ID: uc002owy.2_intron_0_0_chr19_44100738_f.5p
GENE: ZNF576(1)
chr19:44100688-44100937+


(2)
AGO2.ip 		(11)
B-CELL 		(3)
BRAIN 		(15)
BREAST 		(27)
CELL-LINE 		(3)
CERVIX 		(1)
FIBROBLAST 		(3)
HEART 		(4)
HELA 		(6)
LIVER 		(3)
OTHER 		(21)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
CGGCGCTGTAGCCAGCGGCTGACAGGCGCAGCGAAAGGCAGCCCTCTGCTGTAAGGAGGAAAACTGAGGCCTGGGAGCAGGAACCTGTAGGCAGCGCTTGAGGGTAGCGGGATAGCAGCTGCAAGCGCGCGTGGGAGGCGGGGGCTCTGGGCGGAACAAAAATCACAGGATGTCAGAGGATGTTTCCCGGGAAGAACTGGGATAAAGGGTGGGTATCACTACCTGCCCCAAGACACTTGAGATTGGGATG
.....................................................................((((....))))..((....))..(((((((..(((.((......)).))).)))))))..........................................................................................................................
.....................................................................70.........................................................129.......................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		TAX577744(Rovira)
total RNA. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		TAX577746(Rovira)
total RNA. (breast)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR038860(GSM458543)
MM426. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR040029(GSM532914)
G026T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR191457(GSM715567)
27genomic small RNA (size selected RNA from t. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR038859(GSM458542)
MM386. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR038853(GSM458536)
MELB. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR029125(GSM416754)
U2OS. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
..........................................................................GAGCAGGAACCTGTAGGCAG............................................................................................................................................................2019.009.003.00---5.00--------------------------------------1.00---------------------------------------------------------
................................................................................GAACCTGTAGGCAGCGCATC......................................................................................................................................................209.000.00--9.00--------------------------------------------------------------------------------------------------
..............................................................................AGGAACCTGTAGGCAGCGCTTT......................................................................................................................................................2215.001.00-------4.00---------------------------1.00-----------------------------------------------------------------
.............................................................................CAGGAACCTGTAGGCAGC...........................................................................................................................................................1814.004.00-1.00---2.00-------------------------------------------1.00---------------------------------------------------
............................................................................GCAGGAACCTGTAGGCAGCG..........................................................................................................................................................2014.004.001.00------------------------------2.00-----------------------1.00---------------------------------------------
.......................................................................TGGGAGCAGGAACCTGTAGG...............................................................................................................................................................2013.003.002.00--------------------------------------------------------------------------1.00-------------------------
..............................................................................AGGAACCTGTAGGCAGCGCT........................................................................................................................................................2013.003.001.00---------------------------------------------------------1.00--------------------1.00---------------------
............................................................................GCAGGAACCTGTAGGCAG............................................................................................................................................................1813.003.001.00-------------------1.00------------------------------------------1.00-------------------------------------
.................................................................................AACCTGTAGGCAGCGC.........................................................................................................................................................1613.003.00-----1.002.00----------------------------------------------------------------------------------------------
...........................................................................................................CGGGATAGCAGCTGCAAG.............................................................................................................................1813.003.00---3.00-------------------------------------------------------------------------------------------------
.............................................................................................GCGCTTGAGGGTAGCGGGATAGC......................................................................................................................................2313.003.00-----------3.00-----------------------------------------------------------------------------------------
................................................................................................CTTGAGGGTAGCGGGATAGC......................................................................................................................................2013.003.00----------1.00--------------2.00---------------------------------------------------------------------------
.............................................................................CAGGAACCTGTAGGCAGCGCT........................................................................................................................................................2113.003.00-2.00----------------------------------------------------------------1.00----------------------------------
.........................................................................................................................................................GAACAAAAATCACAGGATGTCAGAGGATGTTTCCCGGGAAGAACTGGGATAAAGG..........................................5513.003.00-------------3.00---------------------------------------------------------------------------------------
...........................................................................................................................................................ACAAAAATCACAGGATGTCAGAGG.......................................................................2413.003.00-3.00---------------------------------------------------------------------------------------------------
..............................................................ACTGAGGCCTGGGAGCAGGAACC.....................................................................................................................................................................2312.002.002.00----------------------------------------------------------------------------------------------------
.................................................................................AACCTGTAGGCAGCGCTTGA.....................................................................................................................................................2012.002.00-----------------------2.00-----------------------------------------------------------------------------
..............................................................................AGGAACCTGTAGGCAGCGC.........................................................................................................................................................1912.002.00-1.00---------------------------------------------------------1.00-----------------------------------------
...........................................................................AGCAGGAACCTGTAGGCAGCG..........................................................................................................................................................2112.002.00------------------------1.00-----1.00----------------------------------------------------------------------
