ID: uc002oms.2_intron_0_0_chr19_40503065_f.5p
GENE: ZNF546(1)
chr19:40503015-40503264+


(4)
B-CELL 		(1)
BRAIN 		(1)
BREAST 		(15)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(1)
HELA 		(3)
OTHER 		(9)
SKIN 		(1)
TESTES 		(2)
XRN.ip

Sense strand
CAGTCACCTTAACCGTTATTATTCACTTGCGGGCGAGAAGTCCGAGCTAGGTGAGGCGGAACGGGACTCTTACGAGTAGGACTGGGGATAGAACTGCCGCCCAAAGTGAGGCGCTCCAGGGCCCAGACCTGGCGTGTCGTGCCCGCAGGGAGCCTCAGGCCTGTGCGTGCTTGGGGAGCGGAGAAGGGAAATTGTGTGACAAAATGTGGCAGACGGTGTATGTGTGTGTGTGCGCGCGACGGGGCGCCTG
.......................................................((((..(((.((((....))))....(((....)))..)))))))..........((((.(((((.......))))).)))).................................................................................................................
.......................................................56...............................................................................137...............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189785SRR189782SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040032(GSM532917)
G603N. (cervix)		GSM532887(GSM532887)
G761N. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
............................................................ACGGGACTCTTACGAGGCCT..........................................................................................................................................................................2010.000.00--10.00---------------------------------------
.............................................................................AGGACTGGGGATAGAACTG..........................................................................................................................................................1917.007.004.003.00----------------------------------------
.............................................................................AGGACTGGGGATAGAACTGC.........................................................................................................................................................2014.004.004.00-----------------------------------------
.............................................................................AGGACTGGGGATAGAACTGCCG.......................................................................................................................................................2213.003.00----3.00-------------------------------------
.........................................................................GAGTAGGACTGGGGATAGAA.............................................................................................................................................................2013.003.002.001.00----------------------------------------
.......................................................................ACGAGTAGGACTGGGGATA................................................................................................................................................................1913.003.002.001.00----------------------------------------
.......................................................................ACGAGTAGGACTGGGGATAGAA.............................................................................................................................................................2213.003.00-3.00----------------------------------------
................................GCGAGAAGTCCGAGCTAGGT......................................................................................................................................................................................................2012.002.002.00-----------------------------------------
.....................................................................................................................................................................................................................CGGTGTATGTGTGTGTGTGC.................2012.002.00-2.00----------------------------------------
.................................................................................................................CTCCAGGGCCCAGACCTGGC.....................................................................................................................2012.002.00-----2.00------------------------------------
................................................................................................................................................................................AGCGGAGAAGGGAAATTGTG......................................................2012.002.00-------2.00----------------------------------
...............................................................GGACTCTTACGAGTAGGACTGGGG...................................................................................................................................................................2412.002.002.00-----------------------------------------
..............................GGGCGAGAAGTCCGAGCTAGGTGAGG..................................................................................................................................................................................................2612.002.002.00-----------------------------------------
..........................................................................AGTAGGACTGGGGATAGAACTG..........................................................................................................................................................2212.002.002.00-----------------------------------------
........................................................................CGAGTAGGACTGGGGATA................................................................................................................................................................1812.002.00-2.00----------------------------------------
............................................................ACGGGACTCTTACGAGGCC...........................................................................................................................................................................192.000.00--2.00---------------------------------------
................................................................................................................................................................................AGCGGAGAAGGGAAATTG........................................................1812.002.00----------------------1.00-------1.00-----------
............................................................................TAGGACTGGGGATAGAACTG..........................................................................................................................................................2012.002.00-2.00----------------------------------------
.................................CGAGAAGTCCGAGCTAG........................................................................................................................................................................................................1711.001.00----------1.00-------------------------------
............................................................................................................................................................AGGCCTGTGCGTGCTGCTG...........................................................................191.000.00------1.00-----------------------------------
.........................................................................GAGTAGGACTGGGGATAGA..............................................................................................................................................................1911.001.00-1.00----------------------------------------
.........................CTTGCGGGCGAGAAGTCCGAGCTAGGTGAG...................................................................................................................................................................................................3011.001.00--------------1.00---------------------------
.............................................................CGGGACTCTTACGAGGCC...........................................................................................................................................................................181.000.00--1.00---------------------------------------
............................................................................TAGGACTGGGGATAGAACTGC.........................................................................................................................................................2111.001.00-1.00----------------------------------------
.........................................CCGAGCTAGGTGAGGCGGAAC............................................................................................................................................................................................2111.001.00----------------1.00-------------------------
...........................................................................................................................................TGCCCGCAGGGAGCCTCA.............................................................................................1811.001.00--------1.00---------------------------------
................................................................................ACTGGGGATAGAACTCTG........................................................................................................................................................181.000.00--------------------------------1.00---------
......................................AGTCCGAGCTAGGTGAGGCG................................................................................................................................................................................................2011.001.00---------------------------------1.00--------
...............................................................................GACTGGGGATAGAACTGC.........................................................................................................................................................1821.001.00-----0.50---------------------------------0.50--
................................................................................................................................................................................AGCGGAGAAGGGAAAGAA........................................................181.000.00-----------------------------1.00------------
...................................................................................................................CCAGGGCCCAGACCTCTGT....................................................................................................................191.000.00------1.00-----------------------------------
............................................................ACGGGACTCTTACGAGTAGGAC........................................................................................................................................................................2211.001.00---------------------1.00--------------------
................................................................................................................................................................................AGCGGAGAAGGGAAATTGTGTGACAAA...............................................2711.001.00-----------------1.00------------------------
......................................................GGCGGAACGGGACTCTTA..................................................................................................................................................................................1811.001.00--------1.00---------------------------------
........................ACTTGCGGGCGAGAAGTC................................................................................................................................................................................................................1811.001.00-------------------1.00----------------------
.................................................GGTGAGGCGGAACGGGACT......................................................................................................................................................................................1911.001.00----------1.00-------------------------------
...............................................................................................................................................................................GAGCGGAGAAGGGAAATTGT.......................................................2011.001.00------------------1.00-----------------------
......................................................................TACGAGTAGGACTGGGGATAG...............................................................................................................................................................2111.001.00-1.00----------------------------------------
..........................................................................................................................................................................................................................TATGTGTGTGTGTGCGCGTGCG..........221.000.00---------1.00--------------------------------
...............................................................................GACTGGGGATAGAACTG..........................................................................................................................................................1731.001.00-1.00----------------------------------------
..............................................CTAGGTGAGGCGGAACGGGA........................................................................................................................................................................................2011.001.00-1.00----------------------------------------
.............................................................................AGGACTGGGGATAGAACTGCCGC......................................................................................................................................................2311.001.00-----------------------1.00------------------
....................................................................CTTACGAGTAGGACTGGGGA..................................................................................................................................................................2011.001.001.00-----------------------------------------
...............................................................GGACTCTTACGAGTAGGACTGGGGA..................................................................................................................................................................2511.001.001.00-----------------------------------------
...........................................................................................................................................................................................................................ATGTGTGTGTGTGCGCTTTT...........201.000.00--------------------1.00---------------------
...................................................................................................................................................................................................................GACGGTGTATGTGTGTGTG....................1911.001.00---------------------------1.00--------------
..........................................................................................................................................................................................................................TATGTGTGTGTGTGCGGTG.............191.000.00---------1.00--------------------------------
.......................CACTTGCGGGCGAGAAGT.................................................................................................................................................................................................................1811.001.00-----------1.00------------------------------
...........................................................................................AACTGCCGCCCAAAGTCCGG...........................................................................................................................................201.000.00---1.00--------------------------------------
............................................................ACGGGACTCTTACGAGGCCC..........................................................................................................................................................................201.000.00--1.00---------------------------------------
.......................................................GCGGAACGGGACTCTTACGAG..............................................................................................................................................................................2111.001.00-1.00----------------------------------------
..................................................GTGAGGCGGAACGGGACTCT....................................................................................................................................................................................2011.001.00----------------------------1.00-------------
.................................................................ACTCTTACGAGTAGGACTGGGGATAGAACTGC.........................................................................................................................................................3211.001.00-------------------------------------1.00----
............................................................................TAGGACTGGGGATAGAAC............................................................................................................................................................1811.001.00-------------------------------1.00----------
......................................................................TACGAGTAGGACTGGGGATAGAA.............................................................................................................................................................2311.001.00------------------------1.00-----------------
................................................................GACTCTTACGAGTAGGACTGGGGATAGA..............................................................................................................................................................2811.001.00---------------1.00--------------------------
.......................................................................................................................................................................TGCTTGGGGAGCGGAGA..................................................................1720.500.50--------------------------------------0.50---
....................................................................................................................................................................................GAGAAGGGAAATTGTGTG....................................................1820.500.50----------------------------------------0.50-
.............................................................................AGGACTGGGGATAGAA.............................................................................................................................................................1660.170.17-----------------------------------------0.17

