ID: uc002ojj.1_intron_6_0_chr19_39329656_r.3p
GENE: HNRNPL(1)
chr19:39329606-39329855-


(1)
AGO2.ip 		(11)
B-CELL 		(13)
BREAST 		(31)
CELL-LINE 		(2)
CERVIX 		(3)
FIBROBLAST 		(5)
HEART 		(1)
HELA 		(6)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(42)
SKIN 		(1)
UTERUS 		(2)
XRN.ip

Sense strand
AGTTAAAAACATGGCCCAGGCTCTGCTTCTCACTATGGGTTGAGCACTTGGTGTGGGCCAGGCATGTTTTTCTAGTGGTCCCGATTAACTGTGAGGACATGGGAGGCCAGAGCAGGGGTTATTATCACTAACTTGGGAGGGGCAGGAGAGGGGACCCTGGCAGCTGGACAGAGGTGCTGACTGCAGCTACTCTCCCCAAGGTGAAATTCATGAAAAGCAAGCCGGGGGCCGCCATGGTGGAGATGGCTGA
...................................................................................................((((...((((.((.((((((....((.((..(((....)))..)))).....)))))).))..))))..((((..((((....))))..)))).))))....................................................
.................................................................................82....................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189784SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR189783SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189786SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR191481(GSM715591)
43genomic small RNA (size selected RNA from t. (breast)		SRR189785SRR191535(GSM715645)
181genomic small RNA (size selected RNA from . (breast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191583(GSM715693)
97genomic small RNA (size selected RNA from t. (breast)		SRR038859(GSM458542)
MM386. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		SRR191518(GSM715628)
83genomic small RNA (size selected RNA from t. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR038856(GSM458539)
D11. (cell line)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR343335SRR343337
.................................................................................................................................................................................TGACTGCAGCTACTCTCCCCAAG..................................................231118.00118.00-10.00--6.008.003.005.004.004.005.003.00-3.002.00-3.003.002.001.00-1.002.002.004.00-1.002.003.00--1.003.00---1.00--1.001.00----1.00-2.001.002.00-1.00-----2.00-1.00--1.001.00-1.001.002.00-1.00---1.00-----1.00-----1.00-1.00--1.001.001.00-----1.00---1.00--1.00---1.00-1.00-1.001.001.00-1.001.00------
................................................................................................................................................................................CTGACTGCAGCTACTCTCCCCAAG..................................................24180.0080.00---16.00-1.00-2.002.002.00-2.00--2.00-1.002.001.001.001.001.002.002.00------3.00---3.00-1.00-1.002.001.002.00---2.00--1.00--1.002.00--1.002.00--1.002.00-1.001.00-1.00--------1.00--1.001.00-1.001.00--1.00-1.00------1.00---------1.00---1.001.00-1.00-----1.00---1.00----
.................................................................................................................................................................................TGACTGCAGCTACTCTCCCCAA...................................................2217.007.00-1.00-----------1.00-5.00-------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................TGGACAGAGGTGCTGACTGCA.................................................................2116.006.00-----------------------------3.00------------3.00----------------------------------------------------------------------------------
.................................................................................................................................................................................TGACTGCAGCTACTCTCCCCAAT..................................................2315.007.00-5.00---------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................CTGGCAGCTGGACAGAGG............................................................................1815.005.00--------------1.00----------------------2.00--------------------------------------1.00-----------------------------------1.00------------
.............................................................................................AGGACATGGGAGGCCAGAGCAGGGGC...................................................................................................................................264.000.003.00-1.00--------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................CTGACTGCAGCTACTCTCCCC.....................................................2114.004.00------------3.00---------------------------------------------------------------------------1.00------------------------------------
.................................................................................................................................................................................TGACTGCAGCTACTCTCCCC.....................................................2014.004.00------------2.00----------------------2.00-----------------------------------------------------------------------------------------
........ACATGGCCCAGGCTCTGCTTCTCACTACGGG...................................................................................................................................................................................................................314.000.004.00----------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................AAGCAAGCCGGGGGCCGCCATGGTGGAG........2814.004.004.00----------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................AGGGGCAGGAGAGGGGACCCTGGCAGCCGG...................................................................................304.000.003.00-1.00--------------------------------------------------------------------------------------------------------------------------
......................................................................................AACTGTGAGGACATGGGAGGCCAG............................................................................................................................................2413.003.003.00----------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TGACTGCAGCTACTCTCCCCA....................................................2113.003.00-3.00---------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................GAGAGGGGACCCTGGCAGCTGGACA................................................................................2513.003.00------3.00----------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................AGGTGAAATTCATGAAAAGCAAGCC...........................2513.003.00--------------------------------------------3.00--------------------------------------------------------------------------------
...........TGGCCCAGGCTCTGCTTCTCACTACGGG...................................................................................................................................................................................................................283.000.002.00-1.00--------------------------------------------------------------------------------------------------------------------------
................................................................................................ACATGGGAGGCCAGAGCAGGGGTC..................................................................................................................................243.000.003.00----------------------------------------------------------------------------------------------------------------------------
