ID: uc002och.1_intron_5_0_chr19_36387172_r
GENE: NFKBID(1)
chr19:36387122-36387343-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(1)
AGO3.ip 		(12)
B-CELL 		(5)
BRAIN 		(4)
BREAST 		(21)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(2)
HELA 		(5)
LIVER 		(3)
OTHER 		(6)
SKIN 		(1)
XRN.ip

Sense strand
GTTCGGTCTTGCACGTGGCCGCTACCTACGGGCTCCCAGGAGTTCTCTTGGTATGGCCAGCTGGCAGGCAGGGGTTTGTCTGGGGGGTAGACTGGTTGCCCAGATTTTGGCTTCCAGGGCCAGGAGGCCAGGGGATACCCTTACCCAGCAGTCTGCCTTCTCTTCCTCCCAGGCTGTGCTTAACTCTGGGGTCCAGGTTGACCTGGAAGCCAGAGACTTCGA
...............................................................................((((((((((((((.((((.........((((((((.......))))))))(((....))).....))))))))))))).........)))))..................................................
.........................................................................74................................................................................................172................................................
SizePerfect hitTotal NormPerfect NormSRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR038858(GSM458541)
MEL202. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR038855(GSM458538)
D10. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR038857(GSM458540)
D20. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		TAX577589(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM532886(GSM532886)
G850T. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577741(Rovira)
total RNA. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
..............................................................................TCTGGGGGGTAGACTGGTTGC...........................................................................................................................21112.0012.00---3.001.00-1.003.001.00------1.00-1.00-------------------------1.00----------------
..............................................................................TCTGGGGGGTAGACTGGTTGCC..........................................................................................................................22110.0010.003.00-------------1.00------------1.00----1.00-1.001.00---1.00--------1.00-----------
..............................................................................TCTGGGGGGTAGACTGGTTGA...........................................................................................................................2115.005.00----2.00----1.00-------------1.00-------------------------1.00----------
..............................................................................TCTGGGGGGTAGACTGGTTG............................................................................................................................2015.005.00---------1.00---------1.00------1.00--1.00---------------1.00--------------
..............................................................................TCTGGGGGGTAGACTGGTTA............................................................................................................................2014.003.00-3.00--------------1.00-------------------------------------------
..............................................................................TCTGGGGGGTAGACTGGTTGT...........................................................................................................................2114.005.00-------------1.00-1.00--------1.00------------1.00----------------------
..............................................................................TCTGGGGGGTAGACTGGTT.............................................................................................................................1913.003.00-----1.00----------1.00-------------1.00-----------------------------
..............................................................................TCTGGGGGGTAGACTGGTTGCAT.........................................................................................................................2313.0012.00-----------2.00--------1.00---------------------------------------
..............................................................................TCTGGGGGGTAGACTGGTTGCCT.........................................................................................................................2312.0010.00--------1.00---1.00-----------------------------------------------
..............................................................................TCTGGGGGGTAGACTGGTTGTA..........................................................................................................................2212.005.00--2.00---------------------------------------------------------
..............................................................................TCTGGGGGGTAGACTGGTTGAAAA........................................................................................................................2412.005.00--2.00---------------------------------------------------------
..............................................................................TCTGGGGGGTAGACTGGTTGCCAAA.......................................................................................................................2511.0010.001.00-----------------------------------------------------------
..............................................................................TCTGGGGGGTAGACTGGTTGAT..........................................................................................................................2211.005.00------1.00-----------------------------------------------------
..............................................................................TCTGGGGGGTAGACTGGTTAA...........................................................................................................................2111.003.00-------------------------------1.00----------------------------
..............................................................................TCTGGGGGGTAGACTGGTTGCAA.........................................................................................................................2311.0012.00------------1.00-----------------------------------------------
........................................................................................................................................................................CCAGGCTGTGCTTAACTCTGGGGTCCAGGTT.......................3111.001.00------------------------------------------1.00-----------------
..............................................................................TCTGGGGGGTAGACTGGTTGCCA.........................................................................................................................2311.0010.00--------------1.00---------------------------------------------
......................................................................................................................................................................TCCCAGGCTGTGCTTAACTCTG..................................2211.001.00----------------------------1.00-------------------------------
..............................................................................TCTGGGGGGTAGACTGGCTT............................................................................................................................201.000.00-----1.00------------------------------------------------------
..............................................................................TCTGGGGGGTAGACTGGTTAT...........................................................................................................................2111.003.00-----1.00------------------------------------------------------
..............................................................................TCTGGGGGGTAGACTGGTTGCCAA........................................................................................................................2411.0010.00--------------------------------------------------1.00---------
....................................................................................................................................................................................................GTTGACCTGGAAGCCAGAGACTTC..2411.001.00----------1.00-------------------------------------------------
..............................................................................................................................................................................................GTCCAGGTTGACCTGGAA..............1811.001.00-----------------------------------------1.00------------------