.....................................................................CCTGGGAGCAGGAACCTGTAGGCAGC...........................................................................................................................................................2612.002.00---------------------------------2.00-------------------------------------------------------------------
................................................................................................................................................................AATCACAGGATGTCAGAGGA......................................................................2012.002.002.00----------------------------------------------------------------------------------------------------
..............................................................................AGGAACCTGTAGGCAGC...........................................................................................................................................................1712.002.00------------------------------------------1.00--------------------------------------------1.00-------------
...........................................................................AGCAGGAACCTGTAGGCAG............................................................................................................................................................1912.002.00---2.00-------------------------------------------------------------------------------------------------
..............................................................................AGGAACCTGTAGGCAGCG..........................................................................................................................................................1812.002.00---------------1.00---------------------1.00---------------------------------------------------------------
.................................................................GAGGCCTGGGAGCAGGAA.......................................................................................................................................................................1812.002.00----------------------------------------------------1.00----------------------------1.00-------------------
..........................................................................GAGCAGGAACCTGTAGGCA.............................................................................................................................................................1912.002.00---------------------1.00-----------------------1.00-------------------------------------------------------
............................................................................GCAGGAACCTGTAGGCAGCGCTTGAGGGT.................................................................................................................................................2912.002.00---------1.00-------1.00-----------------------------------------------------------------------------------
.................................................................................AACCTGTAGGCAGCG..........................................................................................................................................................1512.002.00------2.00----------------------------------------------------------------------------------------------
..................................................................................ACCTGTAGGCAGCGCTTGA.....................................................................................................................................................1912.002.00---------------1.00--1.00----------------------------------------------------------------------------------
.......................................................................TGGGAGCAGGAACCTGTAG................................................................................................................................................................1912.002.00-----------------1.00--------------------------------------------1.00--------------------------------------
..................................................................................ACCTGTAGGCAGCGCTTGAG....................................................................................................................................................2012.002.00-2.00---------------------------------------------------------------------------------------------------
.................................................................................................................................................................ATCACAGGATGTCAGAGG.......................................................................1832.002.00---2.00-------------------------------------------------------------------------------------------------
......................................................................CTGGGAGCAGGAACCTGTAGGC..............................................................................................................................................................2212.002.00-----1.00---------------------------------------------------------------1.00-------------------------------
............................................................................................................................GCGCGCGTGGGAGGCGGGGGT.........................................................................................................211.000.00-----------------------------------------------------------------------------------------------1.00-----
................................................................................................CTTGAGGGTAGCGGGATA........................................................................................................................................1811.001.00-----------------------------------------------------------------------------------1.00-----------------
.................................................................................................TTGAGGGTAGCGGGATAG.......................................................................................................................................1811.001.00----------------------------------------------------------------------------------1.00------------------
..............................................................................................................................GCGCGTGGGAGGCGGGGG..........................................................................................................1811.001.00-------------------------------------------------------------------------1.00---------------------------
............................................................................GCAGGAACCTGTAGGCAGCGCTTTTGG...................................................................................................................................................2711.001.00----------------------------------------------------------------------------------------1.00------------
............................................................................................AGCGCTTGAGGGTAGCGG............................................................................................................................................1811.001.00-------------------1.00---------------------------------------------------------------------------------
................................................................................GAACCTGTAGGCAGCGCTTGAGGGTAGC..............................................................................................................................................2811.001.00-------------------------------------------------------------1.00---------------------------------------
............................................................................................AGCGCTTGAGGGTAGCGGGA..........................................................................................................................................2011.001.00--------------------------------1.00--------------------------------------------------------------------
............................................................................GCAGGAACCTGTAGGCAGCGCTT.......................................................................................................................................................2311.001.00--------------1.00--------------------------------------------------------------------------------------
................................................................................GAACCTGTAGGCAGCGCTTGAG....................................................................................................................................................2211.001.00----------------------------------------------1.00------------------------------------------------------
