ID: uc002nsq.2_intron_9_0_chr19_30503439_f.3p
GENE: (10)
chr19:30506243-30506492+


(1)
B-CELL 		(2)
BRAIN 		(3)
BREAST 		(12)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(4)
LIVER 		(7)
OTHER 		(12)
SKIN 		(2)
XRN.ip

Sense strand
ATTACTTTTCAAAGAATACTGTTCATATGCATTGTTTTTGTGTTTCAAACTAAATACAGGCAGTTTTGTGCCAGCTGTGATATTGTGCATACCATATGGACCATTTTAAAGAAAATTTTAAAATTTCAAATAGATTCAACAATTACATTACTTGCTTTCACATTTTAAAGGCACTTTAAAAAAATCTACTTCTCTTGTAGGTTTTGCGGCTAGTTGGCTATTCAAGAAACCTCGCCCCTCTGAATGTCAT
........................................................................................................................................................((((((.........))))))............((((.......))))..................................................
................................................................................................................................129....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR189783SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR343334SRR189785SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR343335SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR040028(GSM532913)
G026N. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		SRR191509(GSM715619)
156genomic small RNA (size selected RNA from . (breast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
.....................................................................................................................................ATTCAACAATTACATTACTTG................................................................................................21123.0023.0020.003.00-------------------------------------------
..........................................................................................................................................................CTTTCACATTTTAAAGGCACTTTAA.......................................................................25112.0012.0012.00--------------------------------------------
..........................................................................................................................................................CTTTCACATTTTAAAGGCACTTTA........................................................................24110.0010.009.001.00-------------------------------------------
.....................................................................................................................................ATTCAACAATTACATTACCTG................................................................................................219.000.00-7.00--1.00---------1.00------------------------------
.............................................................................................................................................................................CTTTAAAAAAATCTACTTCTCTTG.....................................................2416.006.003.002.00---1.00---------------------------------------
.........................................................................................................................................................................GGCACTTTAAAAAAATCTACTTCTCTTG.....................................................2815.005.00-5.00-------------------------------------------
..........................................................................................................................................................CTTTCACATTTTAAAGGCACTTTAAA......................................................................2614.004.003.001.00-------------------------------------------
..........................................................................................................................................................................GCACTTTAAAAAAATCTACTTCTCTT......................................................2613.003.00----2.00---------1.00------------------------------
.............................................................................................................................TCAAATAGATTCAACAATTACATTACTTGCTTTA...........................................................................................343.000.00----------3.00----------------------------------
.............................................................................................................................................................................CTTTAAAAAAATCTACTTCTCTT......................................................2313.003.003.00--------------------------------------------
..................................................................................................................................................................................................................................AAACCTCGCCCCTCTGAATGTCAT2413.003.00--3.00------------------------------------------
.....................................................................................................................................ATTCAACAATTACATTACT..................................................................................................1922.502.502.50--------------------------------------------
...........................................................................................................................................................................CACTTTAAAAAAATCTACTTCTCTTG.....................................................2612.002.00-2.00-------------------------------------------
...................................................................................................................................................................TTTAAAGGCACTTTAAAAAAATCTACTTCTCTTG.....................................................3412.002.00--2.00------------------------------------------
.......................................................................................................................................................................AAGGCACTTTAAAAAAATCTACTCTCG........................................................272.000.00-2.00-------------------------------------------
................................................................................................TGGACCATTTTAAAGAAAATTTTAAA................................................................................................................................2612.002.00------------2.00--------------------------------
............................................................................................................................................AATTACATTACTTGCTTTCACATTTTA...................................................................................2712.002.00-------------2.00-------------------------------
.......................................................................................................................................TCAACAATTACATTACTTG................................................................................................1912.002.002.00--------------------------------------------
............................................................................................................................TTCAAATAGATTCAACAATTACA.......................................................................................................2312.002.00-------2.00-------------------------------------
.............................................................................................................................................................................CTTTAAAAAAATCTACTTCTCTTGTAGGTTTTG............................................3312.002.00--2.00------------------------------------------
..............................................................................................................................................................................TTTAAAAAAATCTACTTCTCTTG.....................................................2312.002.001.00----1.00---------------------------------------
.....................................................................................................................................ATTCAACAATTACATTACTTGCTTTCACATT......................................................................................3111.001.001.00--------------------------------------------