.......................................................................................................................................................................................................GACCTGGAAGCCAGAGAC.....1811.001.00--------------------------------------1.00---------------------
...............................................................................CTGGGGGGTAGACTGGTTGCC..........................................................................................................................2111.001.00------1.00-----------------------------------------------------
........................................................................................................................................................CTGCCTTCTCTTCCTCCCAGG.................................................2111.001.00-----------------------------------------------1.00------------
.................................................................................................................................................................................................CAGGTTGACCTGGAAGCCAGAGAC.....2411.001.00----------1.00-------------------------------------------------
..............................................................................TCTGGGGGGTAGACTGGTA.............................................................................................................................191.000.00---------------------------------1.00--------------------------
..............................................................................TCTGGGGGGTAGACTGGTTGCCTTAT......................................................................................................................2611.0010.00---------------------1.00--------------------------------------
...............................................................................CTGGGGGGTAGACTGGTTGCCAA........................................................................................................................2311.001.00-----------------1.00------------------------------------------
..............................................................................TCTGGGGGGTAGACTGGTTGG...........................................................................................................................2111.005.00-------------1.00----------------------------------------------
..............................................................................TCTGGGGGGTAGACTGGTTGCA..........................................................................................................................2211.0012.00----------------------------------------1.00-------------------
..............................................................................TCTGGGGGGTAGACTGGTTGAAA.........................................................................................................................2311.005.00-1.00----------------------------------------------------------
....................................................................................................................................................................................................GTTGACCTGGAAGCC...........1590.110.11-----------------------------------------------------------0.11

Antisense strand
GTTCGGTCTTGCACGTGGCCGCTACCTACGGGCTCCCAGGAGTTCTCTTGGTATGGCCAGCTGGCAGGCAGGGGTTTGTCTGGGGGGTAGACTGGTTGCCCAGATTTTGGCTTCCAGGGCCAGGAGGCCAGGGGATACCCTTACCCAGCAGTCTGCCTTCTCTTCCTCCCAGGCTGTGCTTAACTCTGGGGTCCAGGTTGACCTGGAAGCCAGAGACTTCGA
...............................................................................((((((((((((((.((((.........((((((((.......))))))))(((....))).....))))))))))))).........)))))..................................................
.........................................................................74................................................................................................172................................................
SizePerfect hitTotal NormPerfect NormSRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR038858(GSM458541)
MEL202. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR038855(GSM458538)
D10. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR038857(GSM458540)
D20. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		TAX577589(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM532886(GSM532886)
G850T. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577741(Rovira)
total RNA. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
......................................................................................................................................................GAGGAAGAGAAGGCAGAC...................................................... 1821.501.50---------------------------------------------------0.500.500.50------
........................................................................GGTTTGTCTGGGGGGTA..................................................................................................................................... 171.000.00----------------------------------------------1.00-------------
...........................ACGGGCTCCCAGGAGC................................................................................................................................................................................... 161.000.00----------------------1.00-------------------------------------
.............................................................................................................GCTTCCAGGGCCAGGACTC.............................................................................................. 191.000.00------------------1.00-----------------------------------------
..............................................................................................................................................................................................GTCCAGGTTGACCTGGA............... 171.000.00-------------------------1.00----------------------------------
.........................................GTTCTCTTGGTATGGGTG................................................................................................................................................................... 181.000.00--------------------------------------------1.00---------------
..........................................................................................................................................CCTTACCCAGCAGTCTCGG................................................................. 191.000.00------------------------------------1.00-----------------------
.....................................................................................................................................................AGGAAGAGAAGGCAGACT....................................................... 1830.330.33---------------------------------------------------0.33--------
.....................................................................................................................................................AGTCTGCCTTCTCTTCCTATA.................................................... 210.330.00------------------------------------------------------0.33-----
..........................................................................TACCCCCCAGACAAA..................................................................................................................................... 1540.250.25--------------------------------------------------------0.25---
.............................................................................................................CTCCTGGCCCTGGAAGC................................................................................................ 1740.250.25---------------------------------------------------------0.25--
..........................................................................TTTGTCTGGGGGGTAAAAA................................................................................................................................. 190.250.00-------------------------------------------------------0.25----
.......................................................................................................................................................GGAGGAAGAGAAGGCAGA..................................................... 1870.140.14----------------------------------------------------------0.14-