.......................................................................................................................................AGGCGGGGGCTCTGGAGGT................................................................................................191.000.00----------------1.00------------------------------------------------------------------------------------
.............................................................................................................................................................................CAGAGGATGTTTCCCGGGAAGAACTGGG.................................................2811.001.00-----------------------------1.00-----------------------------------------------------------------------
...........................................................................................................................AGCGCGCGTGGGAGGCGGGGGCTCTGGGTCG................................................................................................311.000.00------------1.00----------------------------------------------------------------------------------------
....................................................................................................................................GGGAGGCGGGGGCTCTGGGC..................................................................................................2011.001.001.00----------------------------------------------------------------------------------------------------
...............................................................................................................................................GCTCTGGGCGGAACAAAAAT.......................................................................................2011.001.00-----------------------------------------------------------------1.00-----------------------------------
..................................................................................ACCTGTAGGCAGCGCTTGAGG...................................................................................................................................................2111.001.00-----------------------------------------------------------------------1.00-----------------------------
...........................................................................................CAGCGCTTGAGGGTAGCGGG...........................................................................................................................................2011.001.00--------------------------1.00--------------------------------------------------------------------------
............................................................................GCAGGAACCTGTAGGCAGCGC.........................................................................................................................................................2111.001.001.00----------------------------------------------------------------------------------------------------
......................................................................................................................................................GCGGAACAAAAATCACAGGATGTCAGG.........................................................................271.000.00--------1.00--------------------------------------------------------------------------------------------
...................................................................................................GAGGGTAGCGGGATAGCAG....................................................................................................................................1911.001.00-1.00---------------------------------------------------------------------------------------------------
....................................................................................CTGTAGGCAGCGCTTGAGGG..................................................................................................................................................2011.001.00----------------------------------------------------------------------1.00------------------------------
......................................................................CTGGGAGCAGGAACCTGTAGGCAG............................................................................................................................................................2411.001.001.00----------------------------------------------------------------------------------------------------
..............................................................................AGGAACCTGTAGGCAGCGCTTTAT....................................................................................................................................................2411.001.00-------------------1.00---------------------------------------------------------------------------------
...................................................................................................................................................................CACAGGATGTCAGAGGAT.....................................................................1811.001.00------------------------------------------------1.00----------------------------------------------------
.............................................................................CAGGAACCTGTAGGCAGCGC.........................................................................................................................................................2011.001.00----------------------------------------1.00------------------------------------------------------------
................................................CTGTAAGGAGGAAAACTG........................................................................................................................................................................................1811.001.00--------------------1.00--------------------------------------------------------------------------------
.....................................................................CCTGGGAGCAGGAACCTGTAGGCA.............................................................................................................................................................2411.001.00------------------------------------------------------------1.00----------------------------------------
.....................................................................................TGTAGGCAGCGCTTGAGGGTAGC..............................................................................................................................................2311.001.00-----------------------------------------------------------------------------1.00-----------------------
............................................................................GCAGGAACCTGTAGGCAGC...........................................................................................................................................................1911.001.00------------------------------------1.00----------------------------------------------------------------
..............................................................................AGGAACCTGTAGGCAGCGCTTGA.....................................................................................................................................................2311.001.00--------------------------------1.00--------------------------------------------------------------------
..............................................................................AGGAACCTGTAGGCAGCGCTTGAGGGTAGCGG............................................................................................................................................3211.001.00------------------------------------------------------1.00----------------------------------------------
.............................................................................CAGGAACCTGTAGGCAGCG..........................................................................................................................................................1911.001.00------------------------------1.00----------------------------------------------------------------------
..........................................................................................................................................................AACAAAAATCACAGGATGTCAGAGG.......................................................................2511.001.00--------1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................TGGGCGGAACAAAAATCACAGGATGTC............................................................................2711.001.00--------1.00--------------------------------------------------------------------------------------------