...................................................................................ATTAACTGTGAGGACATGGGAGGCC..............................................................................................................................................2512.002.00-----------------------------------------------------2.00-----------------------------------------------------------------------
..........................................AGCACTTGGTGTGGGCCAGGCA..........................................................................................................................................................................................2212.002.00--2.00--------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................GCTGACTGCAGCTACTCTCCCCAAG..................................................2512.002.00------2.00----------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TGACTGCAGCTACTCTCCCCAAA..................................................2312.007.00-1.00------1.00--------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................CTGACTGCAGCTACTCTCCCCCAG..................................................2412.004.00-------1.00--------------------------------------------------------------------------------------------------1.00------------------
...................................................................................................TGGGAGGCCAGAGCAGGGGTTATCATC............................................................................................................................272.000.002.00----------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................CTGACTGCAGCTACTCTCCCCAA...................................................2312.002.00------------1.00---1.00------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................GCTGGACAGAGGTGCTGACTGCAGCTACT...........................................................2912.002.00-------------------2.00---------------------------------------------------------------------------------------------------------
.......................................................................................ACTGTGAGGACATGGGAGGCCAGAGCAGGGGC...................................................................................................................................322.000.001.00-1.00--------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................CTGGACAGAGGTGCTGACTGC..................................................................2112.002.00--------------------------------------2.00--------------------------------------------------------------------------------------
....................................................................................................................................................AGGGGACCCTGGCAGCTGGACAGAGGT...........................................................................2712.002.00----2.00------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................CTGCAGCTACTCTCCCCAAG..................................................2012.002.00-----------------------------------------1.00----------------------------------------1.00------------------------------------------
.................................................................................................................................................................................................................................GGGCCGCCATGGTGGAGA.......1812.002.00----------------------------------------------------------------2.00------------------------------------------------------------
.........................................................................................................................................................................................................................................ATGGTGGAGATGGCTTTAA192.000.00----------------------------------------------------------2.00------------------------------------------------------------------
.................................................................................................................................................................................TGACTGCAGCTACTCTCCCCAAGAA................................................2512.00118.00-------------------------------1.00-----1.00---------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AGCAAGCCGGGGGCCGCCA................1912.002.00--------------------------------------------------2.00--------------------------------------------------------------------------
.....................................................................................TAACTGTGAGGACATGGGAGGC...............................................................................................................................................2212.002.00-------------------------------------------2.00---------------------------------------------------------------------------------
...............................................................................................................................................AGGAGAGGGGACCCTGGCAGCCGG...................................................................................242.000.001.00-1.00--------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................AGGGGACCCTGGCAGCTGGACAGAGGCG..........................................................................282.000.002.00----------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................CTGGCAGCTGGACAGAG.............................................................................1721.501.50----1.50------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AGCAAGCCGGGGGCCGCCATGGCGG..........251.000.00--1.00--------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................CAGCTGGACAGAGGTGCTGACTG...................................................................2311.001.00-------------------------------1.00---------------------------------------------------------------------------------------------
..............................................................................................................................................CAGGAGAGGGGACCCTGGCAGCCGG...................................................................................251.000.00--1.00--------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................AGAGGGGACCCTGGCAGCCGG...................................................................................211.000.001.00----------------------------------------------------------------------------------------------------------------------------
..........................................................................................GTGAGGACATGGGAGGCCAGAGCAGGGGTA..................................................................................................................................301.000.001.00----------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GGTGAAATTCATGAAAAGCAAGCCGGGGGCCGC..................3311.001.00------------------------------------------------------------------------1.00----------------------------------------------------
.....................................................................................................................................TGGGAGGGGCAGGAGAGGGGACCCTGGCAG.......................................................................................3011.001.00-------------------------------------------------------------1.00---------------------------------------------------------------