..........................................................................................................................................................CTTTCACATTTTAAAGGCACTGTA........................................................................241.000.001.00--------------------------------------------
...............................................................................................................................AAATAGATTCAACAATTACATA.....................................................................................................221.000.00---1.00-----------------------------------------
........................................................................................................................................................................AGGCACTTTAAAAAAATCTACTTCTCCTG.....................................................291.000.00-1.00-------------------------------------------
.................................................................................................................................ATAGATTCAACAATTACATTACTTGC...............................................................................................2611.001.001.00--------------------------------------------
............................................................................................................................................................TTCACATTTTAAAGGCACTTTAA.......................................................................2311.001.001.00--------------------------------------------
....................................................AATACAGGCAGTTTTGTGCCAGCTGTG...........................................................................................................................................................................2711.001.00------1.00--------------------------------------
......................................................................CCAGCTGTGATATTGTG...................................................................................................................................................................1731.001.00----------------------------------------0.330.330.33--
..........................................................................................................................................................CTTTCACATTTTAAAGGCACTT..........................................................................2211.001.001.00--------------------------------------------
...............................................................................................................AAAATTTTAAAATTTCAAATAG.....................................................................................................................2211.001.001.00--------------------------------------------
.....................................................................................................................................ATTCAACAATTACATTACTCG................................................................................................2121.002.50-1.00-------------------------------------------
.............................................................................................................................TCAAATAGATTCAACAATTACAT......................................................................................................2311.001.00-----------------------------1.00---------------
.......................................................................................................................................................................................................GGTTTTGCGGCTAGTTGGCTATTTC..........................251.000.00----------------------1.00----------------------
.........................................................................................................................................................................GGCACTTTAAAAAAATCTACTTCTCT.......................................................2611.001.00-1.00-------------------------------------------
..................................................................................................................................................ATTACTTGCTTTCACATTTTAAAGG...............................................................................2511.001.00--------------------------1.00------------------
............................................................................................................................................................TTCACATTTTAAAGGCAGAC..........................................................................201.000.00---------------------------1.00-----------------
.......................................................................................................................AAAATTTCAAATAGATCCCA...............................................................................................................201.000.00---------------1.00-----------------------------
.............................................................................................................................TCAAATAGATTCAACAATTACATT.....................................................................................................2411.001.00----------------------------1.00----------------
..................................................................................................................................................................................................................TAGTTGGCTATTCAAGAAAC....................2011.001.00------------------------------1.00--------------
.............................CATTGTTTTTGTGTTTCAA..........................................................................................................................................................................................................1911.001.00-------1.00-------------------------------------
...........................................................................................................................................................TTTCACATTTTAAAGGCACTTTA........................................................................2311.001.001.00--------------------------------------------
.................................................................................................................................................................................................CTTGTAGGTTTTGCGGCTAGTTGGG................................251.000.00---1.00-----------------------------------------
...................................................................................................................................................................TTTAAAGGCACTTTAAAAAAATCTACTTCTCTT......................................................3311.001.00-1.00-------------------------------------------
...............................................................................................................................................................................................................GGCTAGTTGGCTATTCAAGA.......................2011.001.00---1.00-----------------------------------------
..................................................................................................................................................................................................TTGTAGGTTTTGCGGCTAGTTGGGA...............................251.000.00----------------------------------1.00----------
.................................................................................................................................................................................................CTTGTAGGTTTTGCGGCTAGTTG..................................2311.001.00-------1.00-------------------------------------
..........................................................................................ACCATATGGACCATTTTAAAGAA.........................................................................................................................................2311.001.00--------1.00------------------------------------
............................................................................................CATATGGACCATTTTAAAGAAA........................................................................................................................................2211.001.00-------------------------------1.00-------------