.....................................................................................................................................................................CAGGATGTCAGAGGATGTT..................................................................1911.001.00------------------------------------------------------------------------------1.00----------------------
..................................................................................................TGAGGGTAGCGGGATAGCAGCTGC................................................................................................................................2411.001.00--------1.00--------------------------------------------------------------------------------------------
.............................................................................CAGGAACCTGTAGGCAGCGCTTGA.....................................................................................................................................................2411.001.00-----------------------------------------1.00-----------------------------------------------------------
........................................................................................................................................GGCGGGGGCTCTGGGCGGGG..............................................................................................201.000.00---------------------------1.00-------------------------------------------------------------------------
...............................................................................................................ATAGCAGCTGCAAGCGCG.........................................................................................................................1811.001.00----------------------------1.00------------------------------------------------------------------------
....................................................................................................AGGGTAGCGGGATAGCAG....................................................................................................................................1811.001.00--------------------------------------------------------1.00--------------------------------------------
..............................................................................AGGAACCTGTAGGCAGCGCTTGAGG...................................................................................................................................................2511.001.00-----------------------------------------------------1.00-----------------------------------------------
...............................................................................................................................CGCGTGGGAGGCGGGGGCTCTGGGCGGAA..............................................................................................2911.001.00---------1.00-------------------------------------------------------------------------------------------
..................................................................................ACCTGTAGGCAGCGCTTGAGGGT.................................................................................................................................................2311.001.00---------------------------------------------------------------------------------------------1.00-------
...........................................................................................................CGGGATAGCAGCTGCAAGCCC..........................................................................................................................211.000.00--------------------------------------------------1.00--------------------------------------------------
..................................................................................................................................................................TCACAGGATGTCAGAGGA......................................................................1811.001.00---1.00-------------------------------------------------------------------------------------------------
........................................................................................................................................GGCGGGGGCTCTGGGCGCGTG.............................................................................................211.000.00----------------1.00------------------------------------------------------------------------------------
..................................................................................ACCTGTAGGCAGCGCTTGAGTG..................................................................................................................................................2211.002.00---------------------------------------------------------1.00-------------------------------------------
..............................................................................AGGAACCTGTAGGCAGCGCTT.......................................................................................................................................................2111.001.00----1.00------------------------------------------------------------------------------------------------
.................................................................GAGGCCTGGGAGCAGGAACC.....................................................................................................................................................................2011.001.00----------1.00------------------------------------------------------------------------------------------
...........................................................................................................CGGGATAGCAGCTGCAAGCG...........................................................................................................................2011.001.00-----------------------------1.00-----------------------------------------------------------------------
...........................................................................................................................................................ACAAAAATCACAGGATGTCAGA.........................................................................2211.001.00-1.00---------------------------------------------------------------------------------------------------
....................................................................GCCTGGGAGCAGGAACCTG...................................................................................................................................................................1911.001.00------------------------------------------------------------------------------------------1.00----------
.................................................................................................................AGCAGCTGCAAGCGCGCG.......................................................................................................................1811.001.00------------1.00----------------------------------------------------------------------------------------
...........................................................................................................CGGGATAGCAGCTGCAAGCGCG.........................................................................................................................2211.001.00----------------------------------------------------------------------------------------------1.00------
........................................................................GGGAGCAGGAACCTGTAGGCAG............................................................................................................................................................2211.001.00----------------------1.00------------------------------------------------------------------------------
................................................................................GAACCTGTAGGCAGCGCTTGAGGGTAGCGGGATAG.......................................................................................................................................3511.001.00--------------1.00--------------------------------------------------------------------------------------
...............................................................................................GCTTGAGGGTAGCGGGATAGCAGCTG.................................................................................................................................2611.001.00----------------------------1.00------------------------------------------------------------------------