......AAACATGGCCCAGGCTCCGCT...............................................................................................................................................................................................................................211.000.001.00----------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................CATGAAAAGCAAGCCGGGGGCCGCCA................2611.001.00------------------------------------------------------------------1.00----------------------------------------------------------
.............................................................................................AGGACATGGGAGGCCAGAGCAGGGGTTACT...............................................................................................................................301.000.001.00----------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................CTGACTGCAGCTACTCTCCCCAAGA.................................................2511.0080.00----1.00------------------------------------------------------------------------------------------------------------------------
...........................................................................................TGAGGACATGGGAGGCCAGAGCAGGGG....................................................................................................................................2711.001.00--1.00--------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................GTGAAATTCATGAAAAGCAAG.............................2111.001.00-------------------------1.00---------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AGCAAGCCGGGGGCCGCCATGGTGGAG........2711.001.001.00----------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................TTGGGAGGGGCAGGAGAGGG..................................................................................................2011.001.00----1.00------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................AGCTGGACAGAGGTGCTG.......................................................................1811.001.00-------------------------------------------------------------------------------------------------1.00---------------------------
..................................ATGGGTTGAGCACTTGGTGTGGGCCAGGCA..........................................................................................................................................................................................3011.001.00--1.00--------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................TGGGAGGGGCAGGAGAGGGGACCCTGGCAGCCG....................................................................................331.000.00--1.00--------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TGACTGCAGCTACTCTCCCCACT..................................................2311.003.00-----------------------------------------------------------------------------------------------1.00-----------------------------
..............................................................................................................................................................................TGCTGACTGCAGCTACTCTCCCC.....................................................2311.001.00---------1.00-------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................CTGACTGCAGCTACTCTCCCCA....................................................2211.001.00---------------------------1.00-------------------------------------------------------------------------------------------------
.........................................................................................TGTGAGGACATGGGAGGCCAGAGCAGGGGTC..................................................................................................................................311.000.001.00----------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................CATGAAAAGCAAGCCGGGGGC.....................2111.001.00----------------------------------------------1.00------------------------------------------------------------------------------
.................................................................................................................................................................................TGACTGCAGCTACTCTCCCCATCT.................................................2411.003.00-------------------------------------------------------------1.00---------------------------------------------------------------
..................................................................................................................................................................................GACTGCAGCTACTCTCCCCAAGA.................................................2311.001.00------------------------------------------------------------------------------------------------1.00----------------------------
...........................................................................................TGAGGACATGGGAGGCCAGAGCAGGGGTC..................................................................................................................................291.000.001.00----------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................AAGCAAGCCGGGGGCCGC..................1811.001.00--------------------1.00--------------------------------------------------------------------------------------------------------
..............................CACTATGGGTTGAGCACTTGGTGTGG..................................................................................................................................................................................................2611.001.00---------------------------------------------------------------------------1.00-------------------------------------------------
....................................................................................................................................................................................................................AAAAGCAAGCCGGGGGCCGGCA................221.000.00--------------------1.00--------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TGACTGCAGCTACTCTCCCCAAGAAG...............................................2611.00118.00----1.00------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TGACTGCAGCTACTCTCCCTAAG..................................................2311.001.00-1.00---------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................GCTGGACAGAGGTGCTGACTGC..................................................................2211.001.00-----------------------------------------------------------------------------------------------------1.00-----------------------
.................................................................................................CATGGGAGGCCAGAGCAGGGGTTACT...............................................................................................................................261.000.001.00----------------------------------------------------------------------------------------------------------------------------
.............................................................................................AGGACATGGGAGGCCAGAGCAGGGGTTAC................................................................................................................................291.000.001.00----------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................GTGAAATTCATGAAAAGCAAGCCG..........................2411.001.00-------------------------1.00---------------------------------------------------------------------------------------------------
...................................................................................................TGGGAGGCCAGAGCAGGGGTTATTACC............................................................................................................................271.000.001.00----------------------------------------------------------------------------------------------------------------------------
