ID: uc002otf.1_intron_18_0_chr19_42798888_f
GENE: CIC(19)
chr19:42798838-42799025+


(3)
B-CELL 		(5)
BRAIN 		(6)
BREAST 		(12)
CELL-LINE 		(2)
CERVIX 		(3)
HEART 		(1)
HELA 		(1)
KIDNEY 		(4)
LIVER 		(2)
OTHER 		(12)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CCGGGCCCTGGTCATGCAGCTCTTTCAGGACCATGGCTTCTTCCCGTCAGGTGAGCCTGTCTCGGAGTCTTGGGGTCACTCGGGTGGGACTTATCTGTACATCTCATCCTGTGCTCCCCACCGTTTTTCTATCTCCAGCCCAGGCCACAGCCGCCTTCCAGGCCCGCTATGCAGACATCTTTCCCTCC
..............................................................(((.....(((((.(((..((((((((..((....))..)))))))).)))..)))))))).................................................................
..............................................................63...........................................................124..............................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR040025(GSM532910)
G613T. (cervix)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532886(GSM532886)
G850T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
...................................................................TCTTGGGGTCACTCGGGTGGGAC..................................................................................................2319.009.009.00------------------------------------------------------
..................................................GTGAGCCTGTCTCGGAGTCTTGGGGTCACTCGGGTGGGACTTATCTGTACATCTCATCCTGTGCTCCCCACCGTT...............................................................7517.007.00-7.00-----------------------------------------------------
.......................................................CCTGTCTCGGAGTCTTGGGG.................................................................................................................2016.006.006.00------------------------------------------------------
...................................................................TCTTGGGGTCACTCGGGTG......................................................................................................1914.004.004.00------------------------------------------------------
.........................................................TGTCTCGGAGTCTTGGGGTCAC.............................................................................................................2213.003.003.00------------------------------------------------------
.................................TGGCTTCTTCCCGTCAG..........................................................................................................................................1713.003.00---------------2.00----------1.00----------------------------
.....................CTTTCAGGACCATGGCTT.....................................................................................................................................................1812.002.00-----------------1.00--------------------1.00----------------
.......................TTCAGGACCATGGCTTCTTCCCGTC............................................................................................................................................2512.002.00--1.00-------------1.00--------------------------------------
...GGCCCTGGTCATGCAGCT.......................................................................................................................................................................1812.002.00----2.00--------------------------------------------------
..........................................................................................TTATCTGTACATCTCATC................................................................................1812.002.00--------------------2.00----------------------------------
.......................TTCAGGACCATGGCTTCTTCC................................................................................................................................................2112.002.00------------------------1.00---------1.00--------------------
..............................................................CGGAGTCTTGGGGTCACT............................................................................................................1812.002.00------------1.00-----------------1.00------------------------
....................................................................................................ATCTCATCCTGTGCTCCGGA....................................................................202.000.00--------1.00----------------------------------1.00-----------
............CATGCAGCTCTTTCAGGA..............................................................................................................................................................1812.002.00----------2.00--------------------------------------------
......................................................................................................................................................................CTATGCAGACATCTTTCCCTCC2211.001.00--------------------------------------------1.00----------
......................TTTCAGGACCATGGCTTCTTCCCGTCAG..........................................................................................................................................2811.001.00------------------------------------------------1.00------
..........................AGGACCATGGCTTCTTCC................................................................................................................................................1811.001.00---------------------------------------------1.00---------
.................AGCTCTTTCAGGACCATGGCTTC....................................................................................................................................................2311.001.00-----------1.00-------------------------------------------
................CAGCTCTTTCAGGACCATGGCT......................................................................................................................................................2211.001.00-----------------------------------1.00-------------------
...........TCATGCAGCTCTTTCAGGT..............................................................................................................................................................191.000.00-------------------------------------1.00-----------------
...........TCATGCAGCTCTTTCAGGACCA...........................................................................................................................................................2211.001.00------1.00------------------------------------------------
........................................................................................................CATCCTGTGCTCCCCACCGTTTTTCTATCAG.....................................................311.000.00------------------------------------1.00------------------
...................CTCTTTCAGGACCATGGATTC....................................................................................................................................................211.000.00-----------------------------------------------1.00-------