.........................................................................................................................................GCGGGGGCTCTGGGCGCGAG.............................................................................................201.000.00------------------------1.00----------------------------------------------------------------------------
............................................................................................................................................................................................GGGAAGAACTGGGATAAAG...........................................1911.001.00----------------------------------1.00------------------------------------------------------------------
.................................................................................................................................CGTGGGAGGCGGGGGTTGC......................................................................................................191.000.00------------------------------------------------------------------------1.00----------------------------
............................CAGCGAAAGGCAGCCCTCTGC.........................................................................................................................................................................................................2111.001.00--------------------------------------------------------------------------1.00--------------------------
........................................................AGGAAAACTGAGGCCTGGGAGCAGGAACCT....................................................................................................................................................................3011.001.00--------------------------1.00--------------------------------------------------------------------------
..................................................................................................................................................................................................AACTGGGATAAAGGGGGAG.....................................191.000.00---------------------------------------------------1.00-------------------------------------------------
.......................................................................TGGGAGCAGGAACCTGTA.................................................................................................................................................................1811.001.00------------------1.00----------------------------------------------------------------------------------
.................................................................GAGGCCTGGGAGCAGGAAC......................................................................................................................................................................1911.001.00---------------------1.00-------------------------------------------------------------------------------
.........................................................................GGAGCAGGAACCTGTAGGCAGC...........................................................................................................................................................2211.001.00--------------------------------------------------------------------------------------1.00--------------
..........................................................................GAGCAGGAACCTGTAGGCAGCGCTTG......................................................................................................................................................2611.001.00------------------------------------------------------------------------------------------------1.00----
....................................................................................................................................GGGAGGCGGGGGCTCTGGGCGGA...............................................................................................2311.001.00------------1.00----------------------------------------------------------------------------------------
...............................................................................GGAACCTGTAGGCAGC...........................................................................................................................................................1611.001.00------------------------------------------------------------------------------------1.00----------------
....................................................................................................................................................................................................CTGGGATAAAGGGTGGGTATCA................................2211.001.00---------1.00-------------------------------------------------------------------------------------------
....................................................AAGGAGGAAAACTGAGGCCT..................................................................................................................................................................................2011.001.00--------------------------------------------------------------------------------------------1.00--------
.........................................................................................................................................................GAACAAAAATCACAGGATGTCAG..........................................................................2311.001.00-----1.00-----------------------------------------------------------------------------------------------
..............................................................................AGGAACCTGTAGGCAGCGCTTAA.....................................................................................................................................................2311.001.00--------------------------------------------------------------------------------1.00--------------------
..........................................................................GAGCAGGAACCTGTAGGCAGC...........................................................................................................................................................2111.001.00-------------------------------------------------------------------------------------1.00---------------
.............................................................................................................................................................................................GGAAGAACTGGGATAAAGGGT........................................2111.001.00--------------------------------------------1.00--------------------------------------------------------
....................................................................................CTGTAGGCAGCGCTTGAGGGT.................................................................................................................................................2111.001.00----------------------------------------------------------------------------1.00------------------------
.....................................................................CCTGGGAGCAGGAACCTGTA.................................................................................................................................................................2011.001.00-------------------------------------------------------------------------------------------1.00---------
..................................................................................ACCTGTAGGCAGCGCTTGAGGGTAG...............................................................................................................................................2511.001.00-------------------------------------------------------------------1.00---------------------------------
..................................................................................................TGAGGGTAGCGGGATCGC......................................................................................................................................181.000.00----------------------------------1.00------------------------------------------------------------------
.....................................................AGGAGGAAAACTGAGGCCTGGGAGCAGGAACCT....................................................................................................................................................................3311.001.00----------1.00------------------------------------------------------------------------------------------
..............................................................................................................................GCGCGTGGGAGGCGGGGGCTCT......................................................................................................2211.001.00-1.00---------------------------------------------------------------------------------------------------