................................................TGGTGTGGGCCAGGCATGTTTC....................................................................................................................................................................................221.000.001.00----------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGATTAACTGTGAGGACATGGGAGGC...............................................................................................................................................2811.001.00-------------------------------------------1.00---------------------------------------------------------------------------------
........ACATGGCCCAGGCTCTGCTCCTC...........................................................................................................................................................................................................................231.000.001.00----------------------------------------------------------------------------------------------------------------------------
.................................................................................CGATTAACTGTGAGGACA.......................................................................................................................................................1811.001.00----------------------------------------1.00------------------------------------------------------------------------------------
.................................................................................................................................................................................TGACTGCAGCTACTCTCCC......................................................1911.001.00-1.00---------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................CCGGGGGCCGCCATGGTGGAGATG.....2411.001.00--------------------------1.00--------------------------------------------------------------------------------------------------
..................................ATGGGTTGAGCACTTGGTGTGGGCCAGGCACG........................................................................................................................................................................................3211.001.001.00----------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TGACTGCAGCTACTCTCCCCAATTT................................................2511.007.00-1.00---------------------------------------------------------------------------------------------------------------------------
...........................................................................................TGAGGACATGGGAGGCCAGAGCAGGGGCT..................................................................................................................................2911.001.00--1.00--------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................GACTGCAGCTACTCTCCCCAAGT.................................................2311.001.00------------------1.00----------------------------------------------------------------------------------------------------------
...........................................................................................TGAGGACATGGGAGGCCAGAGCAGGGGCA..................................................................................................................................2911.001.00--1.00--------------------------------------------------------------------------------------------------------------------------
...................................................................................................TGGGAGGCCAGAGCAGGGGTCAT................................................................................................................................231.000.001.00----------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................AAAAGCAAGCCGGGGGCCGC..................2011.001.00--------------------1.00--------------------------------------------------------------------------------------------------------
..............CCCAGGCTCTGCTTCTAGA.........................................................................................................................................................................................................................191.000.00---------------------------------------------------------------------------------------------------1.00-------------------------
..............................................................................TCCCGATTAACTGTGAGGACATGGGAGG................................................................................................................................................2811.001.00-----1.00-----------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGCAGCTACTCTCCCCAAG..................................................1911.001.00----------------------------------------------------------------------------------------------1.00------------------------------
.......................................................................................................................................GGAGGGGCAGGAGAGGGGACCCTGGCAGCTG....................................................................................3111.001.00---------------------------------1.00-------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................AAGGTGAAATTCATGAAAAGCAAGCCGGGG.......................3011.001.00-------------------------1.00---------------------------------------------------------------------------------------------------
...................................................................................................TGGGAGGCCAGAGCAGGGGTC..................................................................................................................................211.000.001.00----------------------------------------------------------------------------------------------------------------------------
...............................................................................................GACATGGGAGGCCAGAGCAGGGGTTATTACC............................................................................................................................311.000.00--------------------------------------------------------------------1.00--------------------------------------------------------
..............................................................................................................................................................................TGCTGACTGCAGCTACTCTCCCCAAG..................................................2611.001.00---------------------1.00-------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................TGCTGACTGCAGCTACTCTG........................................................201.000.00------------------------------------------------------1.00----------------------------------------------------------------------
.................................................................................................................................................................................TGACTGCAGCTACTCTCCCCAAGA.................................................2411.00118.00------1.00----------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................AAAAGCAAGCCGGGGGCCGCCATGGCGG..........281.000.00--1.00--------------------------------------------------------------------------------------------------------------------------
