAGGGCCCGTCTCTTCCCACCC......................................................2212.002.002.00--------------------------------------------------------------------
...................................................................................................................................................................................CCCGTCTCTTCCCACCCTCAGT.................................................2212.002.00---------------------1.00--------------1.00--------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCTTT...................................................................................................2412.0012.00------1.00------------------------------------------1.00-------------------
................................................................................................................................TGGGGTGAGAAAGGGGAGTCCATGT.................................................................................................252.000.002.00--------------------------------------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGA.........................................................................................................1921.501.50--------------------0.50-----------------------------------0.500.50-----------
...............................................................................................................................TTGGGGTGAGAAAGGGGA.........................................................................................................1821.001.00--------1.00------------------------------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTCTCT...................................................................................................2511.009.00-----------1.00---------------------------------------------------------
..............................................................................TATATAAATATTTACGTAA.........................................................................................................................................................191.000.00------1.00--------------------------------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTAA.....................................................................................................2311.0034.00-------1.00-------------------------------------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTAG.....................................................................................................2211.005.00---------------------------------------------------1.00-----------------
.....................................................................................................CTGAACTCAGGGGTAACAACA................................................................................................................................2111.001.00--------------------------1.00------------------------------------------
................................................................................................................................TGGGGTGAGAAAGGGGAGT.......................................................................................................1911.001.00-----------------------------------1.00---------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCAAG...................................................................................................2411.0012.00------------------------1.00--------------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTCAA....................................................................................................2411.009.00----------------------------------------------1.00----------------------
...................................................................................................................................................................................CCCGTCTCTTCCCACCCTCAG..................................................2111.001.00-----------------------------------------1.00---------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAAA.......................................................................................................2021.001.001.00--------------------------------------------------------------------
.........CAGACCTGACTCACTGGC...............................................................................................................................................................................................................................181.000.00---------------------------1.00-----------------------------------------
..................................................................................................GATCTGAACTCAGGGTACG.....................................................................................................................................191.000.00----------------------------------------------------1.00----------------
...................................................................................................................................................................................CCCGTCTCTTCCCACCCTCAGC.................................................2211.001.00-----------1.00---------------------------------------------------------
......................................................................................................................................................................CTGCCTGACAGGGCCCGTCTCTTCCC..........................................................2611.001.00-------------------------------------1.00-------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTCAAC...................................................................................................2511.009.00----1.00----------------------------------------------------------------
........TCAGACCTGACTCACTATA...............................................................................................................................................................................................................................191.000.00---------------------------------------1.00-----------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTCAACC..................................................................................................2611.009.00---------1.00-----------------------------------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCCTC...................................................................................................241.000.00---------1.00-----------------------------------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCAAAA..................................................................................................2511.0012.00------------1.00--------------------------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTCATA...................................................................................................2511.009.00----1.00----------------------------------------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCTT....................................................................................................2311.0012.00------------------------------------------------1.00--------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGTCTAA...................................................................................................2511.009.00---------------------------------------------1.00-----------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGTCCATA..................................................................................................251.000.00-----------------1.00---------------------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGAAT........................................................................................................2020.500.50----------------------------------------------------------------0.50----
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGCC......................................................................................................2220.508.00-------------------0.50-------------------------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGGAGACT.....................................................................................................2220.506.000.50--------------------------------------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGG...........................................................................................................1720.500.50----------------------------------------------------------0.50----------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGACC.....................................................................................................2320.508.00---------0.50-----------------------------------------------------------
..............................................................................................................................TTTGGGGTGAGAAAGGGGAGC.......................................................................................................2120.508.00---------0.50-----------------------------------------------------------
...............................................................................................................................TTGGGGTGAGAAAGGGG..........................................................................................................1740.250.25--------------------------------------------------------------------0.25
...............................................................................................................................TTGGGGTGAGAAAGGG...........................................................................................................1660.170.17------------0.17--------------------------------------------------------

Antisense strand
GGCAGAAATCAGACCTGACTCACTTCTGGGTCCCCAGCATTGCCCTACACAGAGCCTGGTGCTAAAGTGAAGTGAAGTTATATAAATATTTACACAGTGATCTGAACTCAGGGGTAACAACAGGTCTTTGGGGTGAGAAAGGGGAGTCCATGAAGCCAAGCGATGTCTGCCTGACAGGGCCCGTCTCTTCCCACCCTCAGTCTTCTTGCAGAACAAAGCTCGCCGAGAGGACTTCTGTCCTCGGAAGCTG
................................................................................................................................(((((((.((((((((.((((.....((...))..((((.....)))))))))).))).))).))))).))...................................................
.........................................................................................................................122...........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR038863(GSM458546)
MM603. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR189784DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR038857(GSM458540)
D20. (cell line)		SRR189787SRR029125(GSM416754)
U2OS. (cell line)		SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040008(GSM532893)
G727N. (cervix)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR029126(GSM416755)
143B. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038862(GSM458545)
MM472. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189785SRR038860(GSM458543)
MM426. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR029131(GSM416760)
MCF7. (cell line)		SRR191572(GSM715682)
66genomic small RNA (size selected RNA from t. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		TAX577741(Rovira)
total RNA. (breast)
...........................GGGTCCCCAGCATTGCCGTGG.......................................................................................................................................................................................................... 211.000.00----------------------------------1.00----------------------------------
.................................................................................................................................................................................GTGGGAAGAGACGGGCC........................................................ 1711.001.00-------------------------------1.00-------------------------------------
................................................................................................GTGATCTGAACTCAGGCCA....................................................................................................................................... 191.000.00---------------------------------1.00-----------------------------------
...........................CTGTGTAGGGCAATGCTGGGGACCC...................................................................................................................................................................................................... 2520.500.50--------------------------------------------------------------0.50------