......................................................................CTGGGAGCAGGAACCTG...................................................................................................................................................................1721.001.00------0.50--------------------------------------------------------------------------------------------0.50-
.GGCGCTGTAGCCAGCGGC.......................................................................................................................................................................................................................................1811.001.00-----1.00-----------------------------------------------------------------------------------------------
..................................................................................ACCTGTAGGCAGCGCTTG......................................................................................................................................................1811.001.00----------------------1.00------------------------------------------------------------------------------
..............................................................................................................................................................AAAATCACAGGATGTCAGAGGATGTT..................................................................2611.001.00-----------------------------------------------------------------------------------------1.00-----------
...........................................................AAAACTGAGGCCTGGGAG.............................................................................................................................................................................1830.670.670.67----------------------------------------------------------------------------------------------------
..........................................................................GAGCAGGAACCTGTAGG...............................................................................................................................................................1720.500.50--------------------------------------------------------------------------------------------------0.50--
...........................................................................................................................AGCGCGCGTGGGAGG................................................................................................................1520.500.50-------------------------------------------------------------------------------------------------0.50---
.....................................................................CCTGGGAGCAGGAACCTG...................................................................................................................................................................1820.500.50-----------------------------------0.50-----------------------------------------------------------------
................................................................................................................................................................AATCACAGGATGTCAGAGG.......................................................................1930.330.33---0.33-------------------------------------------------------------------------------------------------
...........................................................................AGCAGGAACCTGTAGG...............................................................................................................................................................1630.330.33------------------------------------0.33----------------------------------------------------------------
................................................................................................................................................................................................AGAACTGGGATAAAGG..........................................1640.250.25---------------0.25-------------------------------------------------------------------------------------
....................................................AAGGAGGAAAACTGAGGC....................................................................................................................................................................................1850.200.20---------------0.20-------------------------------------------------------------------------------------
...........................................................................................................................................GGGGGCTCTGGGCGGA...............................................................................................1650.200.20----------------------------------------------------------------------------------------------------0.20
..............................................................................AGGAACCTGTAGGCA.............................................................................................................................................................1580.120.12---------------0.12-------------------------------------------------------------------------------------

Antisense strand
CGGCGCTGTAGCCAGCGGCTGACAGGCGCAGCGAAAGGCAGCCCTCTGCTGTAAGGAGGAAAACTGAGGCCTGGGAGCAGGAACCTGTAGGCAGCGCTTGAGGGTAGCGGGATAGCAGCTGCAAGCGCGCGTGGGAGGCGGGGGCTCTGGGCGGAACAAAAATCACAGGATGTCAGAGGATGTTTCCCGGGAAGAACTGGGATAAAGGGTGGGTATCACTACCTGCCCCAAGACACTTGAGATTGGGATG
.....................................................................((((....))))..((....))..(((((((..(((.((......)).))).)))))))..........................................................................................................................
.....................................................................70.........................................................129.......................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		TAX577744(Rovira)
total RNA. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		TAX577746(Rovira)
total RNA. (breast)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR038860(GSM458543)
MM426. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR040029(GSM532914)
G026T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR191457(GSM715567)
27genomic small RNA (size selected RNA from t. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR038859(GSM458542)
MM386. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR038853(GSM458536)
MELB. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR029125(GSM416754)
U2OS. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
..................................................................................................................................................................................................AACTGGGATAAAGGGGTT...................................... 181.000.00----------------------------------------------------------------1.00------------------------------------
.....................................GCAGCCCTCTGCTGTAA.................................................................................................................................................................................................... 171.000.00---------------------------1.00-------------------------------------------------------------------------
........................................................................................................................................................................................................................CACTACCTGCCCCAAGGACT.............. 201.000.00-----------------------------------------------1.00-----------------------------------------------------
...................................................................................CCTGTAGGCAGCGCTTCG..................................................................................................................................................... 181.000.00--------------------------------------------------------------------1.00--------------------------------
...............................................................................................................................................................................................CCCTTTATCCCAGTTCTT......................................... 1811.001.00---------------------------------------1.00-------------------------------------------------------------
..............................................TGCTGTAAGGAGGAAACATG........................................................................................................................................................................................ 201.000.00--------------------------------------1.00--------------------------------------------------------------