....................................................................................TTAACTGTGAGGACATGGGAGGCC..............................................................................................................................................2411.001.00------------------------------------1.00----------------------------------------------------------------------------------------
........................................................................................................................................................................................................GTGAAATTCATGAAAAGCAAGCCGGGGGCCGCCA................3411.001.00---------------------------------1.00-------------------------------------------------------------------------------------------
......................................................................................................................................................................................................AGGTGAAATTCATGAAAAGCAAGCCGGGGG......................3011.001.00------------------------------------------------------1.00----------------------------------------------------------------------
.............................TCACTATGGGTTGAGC.............................................................................................................................................................................................................1611.001.00-------------------------------------------------------1.00---------------------------------------------------------------------
...............................................................................................................................................................................GCTGACTGCAGCTACTCTCCCC.....................................................2211.001.00----------1.00------------------------------------------------------------------------------------------------------------------
...................................................................................................TGGGAGGCCAGAGCAGGGGC...................................................................................................................................201.000.001.00----------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................TGGGAGGGGCAGGAGAGGGGACCCTGGCAGCCGG...................................................................................341.000.001.00----------------------------------------------------------------------------------------------------------------------------
.............................................................................................AGGACATGGGAGGCCAGAGCAGGGGTCAT................................................................................................................................291.000.001.00----------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................GCAAGCCGGGGGCCGCCATA..............201.000.00-----------------------------------------------------------------------------------1.00-----------------------------------------
........................................................................................................................................................................................................................GCAAGCCGGGGGCCGTCGG...............191.000.00-------------1.00---------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................GACTGCAGCTACTCTCCCCAAG..................................................2211.001.00---------------------1.00-------------------------------------------------------------------------------------------------------
................................................................................................................................................................................CTGACTGCAGCTACTCTCCCCAAGT.................................................2511.0080.00--------------------------------------------------------------------------------------------------------1.00--------------------
.....................................................................................TAACTGTGAGGACATGGGAGGCCAG............................................................................................................................................2511.001.00--1.00--------------------------------------------------------------------------------------------------------------------------
.......AACATGGCCCAGGCTCTGCTTCTCACTACGGG...................................................................................................................................................................................................................321.000.00--1.00--------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................GCCGGGGGCCGCCATGGTG...........1911.001.00-----------------------------------------------------------------------1.00-----------------------------------------------------
.....................................................................................................................................................................................................AAGGTGAAATTCATGAAAAGCAAGCCG..........................2711.001.00----------------------------------------------------------------------1.00------------------------------------------------------
..........ATGGCCCAGGCTCTGCTTCTCACTACG.....................................................................................................................................................................................................................271.000.00--------------------------------------------------------------------1.00--------------------------------------------------------
......................................................................................AACTGTGAGGACATGGGAGGC...............................................................................................................................................2111.001.00---------------------------------1.00-------------------------------------------------------------------------------------------
...............................................................................................GACATGGGAGGCCAGAGCAGGGGTT..................................................................................................................................2511.001.00--------------------------1.00--------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TGACTGCAGCTACTCTCCCCAT...................................................2211.003.00-1.00---------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................TGGGAGGGGCAGGAGAGTAAA................................................................................................211.000.00-----------1.00-----------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................TTCATGAAAAGCAAGCCGGG........................2011.001.00----------------------------------------------1.00------------------------------------------------------------------------------
....................................................................................................................................................AGGGGACCCTGGCAGCTGGA..................................................................................2011.001.00-----------------------------------1.00-----------------------------------------------------------------------------------------
