ID: uc002oct.2_intron_4_0_chr19_36503992_r
GENE: (2)
chr19:36503942-36504295-


(1)
BREAST 		(7)
CELL-LINE 		(1)
FIBROBLAST 		(5)
HEART 		(7)
HELA 		(2)
OTHER 		(5)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AGGAGCAGGACGCCAGAGTCCCAGCCCTGGAACCGTTCAGAGTGGAGCAGGTTGTCAGAACTCAGGGTGCAGAGGGTGAAGGAGGCAGGCTGATTCCTGAGTTCTTGGGTTGGGACTGCCCCCTTCCACCAAATTCATTCTTACTGTCAGAGTCCATTCTGGAATGGCACTGGTCCCTTGACTTTAGACCCTGACCTGTCTGAGGACATCCTGAGCCTGTCTCCAGGCATAGGGGTTGCTCTGTGATGATATGTCCTCTGTGTGGGTTGAAGGGCCACACCTTCAGGGGGTCTTTCTATCCTAGGCACCACCTGTAATCTACTATGTCCCTGACTTCATCTCCAAAGAAGAGGA
..........................................................................((((((((.(((((.((....(((((....)))))...)).))))).))))).)))..............(((((...(((.....))).)))))...((((...(((.((((...))))...)))...))))...................................................................................................................................................
........................................................................73.....................................................................................................................................208................................................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191579(GSM715689)
102genomic small RNA (size selected RNA from . (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)
...................................................................................................................................................................................................CTGTCTGAGGACATCCTGAGCCTGTCTCCAGGCATAGGGGTTGCTCTGTGATGATA.......................................................................................................56123.0023.0015.00-3.002.00-3.00--------------------------
...................................................................................................................................................................................................CTGTCTGAGGACATCCTGAGCCTGTCTCCAGGCATAGGGGTTGCTCTGTGATGATATG.....................................................................................................58118.0018.0012.005.001.00-----------------------------
...................................................................................................................................................................................................CTGTCTGAGGACATCCTGAGCCTGTCTCCAGGCATAGGGGTTGCTCTGTGATGATATGTC...................................................................................................6015.005.003.002.00------------------------------
...................................................................................................................................................................................................CTGTCTGAGGACATCCTGAGCCTGTCTCCAGGCATAGGGGTTGCTCTGTGATGATAT......................................................................................................5714.004.002.00-1.001.00----------------------------
..................................................................................................................................................................................................CCTGTCTGAGGACATCCTGAGCCTGTCTCCAGGCATAGGGGTTGCTCTGTGATGATATG.....................................................................................................5913.003.003.00-------------------------------
...................................................................................................................................................................................................CTGTCTGAGGACATCCTGAGCCTGTCTCCAGGCATAGGGGTTGCTCTGTGATGATAA......................................................................................................5713.0023.003.00-------------------------------
...................................................................................................................................................................................................CTGTCTGAGGACATCCTGAGCCTGTCTCCAGGCATAGGGGTTGCTCTGTGATGATATGT....................................................................................................5913.003.002.00-1.00-----------------------------
...................................................................................................................................................................................................CTGTCTGAGGACATCCTGAGCCTGTC.....................................................................................................................................2612.002.00------------1.00-1.00-----------------
...................................................................................................................................................................................................CTGTCTGAGGACATCCTGAGCCTGTCTCCAGGCATAGGGGTTGCTCTGTGATGAT........................................................................................................5512.002.001.00-1.00-----------------------------
....................................................................................................................................................................................................TGTCTGAGGACATCCTGAGCCTGTCTCCAGGCATAGGGGTTGCTCTGTGATGATATG.....................................................................................................5712.002.002.00-------------------------------
...........................................................................................................................................................................................ACCCTGACCTGTCTGCA......................................................................................................................................................171.000.00--------------------1.00-----------
.....................................CAGAGTGGAGCAGGTTGTCAGAACT....................................................................................................................................................................................................................................................................................................2511.001.00------------------------1.00-------
.................................................................................................................................................................................................ACCTGTCTGAGGACATCCTGAGCCTGTCTCCAGGCATAGGGGTTGCTCTGTGATGATATG.....................................................................................................6011.001.00-1.00------------------------------
...................................................................................................................................................................................................CTGTCTGAGGACATCCTGAGCCTGTCTCCAGGCATAGGGGTTGCTCTGTGATG..........................................................................................................5311.001.001.00-------------------------------
.............................................................................GAAGGAGGCAGGCTGATTTTTC...............................................................................................................................................................................................................................................................221.000.00---------------1.00----------------
..........................CTGGAACCGTTCAGAGTGGAGCAG................................................................................................................................................................................................................................................................................................................2411.001.00------------------1.00-------------
.........................................................................................................................................................................................AGACCCTGACCTGTCTGAGGACATCCTGAGCC.........................................................................................................................................3211.001.00-----------1.00--------------------
................................................................................................................................................................................................................................................................................................................GCACCACCTGTAATCTGGCA..............................201.000.00-------------------1.00------------
...................................................................................................................................................................ATGGCACTGGTCCCTTCACC...........................................................................................................................................................................201.000.00----------------1.00---------------