...............................................................................................................................................................................................CTCTTGTAGGTTTTGCGGCTAGTTG..................................2511.001.00--------1.00------------------------------------
...................................................................................................................................................................................................................................AACCTCGCCCCTCTGAATGTCACAC251.000.00---------1.00-----------------------------------
......................................................................................................................................................................................................AGGTTTTGCGGCTAGTTGGCTATTTA..........................261.000.00-------------------------------------1.00-------
...................................................................................................................................................................................................TGTAGGTTTTGCGGCTA......................................1711.001.00-----------------1.00---------------------------
.....................................................................................................................................................ACTTGCTTTCACATTTTAAA.................................................................................2011.001.00---1.00-----------------------------------------
..............................................................................................................................................................................................TCTCTTGTAGGTTTTGCGGCTAATT...................................251.000.00---1.00-----------------------------------------
............................................................................................................................................................................................CTTCTCTTGTAGGTTTTGC...........................................1911.001.00---------------------1.00-----------------------
.........................................................................................................................................................................................................................................GCCCCTCTGAATGTCAAA181.000.00-----------------------1.00---------------------
..........................................................................................................................................................................................................................................CCCCTCTGAATGTCACTG181.000.00-1.00-------------------------------------------
..................................................................................................................................................................................................TTGTAGGTTTTGCGGCTAGTTGGCTACTC...........................291.000.00------1.00--------------------------------------
...ACTTTTCAAAGAATACTGTTCATATGC............................................................................................................................................................................................................................2711.001.00--------1.00------------------------------------
...............................................................................................................................................................................................CTCTTGTAGGTTTTGCGGCT.......................................2011.001.00---------------------------------1.00-----------
.................................GTTTTTGTGTTTCAAACTAAA....................................................................................................................................................................................................2111.001.00------------------1.00--------------------------
............................................................................................CATATGGACCATTTTAAAGAAAATTTTAAAA...............................................................................................................................3111.001.00----------------1.00----------------------------
.....................................................................................................................................ATTCAACAATTACATTACTTT................................................................................................211.000.00-----1.00---------------------------------------
...............................................................................................................................................................................................................................AAGAAACCTCGCCCC............1511.001.00-----------1.00---------------------------------
......................................................................................................................................................................AAAGGCACTTTAAAAAAATCTACTTCTCTTG.....................................................3111.001.00-1.00-------------------------------------------
..................................................................................................................................................................................................................................AAACCTCGCCCCTCTGAATGTCACAC261.000.00---------1.00-----------------------------------
...........................................................................................................................................................TTTCACATTTTAAAGGCACTTT.........................................................................2211.001.00---------1.00-----------------------------------
............................................................................................CATATGGACCATTTTAAAGAA.........................................................................................................................................2111.001.00--------------------------------1.00------------
...........................................................................................................................................................................................ACTTCTCTTGTAGGTTTTG............................................1911.001.001.00--------------------------------------------
.........................................................................................................................................................................................................................CTATTCAAGAAACCTCGCC..............1911.001.00-------------------1.00-------------------------
......................................................................CCAGCTGTGATATTGTGCATACATGG..........................................................................................................................................................261.000.00---------------1.00-----------------------------
....................................................................................................................................................................................................................................ACCTCGCCCCTCTGAATGTCATACGT261.000.00------1.00--------------------------------------
.................................................................................................................................................................................................CTTGTAGGTTTTGCGGCT.......................................1811.001.00--------------------1.00------------------------
.....................................................................................................................................ATTCAACAATTACATTACGTC................................................................................................211.000.001.00--------------------------------------------
...........................................................................................................................................................................CACTTTAAAAAAATCTACTTCTCTCG.....................................................261.000.00-1.00-------------------------------------------