.................................................................................................................................................................................TGACTGCAGCTACTCTCCCCAAGGTG...............................................2611.001.00-----------------------------------------------------------------------------------------1.00-----------------------------------
...........................................................................................TGAGGACATGGGAGGCCAGAGCAGGGGC...................................................................................................................................2811.001.001.00----------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................CATGAAAAGCAAGCCG..........................1620.500.50----------------------------------------------------------------------0.50------------------------------------------------------
......................................................................................................................................GGGAGGGGCAGGAGAGGGGA................................................................................................2020.500.50---------------------------------------------------------------------0.50-------------------------------------------------------
.....................................................................................................................................................................................................AAGGTGAAATTCATGAAAA..................................1920.500.50-------------------------------------------------------------------------------------------------------------------------0.50---
......................................................................................AACTGTGAGGACATGGG...................................................................................................................................................1720.500.50-------------------------0.50---------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................CCATGGTGGAGATGGCTGA1930.330.33--------------------------0.33--------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................CCATGGTGGAGATGGCTGACGGG2330.330.33-----------------------------------------------------------------------0.33-----------------------------------------------------
........................................................................................................................ATTATCACTAACTTG...................................................................................................................1580.250.25---------------------------------------------------------------------------------------------------------------------------0.120.12
.........................................................................................................................................................................................................................................ATGGTGGAGATGGCTGA1760.170.17--------------------------------------------------------------------------------------------------------------------------0.17--
.........CATGGCCCAGGCTCTG.................................................................................................................................................................................................................................1670.140.14----------0.14------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................GCTACTCTCCCCAAG..................................................1570.140.14-----------0.14-----------------------------------------------------------------------------------------------------------------
..................................................................................................................................................AGAGGGGACCCTGGCA........................................................................................1680.120.12---------------------------0.12-------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................CATGAAAAGCAAGCC...........................1590.110.11----------------------------------------------0.11------------------------------------------------------------------------------

Antisense strand
AGTTAAAAACATGGCCCAGGCTCTGCTTCTCACTATGGGTTGAGCACTTGGTGTGGGCCAGGCATGTTTTTCTAGTGGTCCCGATTAACTGTGAGGACATGGGAGGCCAGAGCAGGGGTTATTATCACTAACTTGGGAGGGGCAGGAGAGGGGACCCTGGCAGCTGGACAGAGGTGCTGACTGCAGCTACTCTCCCCAAGGTGAAATTCATGAAAAGCAAGCCGGGGGCCGCCATGGTGGAGATGGCTGA
...................................................................................................((((...((((.((.((((((....((.((..(((....)))..)))).....)))))).))..))))..((((..((((....))))..)))).))))....................................................
.................................................................................82....................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189784SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR189783SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189786SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR191481(GSM715591)
43genomic small RNA (size selected RNA from t. (breast)		SRR189785SRR191535(GSM715645)
181genomic small RNA (size selected RNA from . (breast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191583(GSM715693)
97genomic small RNA (size selected RNA from t. (breast)		SRR038859(GSM458542)
MM386. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		SRR191518(GSM715628)
83genomic small RNA (size selected RNA from t. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR038856(GSM458539)
D11. (cell line)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR343335SRR343337
............................................................................................................................................................................................................................GCCGGGGGCCGCCATGCGC........... 191.000.00----------------------------------------------------------------------------------------------------1.00------------------------
..................................................................................................................GGGGTTATTATCACTAGGT..................................................................................................................... 191.000.00-----------------------------------------------------------------------------------------------------------------------1.00-----
...................................................................................................TGGGAGGCCAGAGCAGGGC.................................................................................................................................... 191.000.001.00----------------------------------------------------------------------------------------------------------------------------
..............................................................................................TCTGGCCTCCCATGTCC........................................................................................................................................... 1740.250.25--------------------------------------------------------------------------------------------------------------------------0.25--
.....................................................................................................CCCCTGCTCTGGCCTCC.................................................................................................................................... 1750.200.20-------------------------0.20---------------------------------------------------------------------------------------------------