Antisense strand
CAGTCACCTTAACCGTTATTATTCACTTGCGGGCGAGAAGTCCGAGCTAGGTGAGGCGGAACGGGACTCTTACGAGTAGGACTGGGGATAGAACTGCCGCCCAAAGTGAGGCGCTCCAGGGCCCAGACCTGGCGTGTCGTGCCCGCAGGGAGCCTCAGGCCTGTGCGTGCTTGGGGAGCGGAGAAGGGAAATTGTGTGACAAAATGTGGCAGACGGTGTATGTGTGTGTGTGCGCGCGACGGGGCGCCTG
.......................................................((((..(((.((((....))))....(((....)))..)))))))..........((((.(((((.......))))).)))).................................................................................................................
.......................................................56...............................................................................137...............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189785SRR189782SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040032(GSM532917)
G603N. (cervix)		GSM532887(GSM532887)
G761N. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
.............................................................................................................CAGGTCTGGGCCCTGGAGCGCC....................................................................................................................... 2211.001.00------------1.00-----------------------------
.......................................................................................ATAGAACTGCCGCCCATTC................................................................................................................................................ 191.000.00---1.00--------------------------------------
..............................................................................GGCAGTTCTATCCCCAGTCC........................................................................................................................................................ 2011.001.00-----------------------------------1.00------
........................................................................................................................................................CCCCAAGCACGCACAGGCCTGAGG.......................................................................... 2411.001.001.00-----------------------------------------
............................................................................................................................................................................GGGGAGCGGAGAAGGCGCC........................................................... 191.000.00----------------------------------1.00-------
.........................................................................................................................................CAGGCCTGAGGCTCCCTGCGGGCACG....................................................................................... 2611.001.00------------------------------------1.00-----
.........................................................................................................................................................CTCAGGCCTGTGCGTCCAT.............................................................................. 191.000.00-------------------------1.00----------------
.......................................................................................................................................................................................................................................GCGCGCGACGGGGCGCCGG 191.000.00-------------1.00----------------------------
...........................................................................................................................................................................................................................CCCCGTCGCGCGCACACACACACAT...... 2511.001.00--------------------------1.00---------------
......................................................GGCGGAACGGGACTCA.................................................................................................................................................................................... 161.000.00---1.00--------------------------------------