.................................................................................................................................ATAGATTCAACAATTACATTACTTGCTT.............................................................................................2811.001.00------------------------------------1.00--------
...................................................................................................................................................................................................TGTAGGTTTTGCGGCTAGTTGG.................................2211.001.00---1.00-----------------------------------------
....................................................................................................................................................................................................GTAGGTTTTGCGGCTAGTTGGCTATTT...........................271.000.00---1.00-----------------------------------------
............AGAATACTGTTCATATGCATTGTTT.....................................................................................................................................................................................................................2511.001.00-----------------------------------1.00---------
...............................................................................................................................................................................TTAAAAAAATCTACTTCTCTTG.....................................................2211.001.00-1.00-------------------------------------------
....................................................................................................................................................................TTAAAGGCACTTTAAAAAAATCTACTTCTCTTG.....................................................3311.001.00-----1.00---------------------------------------
..........................................................................................................................................................CTTTCACATTTTAAAGGCACTATAA.......................................................................251.000.001.00--------------------------------------------
.............................................................................................................................................................................................TTCTCTTGTAGGTTTTGCGGCTAGTTGGCC...............................301.000.00------1.00--------------------------------------
...........................................................................................................................................................................CACTTTAAAAAAATCTACTTCTCTTGTAG..................................................2911.001.001.00--------------------------------------------
......................................................................................................................................................................AAAGGCACTTTAAAAAAATCTACTTCTCTT......................................................3011.001.00-1.00-------------------------------------------
...............................................................................................................................................................................................CTCTTGTAGGTTTTGCGGCTAGTTGGCTA..............................2911.001.00------------------------1.00--------------------
..........................................................................................ACCATATGGACCATTTTAAAGA..........................................................................................................................................2211.001.00-----------1.00---------------------------------
..............................................................................................................................................................................TTTAAAAAAATCTACTTCTCTT......................................................2211.001.001.00--------------------------------------------
.............................................................................................................................................................................................TTCTCTTGTAGGTTTTGCGGC........................................2111.001.00-------------------------1.00-------------------
.....................................................................................................................................ATTCAACAATTACATTACTGG................................................................................................2120.502.500.50--------------------------------------------
.....................................................................................................................................ATTCAACAATTACATTACTG.................................................................................................2020.502.50-0.50-------------------------------------------
....................................................................................................................................................................................................................GTTGGCTATTCAAGAA......................1620.500.50--------------------------------------0.50------
...............................................................................................................................AAATAGATTCAACAATTA.........................................................................................................1830.330.33---------------------------------------0.33-----
....................................................................................................................................................................................................................GTTGGCTATTCAAGA.......................1540.250.25-------------------------------------------0.25-
................................................................................................TGGACCATTTTAAAGA..........................................................................................................................................1640.250.25--------------------------------------------0.25
..................................................................................................................ATTTTAAAATTTCAAATAG.....................................................................................................................1940.250.250.25--------------------------------------------

Antisense strand
ATTACTTTTCAAAGAATACTGTTCATATGCATTGTTTTTGTGTTTCAAACTAAATACAGGCAGTTTTGTGCCAGCTGTGATATTGTGCATACCATATGGACCATTTTAAAGAAAATTTTAAAATTTCAAATAGATTCAACAATTACATTACTTGCTTTCACATTTTAAAGGCACTTTAAAAAAATCTACTTCTCTTGTAGGTTTTGCGGCTAGTTGGCTATTCAAGAAACCTCGCCCCTCTGAATGTCAT
........................................................................................................................................................((((((.........))))))............((((.......))))..................................................
................................................................................................................................129....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR189783SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR343334SRR189785SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR343335SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR040028(GSM532913)
G026N. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		SRR191509(GSM715619)
156genomic small RNA (size selected RNA from . (breast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................................................................AAATTTTAAAATTTCACAGG...................................................................................................................... 201.000.00----1.00----------------------------------------
....................................................................................................................................................................................................................................TTCAGAGGGGCGAGGT...... 1620.500.50--0.50------------------------------------------