.........................CAGGACCATGGCTTCTTTC................................................................................................................................................191.000.00---------1.00---------------------------------------------
..................................................GTGAGCCTGTCTCGGAGTCTTGG...................................................................................................................2311.001.00---1.00---------------------------------------------------
.....................CTTTCAGGACCATGGCTTCT...................................................................................................................................................2011.001.00-----1.00-------------------------------------------------
.....................................................................TTGGGGTCACTCGGGTGGGAC..................................................................................................2111.001.00--1.00----------------------------------------------------
........................................................................GGGTCACTCGGGTGGGACTTAT..............................................................................................2211.001.00-------1.00-----------------------------------------------
.........................................................................................CTTATCTGTACATCTCATCA...............................................................................201.000.00--------------------------------------------------1.00----
.....................................................................................GGGACTTATCTGTACATCTCATC................................................................................2311.001.00---------------------------------1.00---------------------
...........................................................................................TATCTGTACATCTCATCCTGTGCT.........................................................................2411.001.00-------------------------------1.00-----------------------
........................................................................................ACTTATCTGTACATCTCATC................................................................................2011.001.00----------------------1.00--------------------------------
..................................................................................GGTGGGACTTATCTGTACATCTCATA................................................................................261.000.00-----------------------------------------1.00-------------
.............................................................TCGGAGTCTTGGGGTCACTCGGGTGGGAC..................................................................................................2911.001.00---1.00---------------------------------------------------
........................TCAGGACCATGGCTTCTTC.................................................................................................................................................1911.001.00------------------1.00------------------------------------
..........................................................................GTCACTCGGGTGGGACTTAT..............................................................................................2011.001.00--------------------------------1.00----------------------
.....................CTTTCAGGACCATGGCTTT....................................................................................................................................................1911.002.00-----------1.00-------------------------------------------
..................................................................GTCTTGGGGTCACTCGGGTGGGACT.................................................................................................2511.001.00----------------------------1.00--------------------------
.............................................................................................TCTGTACATCTCATCCTGTGC..........................................................................2111.001.00-------------------------------------------------1.00-----
......................................................................................GGACTTATCTGTACATCTCA..................................................................................2011.001.00-------------------------1.00-----------------------------
.............................................................................................TCTGTACATCTCATCCTGTGCTCCCCATT..................................................................291.000.00---------------------------------------------------1.00---
...............................................................................................................................................................AGGCCCGCTATGCAGACATCTTT......2311.001.00-----------------------1.00-------------------------------
..........................AGGACCATGGCTTCTTCCCGTCA...........................................................................................................................................2311.001.00-------------------1.00-----------------------------------
..............TGCAGCTCTTTCAGGACCATGGCTCC....................................................................................................................................................261.000.00--------------1.00----------------------------------------
..............TGCAGCTCTTTCAGGACCACGGC.......................................................................................................................................................231.000.00-------------1.00-----------------------------------------
......................................................................TGGGGTCACTCGGGTGGGACTT................................................................................................2211.001.00------------------------------------------1.00------------
......................TTTCAGGACCATGGCGTAC...................................................................................................................................................191.000.00--------1.00----------------------------------------------
..............................................................CGGAGTCTTGGGGTCAC.............................................................................................................1711.001.00---1.00---------------------------------------------------
......................TTTCAGGACCATGGCATA....................................................................................................................................................181.000.00----1.00--------------------------------------------------
.....................................................................TTGGGGTCACTCGGGTGGGACTTATC.............................................................................................2611.001.00-----------------------------1.00-------------------------
...............................................................................................................................................................AGGCCCGCTATGCAGACATC.........2011.001.00--1.00----------------------------------------------------