.....................CAGCCCTGGAACCGTTCAGA.........................................................................................................................................................................................................................................................................................................................2011.001.00----------1.00---------------------
...................................................................................................................................................................................................CTGTCTGAGGACATCCTGAGCCTGTCTCCAGGCATAGGGGTTGCTCTGTGATGATATGTAA..................................................................................................6111.003.001.00-------------------------------
.................................CGTTCAGAGTGGAGCAG................................................................................................................................................................................................................................................................................................................1711.001.00---------------------1.00----------
..................................................GTTGTCAGAACTCAGGGA..............................................................................................................................................................................................................................................................................................181.000.00----------------------1.00---------
....................................................................................................................................................................................................TGTCTGAGGACATCCTGAGCCTGTCTCCAGGCATAGGGGTTGCTCTGTGATGATA.......................................................................................................5511.001.001.00-------------------------------
.................................................GGTTGTCAGAACTCAGGG...............................................................................................................................................................................................................................................................................................1820.500.50----------------------------0.50---
...................................................................................................................................................................................................................................................................................................................................ATGTCCCTGACTTCATC..............1720.500.50-----------------------------0.50--

Antisense strand
AGGAGCAGGACGCCAGAGTCCCAGCCCTGGAACCGTTCAGAGTGGAGCAGGTTGTCAGAACTCAGGGTGCAGAGGGTGAAGGAGGCAGGCTGATTCCTGAGTTCTTGGGTTGGGACTGCCCCCTTCCACCAAATTCATTCTTACTGTCAGAGTCCATTCTGGAATGGCACTGGTCCCTTGACTTTAGACCCTGACCTGTCTGAGGACATCCTGAGCCTGTCTCCAGGCATAGGGGTTGCTCTGTGATGATATGTCCTCTGTGTGGGTTGAAGGGCCACACCTTCAGGGGGTCTTTCTATCCTAGGCACCACCTGTAATCTACTATGTCCCTGACTTCATCTCCAAAGAAGAGGA
..........................................................................((((((((.(((((.((....(((((....)))))...)).))))).))))).)))..............(((((...(((.....))).)))))...((((...(((.((((...))))...)))...))))...................................................................................................................................................
........................................................................73.....................................................................................................................................208................................................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191579(GSM715689)
102genomic small RNA (size selected RNA from . (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)
..................................GTTCAGAGTGGAGCATCTG............................................................................................................................................................................................................................................................................................................. 194.000.00----1.00-2.00--------------------1.00----
..................................................................................................................................................................................................................CTGAGCCTGTCTCCACA............................................................................................................................... 171.000.00-------1.00------------------------
..................................................................GTGCAGAGGGTGAAGGATC............................................................................................................................................................................................................................................................................. 191.000.00--------1.00-----------------------
................................................................................................................................................................................CTTGACTTTAGACCCTTT................................................................................................................................................................ 181.000.00-----------------1.00--------------
..................................GTTCAGAGTGGAGCAGTCTG............................................................................................................................................................................................................................................................................................................ 201.000.00----1.00---------------------------
....................TCTGAACGGTTCCAGGGCTGG......................................................................................................................................................................................................................................................................................................................... 2111.001.00----1.00---------------------------
.............................................................................................................................................................................................................................................GCTCTGTGATGATATGTCCTCTGTCTG.......................................................................................... 271.000.00---------1.00----------------------
..................................................................................................................................................................................................................CTGAGCCTGTCTCCAGCAG............................................................................................................................. 191.000.00-------------------------1.00------
..................................GTTCAGAGTGGAGCAGGTCTG........................................................................................................................................................................................................................................................................................................... 211.000.00--------------------------1.00-----
.....................................................................................................................CAGTAAGAATGAATTTGGTGGAAGGGGGC................................................................................................................................................................................................................ 2911.001.00-------------1.00------------------
..........CAGGGCTGGGACTCTGGCG..................................................................................................................................................................................................................................................................................................................................... 1911.001.00-----------------------1.00--------
...........AGGGCTGGGACTCTGGC...................................................................................................................................................................................................................................................................................................................................... 1740.250.25------------------------------0.25-
........................................................................................................................................................................................................................................................................................................................................TTGGAGATGAAGTCAGG......... 1750.200.20-------------------------------0.20