ID: uc002nxf.2_intron_2_0_chr19_35422898_f.3p
GENE: ZNF30(3)
chr19:35424332-35424581+


(1)
BRAIN
(6)
CELL-LINE
(2)
HEART
(1)
HELA
(1)
LIVER
(1)
OTHER
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
GCGACAGAGTGAGACTCTGTCTCTACATAAATAAAACCGTTCTCTACCTGTCTGGAATTATGAATCCCCTTGCCCTTCTCGTGTCTGAGATATAAAGGTCAATATCGTTTGACCTTTCATTTATGGCAAATTTAACCAAAGCTGGAAGTATTTTTGAACTCATATTTTATTTCTTTTCTACATTCTTATCTCATAAGCAGGACATTCCCGTTCTAAACCACATGTGATCGCCTTATTGGAACAATGGAAA
...............................................................................................(((((((......)))))))......((((.((((..((.(((....)))...))..))))....))))......................................................................................
...............................................................................................96......................................................................................184................................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782SRR189785SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
................................................................................................................................................................CATATTTTATTTCTTTCTCA......................................................................2035.000.0022.0012.00--1.00-----------
................................................................................................................................................................CATATTTTATTTCTTTTCCA......................................................................209.000.008.001.00--------------
................................................................................................................................................................CATATTTTATTTCTTTTTCG......................................................................201.000.00-1.00--------------
............................................................................................................................................................AACTCATATTTTATTTCTTTTCTACAT...................................................................2711.001.00----1.00-----------
..............................................................................................................................................................................................................................TGTGATCGCCTTATTGGAACAATGGAA.2711.001.00------------1.00---
..............................................................................................................................................................................TTTCTACATTCTTATGACA.........................................................191.000.00--------1.00-------
...............................................................................................................................................................................TTCTACATTCTTATCTCATAAGCAG..................................................2511.001.00-----------1.00----
............................................................................................................................................................AACTCATATTTTATTTCTTTTCTACATTCTCAT.............................................................331.000.00-1.00--------------
..............................................................................................................................................................................TTTCTACATTCTTATGATC.........................................................191.000.00-------------1.00--
................................................................................................................................................................CATATTTTATTTCTTTCCCA......................................................................201.000.001.00---------------
..........................................................................................................................................................TGAACTCATATTTTACAGC.............................................................................191.000.00------1.00---------
....................................................................................................AATATCGTTTGACCTTACTC..................................................................................................................................201.000.00---1.00------------
...............................................................................................................................................................TCATATTTTATTTCTTCAAG.......................................................................201.000.00-1.00--------------
..............................................................................................................................................................CTCATATTTTATTTCTTATAT.......................................................................211.000.00-------1.00--------

Antisense strand
GCGACAGAGTGAGACTCTGTCTCTACATAAATAAAACCGTTCTCTACCTGTCTGGAATTATGAATCCCCTTGCCCTTCTCGTGTCTGAGATATAAAGGTCAATATCGTTTGACCTTTCATTTATGGCAAATTTAACCAAAGCTGGAAGTATTTTTGAACTCATATTTTATTTCTTTTCTACATTCTTATCTCATAAGCAGGACATTCCCGTTCTAAACCACATGTGATCGCCTTATTGGAACAATGGAAA
...............................................................................................(((((((......)))))))......((((.((((..((.(((....)))...))..))))....))))......................................................................................
...............................................................................................96......................................................................................184................................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782SRR189785SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
.................................................................................................................................................................................................................GTTCTAAACCACATGATG....................... 183.000.00--2.00-------1.00-----
...................................................................CCTTGCCCTTCTCGTAG...................................................................................................................................................................... 171.000.00---1.00------------
...................................ACCGTTCTCTACCTGTAGGG................................................................................................................................................................................................... 201.000.00---------1.00------
.................................................................................................................................................................................................................GTTCTAAACCACATGTATG...................... 191.000.00-----1.00----------
........................................................................ATCTCAGACACGAGAAGGG............................................................................................................................................................... 1920.500.50--------------0.50-
..............ATTTATGTAGAGACAGAG.......................................................................................................................................................................................................................... 1880.120.12---------------0.12