.................AGCTCTTTCAGGACCATGGCTT.....................................................................................................................................................2211.001.00------------------1.00------------------------------------
.......................TTCAGGACCATGGCTTTAT..................................................................................................................................................191.000.00----------------------------------------1.00--------------
...........TCATGCAGCTCTTTCAGGACCATGGC.......................................................................................................................................................2611.001.00--1.00----------------------------------------------------
.....................CTTTCAGGACCATGGCTTC....................................................................................................................................................1911.001.00-----------------1.00-------------------------------------
.........................................................TGTCTCGGAGTCTTGGGG.................................................................................................................1811.001.00--1.00----------------------------------------------------
................CAGCTCTTTCAGGACCATGGCTTCTTC.................................................................................................................................................2711.001.00----------------1.00--------------------------------------
.....................CTTTCAGGACCATGGCTTCTTCCCG..............................................................................................................................................2511.001.00-----1.00-------------------------------------------------
......................................................................................................................CACCGTTTTTCTATCTC.....................................................1711.001.00----------------------------------------------------1.00--
........................................................CTGTCTCGGAGTCTTGGGGTCACTC...........................................................................................................2511.001.00-------1.00-----------------------------------------------
...........................................................TCTCGGAGTCTTGGGGTCACTCGG.........................................................................................................2411.001.00---1.00---------------------------------------------------
....................TCTTTCAGGACCATGGCTT.....................................................................................................................................................1911.001.00---------1.00---------------------------------------------
........................................................CTGTCTCGGAGTCTTGGGGTCACTCGGGTGG.....................................................................................................3111.001.00---1.00---------------------------------------------------
...............GCAGCTCTTTCAGGACCATGGCTT.....................................................................................................................................................2411.001.00----------------------------------------------1.00--------
..................GCTCTTTCAGGACCATGGC.......................................................................................................................................................1911.001.00-------------------1.00-----------------------------------
..............................................................................................CTGTACATCTCATCCTGTGCTCGTGA....................................................................261.000.00------------1.00------------------------------------------
..........................................................................................TTATCTGTACATCTCATCCTGTGC..........................................................................2411.001.00------1.00------------------------------------------------
..................GCTCTTTCAGGACCATGG........................................................................................................................................................1820.500.50---------------------0.50---------------------------------
............................................................................................ATCTGTACATCTCATCC...............................................................................1720.500.50------------------------------------------------------0.50
........................................................CTGTCTCGGAGTCTTGGG..................................................................................................................1820.500.50-----------------------------------------------------0.50-

Antisense strand
CCGGGCCCTGGTCATGCAGCTCTTTCAGGACCATGGCTTCTTCCCGTCAGGTGAGCCTGTCTCGGAGTCTTGGGGTCACTCGGGTGGGACTTATCTGTACATCTCATCCTGTGCTCCCCACCGTTTTTCTATCTCCAGCCCAGGCCACAGCCGCCTTCCAGGCCCGCTATGCAGACATCTTTCCCTCC
..............................................................(((.....(((((.(((..((((((((..((....))..)))))))).)))..)))))))).................................................................
..............................................................63...........................................................124..............................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR040025(GSM532910)
G613T. (cervix)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532886(GSM532886)
G850T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
...................................................................................................................................GGCCTGGGCTGGAGA.......................................... 1501.001.00---------------------------------------1.00---------------
...................................................................................................................................TCTCCAGCCCAGGCCACAGCAG................................... 221.000.00--------------1.00----------------------------------------
.......................................................CCCCAAGACTCCGAGACAGG................................................................................................................. 2011.001.00---------------------1.00---------------------------------
............................................................................................ATCTGTACATCTCATC................................................................................ 161.000.00-------------1.00-----------------------------------------
......................TTTCAGGACCATGGCTTCTCTGA............................................................................................................................................... 231.000.00---------------------------1.00---------------------------